mRNA_E-siliculosus-1a_F_contig1019.180.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1019.180.1 vs. uniprot
Match: A0A6H5KZA5_9PHAE (LITAF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZA5_9PHAE) HSP 1 Score: 328 bits (841), Expect = 1.730e-106 Identity = 223/251 (88.84%), Postives = 229/251 (91.24%), Query Frame = 1 Query: 109 MASRSGYKSLPDSAADEDARTADAEQPQQVAAAGARRPAVPGKGEDPPEVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAASSADRGGGELPTAQGVFVGDPVSQSTPYHAAPPARATVITSAPASYEHVAAXXXXXXXXXXXXIAVPSGXXXQHTVIVMNAPPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDPCSNMPILAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHISVGRSRQFN 861
MASRSGYKSLPDSAA+EDARTADAEQ QVAAAGA RPA PGKGEDP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ELPTAQG+FVGDPVSQSTPYHAAPPA ATVITSAPASY+HVAAXXXXXXXXXX IAVPSGXXXQHTVIVMNAPPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDPCSN+PILAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCH+SVGRSRQF+
Sbjct: 1 MASRSGYKSLPDSAAEEDARTADAEQ--QVAAAGAPRPAAPGKGEDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---ELPTAQGIFVGDPVSQSTPYHAAPPAHATVITSAPASYDHVAAXXXXXXXXXXG-IAVPSGXXXQHTVIVMNAPPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDPCSNIPILAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHVSVGRSRQFD 245
BLAST of mRNA_E-siliculosus-1a_F_contig1019.180.1 vs. uniprot
Match: UPI001E6894C5 (uncharacterized protein LOC123879585 n=1 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E6894C5) HSP 1 Score: 60.1 bits (144), Expect = 3.320e-6 Identity = 41/135 (30.37%), Postives = 60/135 (44.44%), Query Frame = 1 Query: 478 ITSAPASYEHVAAXXXXXXXXXXXXIAVPSGXXXQHT----------VIVMNA-PPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDP--CSNMPILAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHISVG 843
+ SAP SY V +PS QHT + V N PPP + +G P A VC CG+TG+++ + C++ L A CL+ CW C+ +P+L+ +D H C NC +G
Sbjct: 157 LISAPPSYSFVLRQMAVRRRPRLMGTFIPSPSYIQHTPPPNYATAFDIYVDNPLPPPPARVYNFGFTPMAIVCPECGYTGMTVVASKITLCTH---LCACILCLLCCWICAPLPYLLRSCKDVYHYCRNCRNFLG 288
BLAST of mRNA_E-siliculosus-1a_F_contig1019.180.1 vs. uniprot
Match: A0A7S2FLP8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLP8_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 5.280e-6 Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 1 Query: 634 WGRQPQAFVCRACGFTGLSLTMTDPCSNMPILAAACCCLVGC-WPCSFVPFLIPELRDTVHRCPNCHISVGRS 849
+GRQP C +C S+ T+P M + A C +GC + C +PF + + HRCP+CHIS+G+S
Sbjct: 83 FGRQPTRCFCHSCNKEVQSMVTTEP-GLMAVGACVLLCCIGCDFGCCLIPFCVDGCKVAHHRCPDCHISLGKS 154
BLAST of mRNA_E-siliculosus-1a_F_contig1019.180.1 vs. uniprot
Match: A0A8J9V3R1_9NEOP ((lesser marbled fritillary) hypothetical protein (Fragment) n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9V3R1_9NEOP) HSP 1 Score: 59.3 bits (142), Expect = 6.280e-6 Identity = 40/133 (30.08%), Postives = 59/133 (44.36%), Query Frame = 1 Query: 478 ITSAPASYEHVAAXXXXXXXXXXXXIAVPSGXXXQHT----------VIVMNA-PPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDPCSNMPILAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHISVG 843
+TSAP SY V +PS QHT + V NA PPP + +G P +C CGFTG+++ + + L A CL+ CW C+ +P+++ +D H C NC +G
Sbjct: 165 LTSAPPSYSFVLRQMGARRPRLMGTF-IPSPSFVQHTPPPNYATAFDIYVDNAIPPPPPRVHNFGLTPTPIICPECGFTGMTV-VASKITLSTHLCAIILCLLCCWVCAPLPYVLRSCKDVYHYCRNCRSFLG 295
BLAST of mRNA_E-siliculosus-1a_F_contig1019.180.1 vs. uniprot
Match: UPI00156879E2 (uncharacterized protein LOC117994925 n=1 Tax=Aphantopus hyperantus TaxID=2795564 RepID=UPI00156879E2) HSP 1 Score: 58.9 bits (141), Expect = 7.870e-6 Identity = 41/135 (30.37%), Postives = 60/135 (44.44%), Query Frame = 1 Query: 478 ITSAPASYEHVAAXXXXXXXXXXXXIAVPSGXXXQHT----------VIVMNA-PPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDP--CSNMPILAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHISVG 843
+ SAP SY V +PS QHT + V N PPP + +G P A VC CG+TG+++ + C++ L A CL+ CW C+ +P+L+ +D H C NC +G
Sbjct: 156 LISAPPSYSFVLRQMAVRRRPRLMGTFIPSPSYIQHTPPPNYATAFDIYVDNPLPPPPTRVYNFGFTPIAIVCPDCGYTGMTIVASKITLCTH---LCACILCLLCCWICAPLPYLLRSCKDVYHYCRNCRNFLG 287
BLAST of mRNA_E-siliculosus-1a_F_contig1019.180.1 vs. uniprot
Match: UPI0019D31437 (uncharacterized protein LOC120635560 n=1 Tax=Pararge aegeria TaxID=116150 RepID=UPI0019D31437) HSP 1 Score: 58.9 bits (141), Expect = 8.100e-6 Identity = 40/135 (29.63%), Postives = 60/135 (44.44%), Query Frame = 1 Query: 478 ITSAPASYEHVAAXXXXXXXXXXXXIAVPSGXXXQHT----------VIVMNA-PPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDP--CSNMPILAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHISVG 843
+TSAP SY V +PS QHT + V N PPP + +G P VC CG+TG+++ + C++ L A CL+ CW C+ +P+++ +D H C NC +G
Sbjct: 156 LTSAPPSYSFVLRQMAVRRRPRLMGTFIPSPSYIQHTPPPNYTTAFDIYVDNPLPPPPPRVYNFGFTPVTIVCPECGYTGMTVVASKITLCTH---LCAVTLCLLCCWICAPLPYVLRSCKDVYHYCRNCRNFLG 287
BLAST of mRNA_E-siliculosus-1a_F_contig1019.180.1 vs. uniprot
Match: UPI00067E15F3 (uncharacterized protein LOC106141597 n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067E15F3) HSP 1 Score: 59.7 bits (143), Expect = 9.320e-6 Identity = 38/130 (29.23%), Postives = 55/130 (42.31%), Query Frame = 1 Query: 484 SAPASYEHVAAXXXXXXXXXXXXIAVPSGXXXQHT----------VIVMNAPPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDPCSNMPILAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHISVG 843
SAP SY V +PS QHT + + N PPP + +G P VC CGFTG++ +T + L A C++ CW C +P+++ +D H C NC +G
Sbjct: 357 SAPPSYSFVLRQMAVRRRPRMFGTFIPSPSFVQHTPPPTYTASFDIYLDNVPPPPTRVYNFGFAPMLVVCPDCGFTGMT-QVTSKITLCTHLCAIVLCIMCCWICVPLPYIMRSCKDVSHYCRNCRSFLG 485
BLAST of mRNA_E-siliculosus-1a_F_contig1019.180.1 vs. uniprot
Match: A0A2W1BPF2_HELAM (LITAF domain-containing protein n=2 Tax=Helicoverpa TaxID=7112 RepID=A0A2W1BPF2_HELAM) HSP 1 Score: 58.9 bits (141), Expect = 1.190e-5 Identity = 38/134 (28.36%), Postives = 56/134 (41.79%), Query Frame = 1 Query: 478 ITSAPASYEHVAAXXXXXXXXXXXXIAVPSGXXXQHT------------VIVMNAPPPGHQFGEWGRQPQAFVCRACGFTGLSLTMTDPCSNMPILAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHISVG 843
+TSAP SY V PS HT + N PPP + +G P VC CG+TG+++ +T + L A CL+ CW C+ +P+++ +D H C NC +G
Sbjct: 231 LTSAPPSYSFVLRQMAVRRRPRFMGTFYPSPSFVPHTPPPTYTTAFDVYIEPANVPPPPARVYTFGFAPMPIVCPECGYTGMTV-VTSRITICTHLCALILCLLCCWICAPLPYILRSCKDVYHYCRNCRSFLG 363
BLAST of mRNA_E-siliculosus-1a_F_contig1019.180.1 vs. uniprot
Match: A0A2W1BSY9_HELAM (LITAF domain-containing protein n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=A0A2W1BSY9_HELAM) HSP 1 Score: 55.1 bits (131), Expect = 2.360e-5 Identity = 26/63 (41.27%), Postives = 35/63 (55.56%), Query Frame = 1 Query: 658 VCRACGFTGLSLTMTDPCSNMPI-LAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHISVG 843
C +C +T + SNM L AA C+VGCWPC+FVP+ + R+ H CPNC +G
Sbjct: 90 TCPSCNHQ--IVTRVEYKSNMRTHLFAALLCIVGCWPCAFVPYFVDSCRNADHYCPNCSAYIG 150
BLAST of mRNA_E-siliculosus-1a_F_contig1019.180.1 vs. uniprot
Match: A0A2A4JWY3_HELVI (LITAF domain-containing protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4JWY3_HELVI) HSP 1 Score: 53.9 bits (128), Expect = 5.920e-5 Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 1 Query: 727 LAAACCCLVGCWPCSFVPFLIPELRDTVHRCPNCHISVG 843
L AA C++GCWPC+FVP+ + R+ H CPNC+ +G
Sbjct: 112 LFAALLCVIGCWPCAFVPYFVDSCRNADHYCPNCNSYIG 150 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1019.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1019.180.1 >prot_E-siliculosus-1a_F_contig1019.180.1 ID=prot_E-siliculosus-1a_F_contig1019.180.1|Name=mRNA_E-siliculosus-1a_F_contig1019.180.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=252bp MASRSGYKSLPDSAADEDARTADAEQPQQVAAAGARRPAVPGKGEDPPEVback to top mRNA from alignment at E-siliculosus-1a_F_contig1019:23945..26831- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1019.180.1 ID=mRNA_E-siliculosus-1a_F_contig1019.180.1|Name=mRNA_E-siliculosus-1a_F_contig1019.180.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2887bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1019:23945..26831- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1019:23945..26831- >mRNA_E-siliculosus-1a_F_contig1019.180.1 ID=mRNA_E-siliculosus-1a_F_contig1019.180.1|Name=mRNA_E-siliculosus-1a_F_contig1019.180.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1512bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1019:23945..26831- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |