mRNA_E-siliculosus-1a_F_contig10197.183.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10197.183.1
Unique NamemRNA_E-siliculosus-1a_F_contig10197.183.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10197.183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10197contigE-siliculosus-1a_F_contig10197:1234..1960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Cds size345
Start0
Stop0
Model size347
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927521.025775-CDS-E-siliculosus-1a_F_contig10197:1234..13321622927521.025775-CDS-E-siliculosus-1a_F_contig10197:1234..1332Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10197 1235..1332 -
1696318565.998577-CDS-E-siliculosus-1a_F_contig10197:1234..13321696318565.998577-CDS-E-siliculosus-1a_F_contig10197:1234..1332Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10197 1235..1332 -
1622927521.0354269-CDS-E-siliculosus-1a_F_contig10197:1713..19601622927521.0354269-CDS-E-siliculosus-1a_F_contig10197:1713..1960Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10197 1714..1960 -
1696318566.0084386-CDS-E-siliculosus-1a_F_contig10197:1713..19601696318566.0084386-CDS-E-siliculosus-1a_F_contig10197:1713..1960Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10197 1714..1960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10197.183.1prot_E-siliculosus-1a_F_contig10197.183.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10197 1235..1960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10197.183.1

>prot_E-siliculosus-1a_F_contig10197.183.1 ID=prot_E-siliculosus-1a_F_contig10197.183.1|Name=mRNA_E-siliculosus-1a_F_contig10197.183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=115bp
EASTRRRNQCATDEDSARFRAHTIDTTTPSVTPGSPYHSTFHAEPILSAG
RDAILYTNQRRRRRQRLKGWTGPLNHDDQVPSGGSRTTTSTGQQRRTGAE
RDQQQQQWPRRAGGG
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mRNA from alignment at E-siliculosus-1a_F_contig10197:1234..1960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10197.183.1 ID=mRNA_E-siliculosus-1a_F_contig10197.183.1|Name=mRNA_E-siliculosus-1a_F_contig10197.183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=727bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10197:1234..1960- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAAGCGTCCACGCGCCGTCGAAACCAGTGTGCCACCGACGAAGACTCGGC
ACGGTTTAGAGCGCATACCATCGACACAACGACTCCATCAGTGACACCGG
GGTCTCCATATCATTCCACATTCCATGCCGAACCAATCCTCTCGGCAGGC
AGGGACGCCATCCTCTACACCAATCAGCGAAGGCGCAGAAGACAAAGGTT
GAAAGGTTGGACAGGGCCACTCAACCATGATGACCAAGTACCCTCAGGTA
GAACGCTGTTCGAGAGGAAGGGGGAACGGAAGAGAGCCCTGTGCGGTGTA
TGAAGATCTCGGCGCTCTTGTCAACCAGAACGATTTGCTTGTTTTTTCGT
ATGGAAAATAGAGCAGGTTCTGTGACGTGTCTCCTCCTCGCTTCTCAGAA
CAATCCCTGCTCCTGCTTGAACCAAAAACGAAGAACATTTTTTCATTTTT
TGGCGTGATGGTTCTCCCCACAGCGCACAGCAGTACACGGGCCTGCACAG
CAGTAGAACACTCATACGCCCCAACCAGCGTGCGTTCTGTGCATGTACCT
CCTCTGCCCCGCCTGCCTCCGGTGTCATTAACCATTTGATCGCGACGACA
TCTGCCCATCGTGCACTACGGTGTGAAGGTGGTTCCAGAACAACCACTTC
AACGGGCCAACAACGCAGAACTGGAGCCGAGCGAGATCAACAACAACAGC
AGTGGCCGAGGAGAGCGGGAGGAGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10197:1234..1960-

>mRNA_E-siliculosus-1a_F_contig10197.183.1 ID=mRNA_E-siliculosus-1a_F_contig10197.183.1|Name=mRNA_E-siliculosus-1a_F_contig10197.183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10197:1234..1960- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAAGCGTCCACGCGCCGTCGAAACCAGTGTGCCACCGACGAAGACTCGGC
ACGGTTTAGAGCGCATACCATCGACACAACGACTCCATCAGTGACACCGG
GGTCTCCATATCATTCCACATTCCATGCCGAACCAATCCTCTCGGCAGGC
AGGGACGCCATCCTCTACACCAATCAGCGAAGGCGCAGAAGACAAAGGTT
GAAAGGTTGGACAGGGCCACTCAACCATGATGACCAAGTACCCTCAGGAA
GCGTCCACGCGCCGTCGAAACCAGTGTGCCACCGACGAAGACTCGGCACG
GTTTAGAGCGCATACCATCGACACAACGACTCCATCAGTGACACCGGGGT
CTCCATATCATTCCACATTCCATGCCGAACCAATCCTCTCGGCAGGCAGG
GACGCCATCCTCTACACCAATCAGCGAAGGCGCAGAAGACAAAGGTTGAA
AGGTTGGACAGGGCCACTCAACCATGATGACCAAGTACCCTCAGGTGGTT
CCAGAACAACCACTTCAACGGGCCAACAACGCAGAACTGGAGCCGAGCGA
GATCAACAACAACAGCAGTGGCCGAGGAGAGCGGGAGGAGGAGTGGTTCC
AGAACAACCACTTCAACGGGCCAACAACGCAGAACTGGAGCCGAGCGAGA
TCAACAACAACAGCAGTGGCCGAGGAGAGCGGGAGGAGGA
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