mRNA_E-siliculosus-1a_F_contig102.185.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig102.185.1 vs. uniprot
Match: D7FZ54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ54_ECTSI) HSP 1 Score: 661 bits (1705), Expect = 1.670e-234 Identity = 332/337 (98.52%), Postives = 332/337 (98.52%), Query Frame = 2 Query: 191 TNNMFAVSPACHPRHAFALASRVAGGNDCTRKSGLGKGSRARFGTRRAASGHTPLQFQVGDSSLSSR-KAWHRPGARMHHPQDQRRFLRGSGQHFPHSDQESLGLFSGDGKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHW 1198
T NMFAVSPACHPRHAFALASRVAGGNDCTRKSGLGKGS ARFGTRRAASGHTPLQFQVGDSSLSSR KA HRPGARMHHP DQRRFLRGSGQHFPHSDQESLGLFSGDGKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHW
Sbjct: 2 TTNMFAVSPACHPRHAFALASRVAGGNDCTRKSGLGKGSHARFGTRRAASGHTPLQFQVGDSSLSSRRKASHRPGARMHHPHDQRRFLRGSGQHFPHSDQESLGLFSGDGKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHW 338
BLAST of mRNA_E-siliculosus-1a_F_contig102.185.1 vs. uniprot
Match: A0A6H5JRP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRP2_9PHAE) HSP 1 Score: 631 bits (1628), Expect = 3.130e-223 Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 2 Query: 419 MHHPQDQRRFLRGSGQHFPHSDQESLGLFSGDGKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHWYELTPESRAHINFKEQQQFGSLWKLLSELPDEPGVLPEEFMNKTSEDPNKNN 1354
MHHPQDQRRFLRGSGQHFPHSDQESLGLFSGDGKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHWYELTPESRAHINFKEQQQFGSLWKLLSELPDEPGVLPEEFMNKTSEDPNKNN
Sbjct: 1 MHHPQDQRRFLRGSGQHFPHSDQESLGLFSGDGKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHWYELTPESRAHINFKEQQQFGSLWKLLSELPDEPGVLPEEFMNKTSEDPNKNN 312
BLAST of mRNA_E-siliculosus-1a_F_contig102.185.1 vs. uniprot
Match: A0A836CA23_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA23_9STRA) HSP 1 Score: 405 bits (1041), Expect = 2.040e-133 Identity = 212/294 (72.11%), Postives = 235/294 (79.93%), Query Frame = 2 Query: 494 LGLFSGD-GKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEK-----------IKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRD-----LRHWYELTPESRAHINFKEQQQFGSLWKLLSELPDEPGVLPEEFMN 1324
LG++S D G R++VKPERIIIVRHGES+GN DESTYVHVPDWKIPLTK+G+ + + AG+K IKE++GDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATI +SK ERARFGRFYYRFP+GESGLDVYNRATSFIATMFRDF+NE IARDDLNV+IVTHGLTLRL+VMRWFQYSIADFE T NP NG VVMER+ E +R + A R WYELTPES IN K Q+QFGSLW+LLSELP EP E M+
Sbjct: 66 LGIYSADHGHRKLVKPERIIIVRHGESMGNLDESTYVHVPDWKIPLTKQGYRDARLAGQKXXXXXXXXXXKIKEHVGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIRDSKQERARFGRFYYRFPEGESGLDVYNRATSFIATMFRDFSNEQIARDDLNVVIVTHGLTLRLMVMRWFQYSIADFENTYNPPNGGHVVMERRGGEC--ARLQRTSEAHRGKGPKGGSEAWYELTPESLDLINLKPQRQFGSLWRLLSELPQEPTGTDEREMS 357
BLAST of mRNA_E-siliculosus-1a_F_contig102.185.1 vs. uniprot
Match: A0A7S1XZK9_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZK9_9STRA) HSP 1 Score: 320 bits (819), Expect = 2.080e-99 Identity = 164/293 (55.97%), Postives = 200/293 (68.26%), Query Frame = 2 Query: 497 GLFSGDGKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAG----------------------------MVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHWYELTPESRAHINFKEQQQFGSLWKLLSELPD 1291
G +G G +V+P RII+VRHGES GN D YV+ PDWKIPLTKKG+ + + AG++IKE +GD P++IYTSPYLRTKQTLAG MV A+DTN IVGVREEPRLTEQQFGNFQN+ + S+ +R RFGRFY+RFP+GESGLDVYNR TSFIAT+FRDF+N+ IAR+DL+VIIVTHGLTLRL +MR+F Y+I DFE + NP NG+FVVM+R+E + S WYEL PE R +N Q GSLWK+L E+ D
Sbjct: 72 GYSNGSG---IVRPARIILVRHGESAGNVDPQAYVNTPDWKIPLTKKGWKDARLAGQQIKEIVGDSPIYIYTSPYLRTKQTLAGKGSPQPRSLPLSLAPLPLSSTRPPAPPGMVGAWDTNEIVGVREEPRLTEQQFGNFQNVTNVKESREQRTRFGRFYFRFPEGESGLDVYNRVTSFIATLFRDFSNKDIAREDLDVIIVTHGLTLRLFLMRFFHYTIHDFENSYNPNNGAFVVMQRQEGPEGQS---------------WYELMPEGREALNLPPQNGVGSLWKILQEMND 346
BLAST of mRNA_E-siliculosus-1a_F_contig102.185.1 vs. uniprot
Match: A0A7S2SR22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR22_9STRA) HSP 1 Score: 286 bits (732), Expect = 1.900e-88 Identity = 143/266 (53.76%), Postives = 184/266 (69.17%), Query Frame = 2 Query: 518 KRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARD-----DLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHWYELTPESRAHINFKEQQQFGSLWKLLSELPDEPG 1300
+R +V+P+RI +VRHGESLGN Y++VPDW+I LT++G + + G KI IG+ P+F YTSPY RTK+TL MV F+ + IVGVREEPRLTEQQFGNFQNL I K ER+ +GRFYYRFPQGESG DVY R ++F+ ++RD AN + + DLNV+IV+HGLTLRLL+MRWFQY+I+DFE++ NP N +FVVMER+E + R WYELT ES +N+ + GSLWKL+SEL + G
Sbjct: 35 RRSLVRPKRIFVVRHGESLGNISPEVYINVPDWRISLTEEGKEQAKATGSKISHIIGEDPVFFYTSPYRRTKETLQSMVTEFEQSDIVGVREEPRLTEQQFGNFQNLDEIQICKVERSSYGRFYYRFPQGESGFDVYTRVSTFLPDLYRDAANAELFGEGQTARDLNVVIVSHGLTLRLLLMRWFQYTISDFEQSHNPPNAAFVVMERREDQAHTGR-------------EWYELTEESLKLLNYSPPEHKGSLWKLMSELSHDHG 287
BLAST of mRNA_E-siliculosus-1a_F_contig102.185.1 vs. uniprot
Match: A0A4D9D0Z6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0Z6_9STRA) HSP 1 Score: 276 bits (707), Expect = 1.780e-82 Identity = 128/204 (62.75%), Postives = 159/204 (77.94%), Query Frame = 2 Query: 521 RRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKE 1132
+++ KP RII+VRHGES GN DE YV PDWK+PL+ G + ++ G ++K +GD+PL+IYTSPY RTKQTL+ ++E+F+ N VGVREEPR+TEQQFGNFQ + +K ER FGRFY+RFP GESGLDVY R TSFI+TMFRDFA+ I R DLN++IVTHGLTLRLL+MRWF+ ++ FE T NP NGSFVVM RKE
Sbjct: 170 QQITKPHRIILVRHGESTGNVDERVYVETPDWKVPLSPIGHEQARQTGRQLKALVGDEPLYIYTSPYRRTKQTLSNILESFEDNLKVGVREEPRITEQQFGNFQCQQLMQQAKKERCNFGRFYFRFPNGESGLDVYTRVTSFISTMFRDFADGHICRPDLNIVIVTHGLTLRLLLMRWFKLTVDTFESTTNPPNGSFVVMTRKE 373
BLAST of mRNA_E-siliculosus-1a_F_contig102.185.1 vs. uniprot
Match: A0A7S0SR39_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR39_9STRA) HSP 1 Score: 255 bits (651), Expect = 4.970e-76 Identity = 121/201 (60.20%), Postives = 151/201 (75.12%), Query Frame = 2 Query: 536 PERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDK-PLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIAR---DDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMER 1126
P+RII+VRHGESLGN DE Y +PDWKIPLT+KG + G+KIKE IG+ P+ +Y SPY+RTKQT A M++ N ++ VREEPRLTEQQFGNFQ ++ K ER +FGRFYYRFP GESGLDVY+R +SFI T+FR++A E R +D N+IIVTHGLTLRL +MRWFQ+S+++FE T NP NG +VM R
Sbjct: 45 PKRIILVRHGESLGNVDELAYCSMPDWKIPLTEKGKEQASNVGKKIKEIIGNNSPISVYLSPYIRTKQTFALMIKELSNNNVITVREEPRLTEQQFGNFQKAEDMIRYKKERGQFGRFYYRFPDGESGLDVYSRVSSFIGTLFREWAKEQSTRSNHEDNNIIIVTHGLTLRLFLMRWFQFSVSEFENTRNPNNGDIIVMNR 245
BLAST of mRNA_E-siliculosus-1a_F_contig102.185.1 vs. uniprot
Match: A0A7S3XT41_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT41_HETAK) HSP 1 Score: 247 bits (631), Expect = 1.540e-74 Identity = 124/200 (62.00%), Postives = 145/200 (72.50%), Query Frame = 2 Query: 689 DKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFANESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHWYELTPESRAHINFKEQQQFGSLWKLLSELP 1288
D PL Y SPY RTKQTLAGM+ A +TN I+G REEPRLTEQQFGNFQN+ T SK ERARFGRFYYRFPQGESGLDVYNR+TSFIATM RD AN ++AR L+ +IVTHGLTLRL +MRWFQYS+ DFEE+ NP NG V+ME+ ++ + WYELT +S + FK Q ++GSLWKLL LP
Sbjct: 1 DAPLLFYCSPYRRTKQTLAGMMGALETNDIIGAREEPRLTEQQFGNFQNVLTTRQSKDERARFGRFYYRFPQGESGLDVYNRSTSFIATMHRDMANPALARPGLHSVIVTHGLTLRLFLMRWFQYSVEDFEESHNPPNGGVVIMEKV--------------SDPQGRHEWYELTDDSLELLKFKRQHRYGSLWKLLDGLP 186
BLAST of mRNA_E-siliculosus-1a_F_contig102.185.1 vs. uniprot
Match: A0A7S2IFC4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IFC4_9STRA) HSP 1 Score: 239 bits (609), Expect = 6.500e-70 Identity = 118/243 (48.56%), Postives = 157/243 (64.61%), Query Frame = 2 Query: 533 KPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTN--YIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRDFAN---ESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHWYELTPESRAHINFKEQ 1246
KP+RII+ RHGESLGN D+S Y H DW+IPL++KG + + AG+++ + I ++ FIY SPY RT +T+ M+ +G R EPR+ EQQFGNFQN + S+ ER +FGRF+YRFP GE+GLDVYNR T FI+T+FRD N E +A + LNV++VTHGLTLRL +MRW Q S+ +FEE NP+N VMER+ E + WYELT ES H+ K++
Sbjct: 72 KPKRIILCRHGESLGNVDDSVYTHTADWRIPLSEKGRNQARDAGKRLAKLIQNEKCFIYHSPYARTTETMKEMMSQLKQRPRQCIGTRSEPRMVEQQFGNFQNYEEVQESRDERVKFGRFFYRFPSGEAGLDVYNRVTIFISTLFRDTHNMRKEGVAMEKLNVVVVTHGLTLRLFLMRWLQISVDEFEEMYNPDNAFLAVMERQTSECG--------------TKQWYELTEESAKHLRIKQR 300
BLAST of mRNA_E-siliculosus-1a_F_contig102.185.1 vs. uniprot
Match: A0A7S4UG03_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UG03_9STRA) HSP 1 Score: 237 bits (604), Expect = 3.850e-69 Identity = 121/272 (44.49%), Postives = 172/272 (63.24%), Query Frame = 2 Query: 440 RRFLRGSGQHFPHSDQESLGLFSGDGKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLAGMVEAFDTNYIVGVREEPRLTEQQFGNFQNLATIVNSKAERARFGRFYYRFPQGESGLDVYNRATSFIATMFRD--FAN-ESIARDDLNVIIVTHGLTLRLLVMRWFQYSIADFEETLNPENGSFVVMERKEKEDTDSRFFKDVSAERRDLRHWYELTPESRAHINFKEQ 1246
R F Q+ H E + G ++R P+RII+VRHG+SLGN DE+TY H DW+IPL+ G + + AG ++ I ++ F+Y SPY RT +T+ + + D+ Y +GVR EPR+ EQQFGNFQ + S+ ER +FGRF++RFP GE+G+DV+NR TSFI+T+FRD + N E I+ D+LN+++VTHGLTLRL +MRW Q S+ +FEE NP+NG VMER+ + + WY+LT ES H+ K++
Sbjct: 48 RHFSNDGCQNQQHDTYEQGHYYPGPKQQR---PKRIILVRHGQSLGNVDETTYTHTADWRIPLSDLGRIQARDAGRRLHALIQNEKYFVYHSPYARTTETMEIIKKELDSEYCIGVRSEPRIVEQQFGNFQIYDDVQESRDERRKFGRFFFRFPNGEAGMDVFNRVTSFISTIFRDTHYMNVEGISMDELNIVVVTHGLTLRLFLMRWLQISVDEFEEMYNPDNGFLAVMERQ--------------TSKCGSKQWYKLTQESADHLRIKQR 302 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig102.185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig102.185.1 >prot_E-siliculosus-1a_F_contig102.185.1 ID=prot_E-siliculosus-1a_F_contig102.185.1|Name=mRNA_E-siliculosus-1a_F_contig102.185.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=431bp MFDRKAGLRLGERAGSLGFQSQARQLQTRGCAPTTSTTRAMTTNNMFAVSback to top mRNA from alignment at E-siliculosus-1a_F_contig102:11541..16935+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig102.185.1 ID=mRNA_E-siliculosus-1a_F_contig102.185.1|Name=mRNA_E-siliculosus-1a_F_contig102.185.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5395bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:11541..16935+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig102:11541..16935+ >mRNA_E-siliculosus-1a_F_contig102.185.1 ID=mRNA_E-siliculosus-1a_F_contig102.185.1|Name=mRNA_E-siliculosus-1a_F_contig102.185.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2586bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:11541..16935+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |