mRNA_E-siliculosus-1a_F_contig1293.1786.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1293.1786.1 vs. uniprot
Match: A0A6H5KSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE) HSP 1 Score: 285 bits (729), Expect = 4.710e-92 Identity = 149/217 (68.66%), Postives = 170/217 (78.34%), Query Frame = 1
Query: 4 KVGHDSSDYEVQCTGVKSRESTRRQARAFYSGDVRKVADLARVSVICNTPEALKEAYLAIIGLLEGDVLRVSNGFISDWMPGGYRGVKLNPVVNEHLCEIQLSLRKFFMLRGSQHALYEFARDLEVTTHMRAEHLFSNLSPDVTKEMLRLAGLNWRGSGYCLPDLQFAAGQYDLANNGFQQQLRDAEYKA-REFEDQTSKESRRALLRANTAREKLA 651
KV HDSS Y+VQC VKS ESTRR+A GDVRKVAD+ARV+VIC TPEALKEAYLAI+GL E +VLRV NGF SDWMP GYR VKLNPVVN+HLCEIQL LR+FF L+G QH +YE+AR+L VTT MR E LF N+SP+V KEM+RLAG NWR +G+CLPDLQ AAGQYD A ++ L DAE A R ED SKESR+ALLR N AR +LA
Sbjct: 118 KVAHDSSKYKVQCADVKSWESTRRKASNSCGGDVRKVADMARVAVICATPEALKEAYLAIMGLPEANVLRVKNGFNSDWMPSGYRDVKLNPVVNDHLCEIQLHLREFFALKGGQHVVYEWARELNVTTEMRGEDLFKNVSPEVMKEMMRLAGQNWRETGFCLPDLQLAAGQYDRAEESHRELLGDAENDAARVAEDHDSKESRQALLRVNAARARLA 334
BLAST of mRNA_E-siliculosus-1a_F_contig1293.1786.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE) HSP 1 Score: 290 bits (742), Expect = 9.520e-90 Identity = 149/217 (68.66%), Postives = 174/217 (80.18%), Query Frame = 1
Query: 1 MKVGHDSSDYEVQCTGVKSRESTRRQARAFYSGDVRKVADLARVSVICNTPEALKEAYLAIIGLLEGDVLRVSNGFISDWMPGGYRGVKLNPVVNEHLCEIQLSLRKFFMLRGSQHALYEFARDLEVTTHMRAEHLFSNLSPDVTKEMLRLAGLNWRGSGYCLPDLQFAAGQYDLANNGFQQQLRDAEYKAREFEDQTSKESRRALLRANTAREKLA 651
M V HDSS YEVQC +KSRESTRR+A Y GDVRKVAD+ARV+VIC TPEALKEAYLAI+ L E VLRV NGF SDWMP GYR VKLNPVVN+HLCEIQL LR FF L+G QHA+YE+AR+L VTT MR++ LF NLSP+V++EM+RLAG NW G+ Y LPD+Q AGQYDLA +Q+L DAE++AREFED S+ESRRA+ NTAR +LA
Sbjct: 118 MNVAHDSSKYEVQCVEIKSRESTRRKASTGYDGDVRKVADMARVTVICATPEALKEAYLAIMELPE--VLRVKNGFNSDWMPSGYRDVKLNPVVNDHLCEIQLHLRGFFELKGGQHAVYEWARELNVTTDMRSKDLFKNLSPEVSEEMIRLAGQNWAGTAYVLPDVQLDAGQYDLAEKSHRQELADAEHEAREFEDHDSEESRRAMHGENTARSRLA 332
BLAST of mRNA_E-siliculosus-1a_F_contig1293.1786.1 vs. uniprot
Match: D7G1L3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L3_ECTSI) HSP 1 Score: 283 bits (723), Expect = 3.230e-87 Identity = 150/217 (69.12%), Postives = 164/217 (75.58%), Query Frame = 1
Query: 1 MKVGHDSSDYEVQCTGVKSRESTRRQARAFYSGDVRKVADLARVSVICNTPEALKEAYLAIIGLLEGDVLRVSNGFISDWMPGGYRGVKLNPVVNEHLCEIQLSLRKFFMLRGSQHALYEFARDLEVTTHMRAEHLFSNLSPDVTKEMLRLAGLNWRGSGYCLPDLQFAAGQYDLANNGFQQQLRDAEYKAREFEDQTSKESRRALLRANTAREKLA 651
M V HD S YEVQ VKSRESTRR+A F GDVRKVAD+ARV+VIC TPEALKEAYLAI+ L VL + NGF SDWMP GYR VKLNPVVNEHLCEIQL LR+FF L+G QHA+YE+ARDL VTT MR E LF LS VTKEML LAG NWRG+GY LPDLQ AAG+YDLA +Q L DAE + RE ED SKESR AL R N AR +LA
Sbjct: 118 MNVAHDMSKYEVQFVDVKSRESTRRKASRFCDGDVRKVADIARVTVICTTPEALKEAYLAIMELPTQQVLLIKNGFKSDWMPSGYRDVKLNPVVNEHLCEIQLHLREFFALKGGQHAVYEWARDLNVTTDMRCEDLFETLSAKVTKEMLHLAGENWRGTGYVLPDLQLAAGEYDLAEKSQRQALTDAENEVREVEDHDSKESRWALDRENEARSRLA 334
BLAST of mRNA_E-siliculosus-1a_F_contig1293.1786.1 vs. uniprot
Match: A0A6H5K147_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K147_9PHAE) HSP 1 Score: 271 bits (693), Expect = 4.920e-81 Identity = 141/217 (64.98%), Postives = 164/217 (75.58%), Query Frame = 1
Query: 4 KVGHDSSDYEVQCTGVKSRESTRRQARAFYSGDVRKVADLARVSVICNTPEALKEAYLAIIGLLEGD-VLRVSNGFISDWMPGGYRGVKLNPVVNEHLCEIQLSLRKFFMLRGSQHALYEFARDLEVTTHMRAEHLFSNLSPDVTKEMLRLAGLNWRGSGYCLPDLQFAAGQYDLANNGFQQQLRDAEYKAREFEDQTSKESRRALLRANTAREKLA 651
K+ HDS + VQ VKSR+ TR +AR GDVRKVAD+ARV+V+C TPEALKE Y AI GL + VLRV NGF SDWMP GYR VK+NPVVN HLCEIQL LR+FF L+G QHA+Y++AR+L V +RAE+L+ NLS +VTKEM+RLAG NWRG+GYCLPDLQ AAGQYDL Q+L DAE K ED SKESRRALLR NTAR +LA
Sbjct: 215 KIAHDSCKFVVQYVDVKSRDRTREKARKSCGGDVRKVADMARVTVVCATPEALKEVYSAITGLPKPHHVLRVKNGFNSDWMPSGYRDVKVNPVVNNHLCEIQLQLREFFALKGGQHAVYKWARELNVVADLRAEYLYKNLSIEVTKEMMRLAGQNWRGTGYCLPDLQVAAGQYDLVEKDLGQRLTDAERKTHGVEDHGSKESRRALLRLNTARARLA 431
BLAST of mRNA_E-siliculosus-1a_F_contig1293.1786.1 vs. uniprot
Match: D7FH93_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH93_ECTSI) HSP 1 Score: 248 bits (634), Expect = 3.240e-76 Identity = 124/181 (68.51%), Postives = 143/181 (79.01%), Query Frame = 1
Query: 4 KVGHDSSDYEVQCTGVKSRESTRRQARAFYSGDVRKVADLARVSVICNTPEALKEAYLAIIGLLEGDVLRVSNGFISDWMPGGYRGVKLNPVVNEHLCEIQLSLRKFFMLRGSQHALYEFARDLEVTTHMRAEHLFSNLSPDVTKEMLRLAGLNWRGSGYCLPDLQFAAGQYDLANNGFQQ 546
KV HDSS YEVQ VKSRESTRR+A + GDVRKVAD+ARV++IC PEALKEAY +I+ + E VLR+ NGF SDWMP GYR VKLNPVVNEHLCEIQL LR+FF L+G QH +Y++ARDL VTT MR+E L NLSP+V+KEML LAG NWRG+ Y LPDLQ AAGQYDLA +Q
Sbjct: 118 KVAHDSSKYEVQRAEVKSRESTRRKASREHDGDVRKVADMARVTLICANPEALKEAYSSIMEMPEQHVLRIKNGFNSDWMPSGYRDVKLNPVVNEHLCEIQLHLREFFALKGGQHEVYKWARDLNVTTGMRSEDLIKNLSPEVSKEMLHLAGENWRGTAYVLPDLQLAAGQYDLAEKSHRQ 298
BLAST of mRNA_E-siliculosus-1a_F_contig1293.1786.1 vs. uniprot
Match: A0A6H5JHK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK0_9PHAE) HSP 1 Score: 236 bits (602), Expect = 2.220e-74 Identity = 117/180 (65.00%), Postives = 141/180 (78.33%), Query Frame = 1
Query: 7 VGHDSSDYEVQCTGVKSRESTRRQARAFYSGDVRKVADLARVSVICNTPEALKEAYLAIIGLLEGDVLRVSNGFISDWMPGGYRGVKLNPVVNEHLCEIQLSLRKFFMLRGSQHALYEFARDLEVTTHMRAEHLFSNLSPDVTKEMLRLAGLNWRGSGYCLPDLQFAAGQYDLANNGFQQ 546
+ + + EV C VKSR ST+R+A Y GDVRKVAD+ARVSVIC+ PEALK AYLAI+ +GDVLRV+NGF SDWMP GYR VK+NPVV+EHLCEIQL LR+FF L+G QHA+YE+ARDL+VTT MRAE+LF LS ++T+EM+ LA NW G+G LP LQ AAGQYD A GF+Q
Sbjct: 119 IAKHTGECEVHCAEVKSRASTQRKASKSYGGDVRKVADMARVSVICDNPEALKRAYLAIVESFQGDVLRVANGFNSDWMPSGYRDVKVNPVVDEHLCEIQLHLREFFTLKGGQHAVYEWARDLKVTTIMRAENLFEFLSREITEEMIGLAERNWHGTGRFLPRLQLAAGQYDQAEEGFRQ 298
BLAST of mRNA_E-siliculosus-1a_F_contig1293.1786.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE) HSP 1 Score: 254 bits (648), Expect = 2.800e-74 Identity = 129/212 (60.85%), Postives = 159/212 (75.00%), Query Frame = 1
Query: 1 MKVGHDSSDYEVQCTGVKSRESTRRQARAFYSGDVRKVADLARVSVICNTPEALKEAYLAIIGLLEGDVLRVSNGFISDWMPGGYRGVKLNPVVNEHLCEIQLSLRKFFMLRGSQHALYEFARDLEVTTHMRAEHLFSNLSPDVTKEMLRLAGLNWRGSGYCLPDLQFAAGQYDLANNGFQQQLRDAEYKAREFEDQTSKESRRALLRANTA 636
+ + D+ +V C VKSR ST+R+AR Y GDVRKV D+ARVSVIC+TPEALK AYLAI+ +GDVLRV+NGF SDWMP GYR VK+NPVVNEH+CEIQL LR+FF L+ QHA+YE+ARDL+VTT +RAE+LF LS D+T+EM+RLA NW G+G LP LQ AGQYD A G++Q+L +AE R ED + ESR A LR+ A
Sbjct: 1544 VDIAKDTGGCQVHCAEVKSRASTQRKARKSYDGDVRKVTDMARVSVICDTPEALKRAYLAIVESFQGDVLRVANGFNSDWMPSGYRDVKVNPVVNEHICEIQLHLREFFTLKSDQHAVYEWARDLKVTTMLRAENLFDFLSRDITEEMIRLAQRNWHGTGRFLPRLQLDAGQYDQAEKGYRQKLSEAEDNRRGVEDNGNTESREASLRSAKA 1755
BLAST of mRNA_E-siliculosus-1a_F_contig1293.1786.1 vs. uniprot
Match: D7FGT0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT0_ECTSI) HSP 1 Score: 250 bits (639), Expect = 6.870e-74 Identity = 128/202 (63.37%), Postives = 154/202 (76.24%), Query Frame = 1
Query: 31 EVQCTGVKSRESTRRQARAFYSGDVRKVADLARVSVICNTPEALKEAYLAIIGLLEGDVLRVSNGFISDWMPGGYRGVKLNPVVNEHLCEIQLSLRKFFMLRGSQHALYEFARDLEVTTHMRAEHLFSNLSPDVTKEMLRLAGLNWRGSGYCLPDLQFAAGQYDLANNGFQQQLRDAEYKAREFEDQTSKESRRALLRANTA 636
+VQC VKSR ST+R+AR Y DVRKVAD+ARVSVIC+TPE K AYLAI+ +GDVLRV+NGF SDWMP GYR VK+NPVVNEHLCEIQL L FF L+ QHA+YE+ARDL+VTT +RAE+LF LS D+T+EM+RLA NW G+G LP LQ AGQYD A GF+Q+L +AE R ED+ +KESR+ LR+ A
Sbjct: 127 QVQCAEVKSRASTQRKARKSYGADVRKVADMARVSVICDTPETFKRAYLAIVESFQGDVLRVANGFNSDWMPSGYRDVKVNPVVNEHLCEIQLHLHDFFTLKSDQHAVYEWARDLKVTTMLRAENLFDFLSRDITEEMIRLAQRNWHGTGRFLPRLQLDAGQYDQAEKGFRQELSEAEDNKRGVEDKDNKESRKKSLRSAKA 328
BLAST of mRNA_E-siliculosus-1a_F_contig1293.1786.1 vs. uniprot
Match: A0A6H5KZG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG4_9PHAE) HSP 1 Score: 244 bits (623), Expect = 7.510e-74 Identity = 131/214 (61.21%), Postives = 156/214 (72.90%), Query Frame = 1
Query: 7 VGHDSSDYEVQCTGVKSRESTRRQARAFYSGDVRKVADLARVSVICNTPEALKEAYLAIIGLLEGDVLRVSNGFISDWMPGGYRGVKLNPVVNEHLCEIQLSLRKFFMLRGSQHALYEFARDLEVTTHMRAEHLFSNLSPDVTKEMLRLAGLNWRGSGYCLPDLQFAAGQYDLANNGFQQQLRDAEYKAREFEDQTSKESRRALLRANTAREKL 648
+ D YEVQ VKSREST+R+ R FY GDVRKVAD+ARVSVIC TPE L+ Y I+G L DV RV+NGF +DWMPGGYR VK+NPVVNEHLCEIQL L F +L+ QHA+YE+ARDL+VT+ MRA LFS LS +VT+EM+RLA W +GYCLP+L A+GQYD A G +QQL +AE + ED S +SRRALL NTAR L
Sbjct: 120 LADDWGRYEVQHVEVKSRESTQRKVRRFYGGDVRKVADMARVSVICLTPEDLQHVYSDIMGSL--DVRRVTNGFNNDWMPGGYRDVKMNPVVNEHLCEIQLHLGDFSVLKSDQHAVYEWARDLKVTSKMRATDLFSTLSREVTEEMIRLARQGWFRTGYCLPELLLASGQYDQAEEGLRQQLSEAENDKQGVEDDDSNKSRRALLGVNTARSNL 331
BLAST of mRNA_E-siliculosus-1a_F_contig1293.1786.1 vs. uniprot
Match: D7FXH0_ECTSI (Tetratricopeptide repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI) HSP 1 Score: 243 bits (619), Expect = 1.650e-70 Identity = 123/203 (60.59%), Postives = 154/203 (75.86%), Query Frame = 1
Query: 7 VGHDSSDYEVQCTGVKSRESTRRQARAFYSGDVRKVADLARVSVICNTPEALKEAYLAIIGLLEGDVLRVSNGFISDWMPGGYRGVKLNPVVNEHLCEIQLSLRKFFMLRGSQHALYEFARDLEVTTHMRAEHLFSNLSPDVTKEMLRLAGLNWRGSGYCLPDLQFAAGQYDLANNGFQQQLRDAEYKAREFEDQTSKESRRA 615
+ + + EV C VKSR T+R+AR Y GDVRKVAD+AR+SVIC+ P+ALK AYLAI+ +GDVLRV+NGF SDWMP GYR VK+NPVV++HLCEIQL LR+FF L+ SQHA+YE+ARDL+VTT +RAE+LF LS ++T+EM+ LA NW G+G LP LQ AAGQYD A GF+Q+L +A+ R ED S ESR A
Sbjct: 119 IAEHTGECEVHCAEVKSRAITQRKARKSYGGDVRKVADMARISVICDNPQALKRAYLAIVESFQGDVLRVANGFNSDWMPSGYRDVKVNPVVDDHLCEIQLHLREFFTLKSSQHAVYEWARDLKVTTIVRAENLFGVLSREITEEMIGLAQRNWHGTGRFLPRLQLAAGQYDQAEKGFRQKLSEADNNERGEEDNGSTESREA 321 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1293.1786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1293.1786.1 >prot_E-siliculosus-1a_F_contig1293.1786.1 ID=prot_E-siliculosus-1a_F_contig1293.1786.1|Name=mRNA_E-siliculosus-1a_F_contig1293.1786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=217bp MKVGHDSSDYEVQCTGVKSRESTRRQARAFYSGDVRKVADLARVSVICNTback to top mRNA from alignment at E-siliculosus-1a_F_contig1293:10824..12778+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1293.1786.1 ID=mRNA_E-siliculosus-1a_F_contig1293.1786.1|Name=mRNA_E-siliculosus-1a_F_contig1293.1786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1955bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1293:10824..12778+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1293:10824..12778+ >mRNA_E-siliculosus-1a_F_contig1293.1786.1 ID=mRNA_E-siliculosus-1a_F_contig1293.1786.1|Name=mRNA_E-siliculosus-1a_F_contig1293.1786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1302bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1293:10824..12778+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |