mRNA_E-siliculosus-1a_F_contig1307.1866.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1307.1866.1
Unique NamemRNA_E-siliculosus-1a_F_contig1307.1866.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1307.1866.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 352 bits (904), Expect = 3.020e-112
Identity = 201/226 (88.94%), Postives = 204/226 (90.27%), Query Frame = 3 
Query:  333 MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGGMPKSVSWDHSYAAGLKIRADRAAEVAHRAAAEDSKLKAAXXXXXXXXXXXXXVEVSIPRSVSCSSLGPKRTLFARTSSSKDELGAAGGGVRRGSSAITAAQHRRRMLPHRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESPTGQDHS 1010
            MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGG MPKSVSWDHSYAA LKIRADRAAEVAHRAAAEDSKL+AAXXXXXXXXXXXX VEVSIPRS SCSSLGPKRTLF RTSSSKDELGAA               H+RRML HRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDY+QFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEES TGQDHS
Sbjct:    1 MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGRMPKSVSWDHSYAARLKIRADRAAEVAHRAAAEDSKLRAAXXXXXXXXXXXX-VEVSIPRSASCSSLGPKRTLFPRTSSSKDELGAAXXXXXXXXXXXXXXXHKRRMLSHRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYAQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESATGQDHS 225
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BLAST of mRNA_E-siliculosus-1a_F_contig1307.1866.1 vs. uniprot
Match: A0A835Z1A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1A2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.140e-21
Identity = 45/75 (60.00%), Postives = 63/75 (84.00%), Query Frame = 3 
Query:  771 RGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESPT 995
            R V+F+ +V++VLIPKR+E ++ +R +LWW R+DY++FRQVLIDWK  NA +IS +DNILSINLSD+D E++ PT
Sbjct:  107 RAVAFDPRVQVVLIPKRDEINDFDRYRLWWSRDDYAKFRQVLIDWKTINADKISPTDNILSINLSDLDAEDDEPT 181
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1307.1866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2B2_9PHAE3.020e-11288.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1A2_9STRA5.140e-2160.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1307contigE-siliculosus-1a_F_contig1307:20104..25325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size678
Model size1011
Exons2
Ec32 orthologEc-26_005580.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1307.1866.1prot_E-siliculosus-1a_F_contig1307.1866.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1307 20436..25325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927828.9944391-UTR-E-siliculosus-1a_F_contig1307:20103..204351622927828.9944391-UTR-E-siliculosus-1a_F_contig1307:20103..20435Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1307 20104..20435 +
1696318697.7582567-UTR-E-siliculosus-1a_F_contig1307:20103..204351696318697.7582567-UTR-E-siliculosus-1a_F_contig1307:20103..20435Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1307 20104..20435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.0057774-CDS-E-siliculosus-1a_F_contig1307:20435..208971622927829.0057774-CDS-E-siliculosus-1a_F_contig1307:20435..20897Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1307 20436..20897 +
1696318697.7733486-CDS-E-siliculosus-1a_F_contig1307:20435..208971696318697.7733486-CDS-E-siliculosus-1a_F_contig1307:20435..20897Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1307 20436..20897 +
1622927829.0152352-CDS-E-siliculosus-1a_F_contig1307:25109..253251622927829.0152352-CDS-E-siliculosus-1a_F_contig1307:25109..25325Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1307 25110..25325 +
1696318697.78398-CDS-E-siliculosus-1a_F_contig1307:25109..253251696318697.78398-CDS-E-siliculosus-1a_F_contig1307:25109..25325Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1307 25110..25325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1307.1866.1

>prot_E-siliculosus-1a_F_contig1307.1866.1 ID=prot_E-siliculosus-1a_F_contig1307.1866.1|Name=mRNA_E-siliculosus-1a_F_contig1307.1866.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=226bp
MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGGMPKSVSWDHSYAAG
LKIRADRAAEVAHRAAAEDSKLKAAAAAAAVAAAKGKGVEVSIPRSVSCS
SLGPKRTLFARTSSSKDELGAAGGGVRRGSSAITAAQHRRRMLPHRRGVS
FNTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRIS
HSDNILSINLSDIDEEEESPTGQDHS
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mRNA from alignment at E-siliculosus-1a_F_contig1307:20104..25325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1307.1866.1 ID=mRNA_E-siliculosus-1a_F_contig1307.1866.1|Name=mRNA_E-siliculosus-1a_F_contig1307.1866.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5222bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1307:20104..25325+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TAGGCGTCCGCCCAGGGAAACAACACACCATAAGACTATCACCACCCTAA
ATTTCTTGTATTGTGTGTGTGGAAAGGGTCGACCGAAGACTTTCGCTTTC
TACTCACCCCGACAGCACGGTCCTCTTGTCTGCCTCTATTACTACGGCGG
TGCGGTGCGCTCGCTGGAAGGAAGCTGTCCCTCGCGACACGTCAGCGACG
GTAGCAGCAGCAGCAGCAGCAGCAGTGACAAAAAAGATTGTTTTGTCCAT
GTAGGCAGCTGCTCGTCGCACACCAGGAAGGTTCGGAGGGTTCGTTCAGC
GCTACTAAACAACCAGGCTAGGCGGCAGCAGCATGTACACGAGGAAACAG
AGATGGAGAAGGACTCGGACGCGCAAGCAGGCCTGGGGCGACCTTCCCCC
AGAGCTTCTAGACGCGATGCTCGCGGCCGGCGGCGGCGGTATGCCCAAGT
CCGTTTCCTGGGACCACAGCTACGCCGCGGGGCTGAAGATTCGAGCAGAC
AGGGCGGCCGAGGTAGCGCACCGGGCAGCGGCCGAGGACTCCAAGCTCAA
AGCGGCGGCGGCGGCGGCGGCGGTGGCGGCCGCAAAGGGCAAGGGGGTCG
AGGTCAGCATCCCGCGGTCGGTGTCCTGCTCGTCCCTCGGACCGAAGCGG
ACTCTGTTCGCCCGAACCTCGTCCTCCAAGGATGAGCTTGGGGCCGCGGG
GGGCGGCGTCAGGAGAGGTAGCAGCGCGATCACAGCGGCTCAGCACAGGC
GGCGCATGCTGCCGCACCGGAGAGGCGTGAGCTTTAACACACAGGTGGGT
GCTAGCTTGGCTCTCGAGGTAGATTCGGGGCAGCTACTGAGCTGTTGGTT
CATTACTGTGTTTTCCCCTCCTCGTACACGAAGTAGTGATTCGTTTTTAT
GATCAGCACCATTCGGTCAGGTGACGGCTCTCCCTAAAACAAAGACTAGC
TTATACTGCTGTCGACGACGCTCTATGGTTCATGCTGCGGAGGAAAGGGG
GCCATGAGGTGGTGGCGTGGTCCATGTCTGTGTGTTCATGTTGTCCCGTC
AACAGCTGTCTCTTGGTTGATTCTCGCATTCTCTCTCTGGAACTTTCAGC
CAAAGATGACCCCCAGATGCTCTCATCATCGACTTTTTTATTCTTTTTCA
TGTGTGACGAAAGCAGTTGCAAGCGGCGCAACCGCGCAATGCTTGCTTGG
AAGTTCGGGTGTGGAACACTGCTGGCTAGCGACACGCCTGCTTTACGGGC
TTCATCTGTGACACCCCGCTTTTCGTGTTCCATGGCGAACAGCTCCACCC
CAAATACAAGAATAAAACACCGAGGGAAATCTACTCACAGGGTTCAGCCA
AAACAGAACAGAACCTTGGTGCGGTGTCCGCTGAAAACGTTTCCTGAGGA
CCCTCACACCCCCACCCTACATATCAAGATCTCCCACCTCTAATGGTTGA
TTTCATGGTAACTGGGTCATGAACGTCAGCCACCCTCTTTCTCACGTGAC
TCCTCCTCTCTATCCCGCGCTGTAGATCTGTGCTGCTGTGCCGTGGTCTT
TATGTATGCATAGGTATTTCTATTTCTGCATGCATGCATGTGGAGAAGAA
CTGCTGTACGTGTGTGGACGTCATCGATCATTACCGTCCCGATCCCTTTG
TTCGAACAGCAGTCAATCCCAGCCGCAGCAGCCCACCACCCAAGGTCGTA
CACGTACAACATACCTTCTAAGAAATGAAAGTCGATCGTTGTCTAAGCCC
TACACAGCAGTACACGTACACAGAAGTATGTAGGTGCGCGACGTTACCCG
GAATTGCTTGTCGTGTTAGGCATAAATTACAGCAGTATACTCGGTGCCAA
CGGAGTCCCTGTCCTCTTTGCAATGTGAGATATTTGGGTGGTCTGTTGTC
TTCGCATCTGTACCAGCCCTGACGCGGACCGCTCTCCGTGGTCACAGGTC
AACTACCGTATACGACACAAGATGACACACCCCTTGGACTGATTTTCAAA
GCTCGATTTATCAACAGCAGAAAGAGCCGCAGCGCCGAAAACGGCGGCGT
TGAAGCCGTCTGGTCGAGAGCTCTCCGAAAGCGTATCGTTTCGTTTATTT
TTTGATGCATCCTCTTCGTCGTGGAGTAATCGAGTTTTGCAAATTGGTCG
AGGGGGTGTGTTATCTTGTGTCGTGTACGGTAGGTACCCGAAGAGGATTG
TGCGCATACAGCAGTACATTCCTCTGTGAGAGGGGCTTGACGACAACAAC
CGCGCCGCCTTTAAAGCATGCGTGTGCCTACATACGTATACCACCACACA
GGTAGGTACATAGAAGTAGAACAAGCAGTGTAGTTCAACCGCACAACCCA
CACCTGCTTCCTCTACACTCCCAGCAGAACACATGCAACAACAGCAGTCT
GATACACAAGGTGCCAACCAAATGGTCCTTGTTGAGTATTGTACGTTCTC
CACACGGGAGAGGTATTTTCGCAACATGCTGCTCGGAGATTTCATTGCTA
TTTCTTACCCGGTATAGAACTACAGGGGAGGATGTAAGATGTATGCATAG
GTTACCTGTGCAGATGTTGTTGTACCCTAAGCACCAGCTGCTATGACTGA
TATACATCATCAGTGTATAGACTTAAAAAGACTCGATTTAAGTCCAGTAC
CCAGCCGGTTTCCCTCAACTCACTGAAAAGACTCCCCCACATCCCGTTCG
AACGTGGGTATATCTCGAACGGGTTATTTCTTCCTGTGTGTGTATTTACT
TTTCCTAATATTTCCTCGACTGCTGTACTAATCCTTGAGTCGATATGGGT
TCGTCGTGCTTCTTTTAGAACATACCCCACTGTAGTAATAAGAATCGCAG
TCACAGAGAGACCACCCGTTCCAGATAATGCCCCACACGAAAGGATGACT
TTCAGTCTTGGCAGGTGAGTGTTGGAGAAGAACCTGTCTGACTTACCTCG
AGTCTGTTTAAGCGTATGCATGCCAGGTACGCATATGTGTTCACGAAGCA
TCCGCGATGCCAGCGGATAAGAAATTACCCGCTCTACAGCAAACGCATCT
ATACTGCTGCTGTGGGTGTGTGCCGCTTTTCATATATTTCCCGTCCGTTC
CGTCAGTGAAGGGATATTCAACAACCCGTGCGTTCAACAAGTAAATTACA
GAGGAAAACGCGCAAGTAAACAACGAAGATCATGGGTTCGGTAAGTAGGC
CATTTTTTTGGGAAATTCCTGTTGTACTCTGTAGTCTCGTGCCACCGGCC
AAGCTGGGGTACCCGGTTCATGTCCCTATGGCCTGCAACACGCTACATGT
ACGACATTGCGGCTGACACCTGATCGATCGCCCATCTCCCCGGGAATCGA
GGTATTGGACACACGTACCCCCAAAAAGTGCTCTTTCGTTTCCCGGCTAG
TTTAAACCCTCCCGGCACTGCGAATGAAGAACATAAACGTACGTTCTATG
CGTACGGCAGCACGATGTTCTCTGAATCGTTGCGAAATGATGGCCTCACG
GGGAGTTCTTCCCCCTTATTTTTCCGTGATCTGTACAGCAGTAGCTGCCC
AAGGTTGCCCCCCCCCCGCTGAGTTTCCCAATAAGAAAAAAGAAATGGGC
TCGAGTGTAAAAATTTAGGGCCTCTGTTGACGTTCAACAGTTAAACCTAT
TTGAGCACCCAATTTGTGGATGGGCCTAAGTTTGGTTTTGGGCCAAAAAG
TGCGTCGCTGTAACATAATTTTACCGCACCCAAGTATTAATCGAGGTTCA
GCAACACCCAAATACGGTTGAATCGCCGCAGCGAGGTGACGTGGTCACCA
AACAGTTATACAGAGCGATAGACAATGTGCATCACACAGGAGCTGTTAGA
ATGGAGTATCAGCACACACACGAAGCTAATCATCAGCAGGTGGTGCCAGT
GGTCCAAGCCTTATCCTCAGGCGTGCTCTACAACTTTTGTTTGGACTCTC
GCTGCACACGACCGGCCGTTGGCTTTTGACATCGCACATTTTGGGAAGCA
ACCTCCACAGCAACCCAACCTGCGCGAAGAGTTGACACGCTCACAGAATC
ATTGCGATGCAGCTATTTCCCAGCAGCGGGCAGTGGGCGATGCGTGTGGG
TGCCGCACGGCCAGTGTCCCACATGCGGTCCCGTCAGGGGTAACGCCAAC
ACGAGTTCAGCTCGTCATGGGGGGTGCAAAAGGGGCGAAGTCCAGCTCGT
GTACTTCGATTCAGCATAAAACGGTTCAATTTGCAATTGTTTTTGGTGCA
CCCAATATCAAAGTCCCACTTTTACGGGCAGAGAAAGCGTCATCGTGTTT
TTCCCTGTTGACCAATCAGCGTCTTTCGCCCCCGATACCCCCCCAAACTT
AGCTACTTGCAGGGCCTCTATTTTTGTTGCAATTTTTCACATTAAAACAG
GCCCGTAAATGGAAAGTTTGAGGCCCCCATCTTGAAGTCGCTGCACTGCT
GCTGTTTAGTTTTGTTGGGAACATTTCCCCTCTCTGCCAAACGTTGCCCC
CCGCCCCCCCCCTCCCCCCCGCCCTTTATGGGGAGCTTTGAGACACACAC
GAGCCCTTGAAATGACTCCAAATCTTGCGAGTTCTGAACGCCTTTGGGTT
GAACCCCCCAAGAGAAGTTGGCCCAGAATATGAAGACTTTGAGTCAGCCC
GTTCGTGCCGTGGCTGAAATGTTTCGATCAAAAGCATGAAAGTTCGCTCA
CCCAAAAGTAGAGATGGCCCCGGGGCGTGCTTTTTCATCATGGCGTTTGA
CACACACCCCGCTCCGTGATAGGAGGACGGAGTAAGCCGCGGATATGCAC
ACGGCTCAACGAGCTATAATAGCTGCCCAAATAGTGTGTCTGCTCCTGGG
ATGGTGCCTGTTGTCGCTCCATGTGCGCACCCTGCTTACCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCATGCCCTTTGGTGG
AAACTGCCTCCTCCTCCTCCTCCTCCTCGTTCGCGGCGTGTACCCCCTGT
ACACAGGTGAAAATGGTCCTTATCCCCAAGAGGGAGGAGTTTAGCGAGCT
GGAGAGGGTGAAGCTGTGGTGGGGGCGAGAGGACTACTCGCAGTTCCGGC
AGGTGCTGATCGACTGGAAGCGGGCGAACGCGCACCGCATCTCGCACTCG
GACAACATCCTGTCCATCAACCTCAGCGACATCGACGAGGAAGAGGAGTC
CCCCACCGGCCAGGACCATTCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1307:20104..25325+

>mRNA_E-siliculosus-1a_F_contig1307.1866.1 ID=mRNA_E-siliculosus-1a_F_contig1307.1866.1|Name=mRNA_E-siliculosus-1a_F_contig1307.1866.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1307:20104..25325+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTACACGAGGAAACAGAGATGGAGAAGGACTCGGACGCGCAAGCAGGC
CTGGGGCGACCTTCCCCCAGAGCTTCTAGACGCGATGCTCGCGGCCGGCG
GCGGCGGTATGCCCAAGTCCGTTTCCTGGGACCACAGCTACGCCGCGGGG
CTGAAGATTCGAGCAGACAGGGCGGCCGAGGTAGCGCACCGGGCAGCGGC
CGAGGACTCCAAGCTCAAAGCGGCGGCGGCGGCGGCGGCGGTGGCGGCCG
CAAAGGGCAAGGGGGTCGAGGTCAGCATCCCGCGGTCGGTGTCCTGCTCG
TCCCTCGGACCGAAGCGGACTCTGTTCGCCCGAACCTCGTCCTCCAAGGA
TGAGCTTGGGGCCGCGGGGGGCGGCGTCAGGAGAGGTAGCAGCGCGATCA
CAGCGGCTCAGCACAGGCGGCGCATGCTGCCGCACCGGAGAGGCGTGAGC
TTTAACACACAGATGTACACGAGGAAACAGAGATGGAGAAGGACTCGGAC
GCGCAAGCAGGCCTGGGGCGACCTTCCCCCAGAGCTTCTAGACGCGATGC
TCGCGGCCGGCGGCGGCGGTATGCCCAAGTCCGTTTCCTGGGACCACAGC
TACGCCGCGGGGCTGAAGATTCGAGCAGACAGGGCGGCCGAGGTAGCGCA
CCGGGCAGCGGCCGAGGACTCCAAGCTCAAAGCGGCGGCGGCGGCGGCGG
CGGTGGCGGCCGCAAAGGGCAAGGGGGTCGAGGTCAGCATCCCGCGGTCG
GTGTCCTGCTCGTCCCTCGGACCGAAGCGGACTCTGTTCGCCCGAACCTC
GTCCTCCAAGGATGAGCTTGGGGCCGCGGGGGGCGGCGTCAGGAGAGGTA
GCAGCGCGATCACAGCGGCTCAGCACAGGCGGCGCATGCTGCCGCACCGG
AGAGGCGTGAGCTTTAACACACAGGTGAAAATGGTCCTTATCCCCAAGAG
GGAGGAGTTTAGCGAGCTGGAGAGGGTGAAGCTGTGGTGGGGGCGAGAGG
ACTACTCGCAGTTCCGGCAGGTGCTGATCGACTGGAAGCGGGCGAACGCG
CACCGCATCTCGCACTCGGACAACATCCTGTCCATCAACCTCAGCGACAT
CGACGAGGAAGAGGAGTCCCCCACCGGCCAGGACCATTCAGTGAAAATGG
TCCTTATCCCCAAGAGGGAGGAGTTTAGCGAGCTGGAGAGGGTGAAGCTG
TGGTGGGGGCGAGAGGACTACTCGCAGTTCCGGCAGGTGCTGATCGACTG
GAAGCGGGCGAACGCGCACCGCATCTCGCACTCGGACAACATCCTGTCCA
TCAACCTCAGCGACATCGACGAGGAAGAGGAGTCCCCCACCGGCCAGGAC
CATTCA
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