mRNA_E-siliculosus-1a_F_contig12910.1779.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12910.1779.1
Unique NamemRNA_E-siliculosus-1a_F_contig12910.1779.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: D7FJ33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ33_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 5.510e-49
Identity = 85/96 (88.54%), Postives = 87/96 (90.62%), Query Frame = 1
Query:    1 MASSSHDFDDGGSDDASSLQADPRTEIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGR 288
            MASSSHDFDDGG DDAS LQ DPRTEIKSLIRNVKTP +FAFGSSLLAPSPKLTVQGLG ISLPLS EDVG+LRGAAERAPFGHGAET VDE V R
Sbjct:    1 MASSSHDFDDGGGDDASLLQVDPRTEIKSLIRNVKTPESFAFGSSLLAPSPKLTVQGLGSISLPLSNEDVGTLRGAAERAPFGHGAETKVDESVRR 96          
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: D7FJ30_ECTSI (Catalase is an enzyme, present in all aerobic cells, that decomposes hydrogen peroxide to molecular n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ30_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 6.170e-41
Identity = 77/96 (80.21%), Postives = 83/96 (86.46%), Query Frame = 1
Query:    1 MASSSHDFDDGGSDDASSLQADPRTEIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGR 288
            MASSSH +DDGGSDDAS +Q +PR E+K  IRNV+TPGTFAFGSSLLAPSPKLTVQGLG ISLPLS E VG+LRGAAERAPFGHG ET VDE V R
Sbjct:    1 MASSSHGYDDGGSDDAS-VQLNPRQEVKRFIRNVETPGTFAFGSSLLAPSPKLTVQGLGSISLPLSNEHVGALRGAAERAPFGHGTETKVDESVRR 95          
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: D7FGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP4_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 9.360e-23
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 3
Query:  276 VRRAWQIDGSLLGLSNEFAQAVGKKYALHAAEKLGLRAKALGVEARLYKLVM 431
            +RRAWQIDGSLLGLSNE AQAVGKKYALHAAE+LGLR KALGVEARLYKLV+
Sbjct:   11 LRRAWQIDGSLLGLSNEVAQAVGKKYALHAAEELGLRTKALGVEARLYKLVI 62          
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: A0A835YA66_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YA66_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 1.000e-9
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   76 EIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGRGR 294
            +++  +  V+T G+FA    L A  P+L VQGLG IS+PLSR+D  SL    + APFG G ET  D+ V RG+
Sbjct:   11 QLQEALDGVQTCGSFAATGLLAAKQPRLAVQGLGTISVPLSRKDAASLLRVGKIAPFGFGNETVQDQSVRRGK 83          
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI00192C3A8B (2OG-Fe(II) oxygenase n=1 Tax=Thiothrix subterranea TaxID=2735563 RepID=UPI00192C3A8B)

HSP 1 Score: 58.9 bits (141), Expect = 2.320e-7
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   64 DPRTEIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGRGRSTAP 306
            D  T++ S++  V+ PG F    ++    P+L V+G+G I+LPL  + + +L  AAE+AP+G G ET VD  V +    AP
Sbjct:    3 DLNTQLVSILSRVRRPGNFYASGNVDFALPRLEVEGVGNIALPLLPQQISALVQAAEQAPYGKGEETLVDTSVRKTWQIAP 83          
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI001B7FE1B8 (2OG-Fe(II) oxygenase n=1 Tax=Azohydromonas australica TaxID=364039 RepID=UPI001B7FE1B8)

HSP 1 Score: 58.5 bits (140), Expect = 3.150e-7
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   76 EIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGR 288
            E+ +L+  V+TPG F     +    P+LTVQG+G ++LPL       L   A+RAP+G G ET VD  V R
Sbjct:    6 ELPALLSTVRTPGDFYTAGVIELSLPRLTVQGVGAVALPLLPVQAEQLIAIADRAPYGRGTETIVDTSVRR 76          
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI001BE8BF34 (2OG-Fe(II) oxygenase n=1 Tax=Variovorax paradoxus TaxID=34073 RepID=UPI001BE8BF34)

HSP 1 Score: 57.4 bits (137), Expect = 7.950e-7
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 1
Query:   76 EIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGR 288
            ++  ++   +TPG +    +   P P+L V G+G I+LPL     G L G AERAP+G G ET VD  V R
Sbjct:    7 DLAMVLSTARTPGEYYATGACAIPLPRLEVNGVGPIALPLLPTQAGQLIGVAERAPYGRGEETLVDTEVRR 77          
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI001AED3E03 (2OG-Fe(II) oxygenase n=1 Tax=Thiothrix litoralis TaxID=2891210 RepID=UPI001AED3E03)

HSP 1 Score: 56.6 bits (135), Expect = 1.480e-6
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   64 DPRTEIKSLIRNVKTPGTF-AFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGRGRSTAP 306
            D  T++ S++  V+ PG+F A G + LA  P+L V+G+G I+LPL  + +  L   AE+AP+G G ET VD  V +    AP
Sbjct:    3 DLNTQLVSILNRVQRPGSFYATGKADLA-MPRLEVEGVGNIALPLLPQQISPLVQVAEQAPYGKGEETLVDTTVRKTWQIAP 83          
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI001D04B3FA (uncharacterized protein n=2 Tax=Bacidia gigantensis TaxID=2732470 RepID=UPI001D04B3FA)

HSP 1 Score: 56.6 bits (135), Expect = 1.500e-6
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   22 FDDGGSDDASSLQADPRTEIKSLIR----NVKTPGTFA-FGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECV 282
            F D  SD+ S  +  PR  +K  +R    NV + G+FA FG      +P +++  LG I LPLS ED  ++  A+ +APFG G +T VDE +
Sbjct:    4 FYDSSSDEKSDDERTPRDIVKDNLRYCINNVHSTGSFATFGVVERFANPGISIDPLGLIRLPLSEEDAKAIVRASNKAPFGKGNKTLVDESI 95          
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI00022C768F (hypothetical protein n=1 Tax=Thiorhodovibrio sp. 970 TaxID=631362 RepID=UPI00022C768F)

HSP 1 Score: 53.5 bits (127), Expect = 1.670e-6
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   76 EIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGR 288
            ++ +L+  +  PG F    +L    P+L V+G+G I+LPL       L G AE+AP+G G+ET VD  V R
Sbjct:    7 QLAALLERIDRPGDFYATGTLDMHPPRLRVEGIGTIALPLLPVQAQQLIGVAEQAPYGRGSETLVDTEVRR 77          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FJ33_ECTSI5.510e-4988.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ30_ECTSI6.170e-4180.21Catalase is an enzyme, present in all aerobic cell... [more]
D7FGP4_ECTSI9.360e-2390.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YA66_9CHLO1.000e-946.58Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
UPI00192C3A8B2.320e-738.272OG-Fe(II) oxygenase n=1 Tax=Thiothrix subterranea... [more]
UPI001B7FE1B83.150e-742.252OG-Fe(II) oxygenase n=1 Tax=Azohydromonas austral... [more]
UPI001BE8BF347.950e-740.852OG-Fe(II) oxygenase n=1 Tax=Variovorax paradoxus ... [more]
UPI001AED3E031.480e-641.462OG-Fe(II) oxygenase n=1 Tax=Thiothrix litoralis T... [more]
UPI001D04B3FA1.500e-639.13uncharacterized protein n=2 Tax=Bacidia gigantensi... [more]
UPI00022C768F1.670e-639.44hypothetical protein n=1 Tax=Thiorhodovibrio sp. 9... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12910contigE-siliculosus-1a_F_contig12910:288..718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size384
Model size431
Exons1
Ec32 orthologEc-07_004580.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelAgaricomycetes
EggNOG OGs22FM3@155619,2A31E@1,2RY49@2759,39KTN@33154,3Q56X@4751,3V24Y@5204
Seed eggNOG ortholog85982.XP_007321631.1
Seed ortholog evalue6.8e-07
Seed ortholog score60.5
Taxonomic scopeFungi
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927812.1715932-UTR-E-siliculosus-1a_F_contig12910:287..3341622927812.1715932-UTR-E-siliculosus-1a_F_contig12910:287..334Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12910 288..334 -
1696318690.4041283-UTR-E-siliculosus-1a_F_contig12910:287..3341696318690.4041283-UTR-E-siliculosus-1a_F_contig12910:287..334Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12910 288..334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927812.1826284-CDS-E-siliculosus-1a_F_contig12910:334..7181622927812.1826284-CDS-E-siliculosus-1a_F_contig12910:334..718Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12910 335..718 -
1696318690.4150844-CDS-E-siliculosus-1a_F_contig12910:334..7181696318690.4150844-CDS-E-siliculosus-1a_F_contig12910:334..718Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12910 335..718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12910.1779.1prot_E-siliculosus-1a_F_contig12910.1779.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12910 335..718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12910.1779.1

>prot_E-siliculosus-1a_F_contig12910.1779.1 ID=prot_E-siliculosus-1a_F_contig12910.1779.1|Name=mRNA_E-siliculosus-1a_F_contig12910.1779.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=128bp
MASSSHDFDDGGSDDASSLQADPRTEIKSLIRNVKTPGTFAFGSSLLAPS
PKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGRGRST
APSSGSRTSLLKPWGRSTPCTPRKSWG*
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mRNA from alignment at E-siliculosus-1a_F_contig12910:288..718-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12910.1779.1 ID=mRNA_E-siliculosus-1a_F_contig12910.1779.1|Name=mRNA_E-siliculosus-1a_F_contig12910.1779.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=431bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12910:288..718- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCATCTTCCTCGCACGATTTCGACGACGGCGGAAGTGACGATGCCTC GTCGTTGCAAGCCGACCCCCGCACGGAGATCAAGAGCCTCATCAGGAACG TCAAGACTCCTGGAACCTTCGCGTTCGGCTCGAGCCTGCTCGCTCCTTCT CCAAAGCTCACCGTGCAAGGTCTCGGGAGAATCTCCCTGCCCCTGAGCCG CGAAGACGTGGGCTCGCTGAGGGGTGCCGCCGAGCGTGCACCGTTCGGTC ATGGAGCAGAGACGACTGTGGACGAGTGCGTCGGGCGTGGCAGATCGACG GCTCCCTCCTCGGGCTCTCGAACGAGTTTGCTCAAGCCGTGGGGAAGAAG TACGCCTTGCACGCCGCGGAAAAGCTGGGGCTGAGGGCCAAGGCCTTGGG CGTGGAGGCCAGGCTGTACAAGCTCGTGATG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12910:288..718-

>mRNA_E-siliculosus-1a_F_contig12910.1779.1 ID=mRNA_E-siliculosus-1a_F_contig12910.1779.1|Name=mRNA_E-siliculosus-1a_F_contig12910.1779.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12910:288..718- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCATCTTCCTCGCACGATTTCGACGACGGCGGAAGTGACGATGCCTC
GTCGTTGCAAGCCGACCCCCGCACGGAGATCAAGAGCCTCATCAGGAACG
TCAAGACTCCTGGAACCTTCGCGTTCGGCTCGAGCCTGCTCGCTCCTTCT
CCAAAGCTCACCGTGCAAGGTCTCGGGAGAATCTCCCTGCCCCTGAGCCG
CGAAGACGTGGGCTCGCTGAGGGGTGCCGCCGAGCGTGCACCGTTCGGTC
ATGGAGCAGAGACGACTGTGGACGAGTGCGTCGGGCGTGGCAGATCGACG
GCTCCCTCCTCGGGCTCTCGAACGAGTTTGCTCAAGCCGTGGGGAAGAAG
TACGCCTTGCACGCCGCGGAAAAGCTGGGGCTGAATGGCATCTTCCTCGC
ACGATTTCGACGACGGCGGAAGTGACGATGCCTCGTCGTTGCAAGCCGAC
CCCCGCACGGAGATCAAGAGCCTCATCAGGAACGTCAAGACTCCTGGAAC
CTTCGCGTTCGGCTCGAGCCTGCTCGCTCCTTCTCCAAAGCTCACCGTGC
AAGGTCTCGGGAGAATCTCCCTGCCCCTGAGCCGCGAAGACGTGGGCTCG
CTGAGGGGTGCCGCCGAGCGTGCACCGTTCGGTCATGGAGCAGAGACGAC
TGTGGACGAGTGCGTCGGGCGTGGCAGATCGACGGCTCCCTCCTCGGGCT
CTCGAACGAGTTTGCTCAAGCCGTGGGGAAGAAGTACGCCTTGCACGCCG
CGGAAAAGCTGGGGCTGA
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