mRNA_E-siliculosus-1a_F_contig1291.1775.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1291.1775.1
Unique NamemRNA_E-siliculosus-1a_F_contig1291.1775.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1291.1775.1 vs. uniprot
Match: D7FR04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR04_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 1.310e-83
Identity = 141/159 (88.68%), Postives = 146/159 (91.82%), Query Frame = 1 
Query:   91 MRIRVPDSSSSSSGSELSDGGDSPVATTPEAFTDSDNDSSFESEYDEEAATTCGSNSGMLMEAVCSNSNSSRWPECTADMGNSHEGHHRPQQQQQQLEAPRPLRKVRFTLGGRESAKAAAPSCWGKEQRAVIQENALRSLGMLRSTESGALLAQQRRRW 567
            MRIRVPD+SSSS GSELSDGGDSPVATTPEAFTDSDNDSSF SEY+EEAA TCGSNSGMLMEA+C      RWPECTADMG+SHEGHHRPQQQQ+QLEAPRPLRKVRFTLGGRESAKAAAPSCWGKEQRAVIQENALRSLGMLR  ES A LAQQRRRW
Sbjct:    1 MRIRVPDTSSSS-GSELSDGGDSPVATTPEAFTDSDNDSSFGSEYEEEAAATCGSNSGMLMEAMC------RWPECTADMGSSHEGHHRPQQQQKQLEAPRPLRKVRFTLGGRESAKAAAPSCWGKEQRAVIQENALRSLGMLRPAESAAPLAQQRRRW 152
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1291.1775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR04_ECTSI1.310e-8388.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1291contigE-siliculosus-1a_F_contig1291:2076..5915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size696
Model size698
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1291.1775.1prot_E-siliculosus-1a_F_contig1291.1775.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1291 2076..5915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927811.844887-CDS-E-siliculosus-1a_F_contig1291:2075..23591622927811.844887-CDS-E-siliculosus-1a_F_contig1291:2075..2359Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1291 2076..2359 +
1696318690.101542-CDS-E-siliculosus-1a_F_contig1291:2075..23591696318690.101542-CDS-E-siliculosus-1a_F_contig1291:2075..2359Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1291 2076..2359 +
1622927811.8578124-CDS-E-siliculosus-1a_F_contig1291:2860..31601622927811.8578124-CDS-E-siliculosus-1a_F_contig1291:2860..3160Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1291 2861..3160 +
1696318690.1107755-CDS-E-siliculosus-1a_F_contig1291:2860..31601696318690.1107755-CDS-E-siliculosus-1a_F_contig1291:2860..3160Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1291 2861..3160 +
1622927811.8669915-CDS-E-siliculosus-1a_F_contig1291:5803..59151622927811.8669915-CDS-E-siliculosus-1a_F_contig1291:5803..5915Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1291 5804..5915 +
1696318690.1200442-CDS-E-siliculosus-1a_F_contig1291:5803..59151696318690.1200442-CDS-E-siliculosus-1a_F_contig1291:5803..5915Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1291 5804..5915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1291.1775.1

>prot_E-siliculosus-1a_F_contig1291.1775.1 ID=prot_E-siliculosus-1a_F_contig1291.1775.1|Name=mRNA_E-siliculosus-1a_F_contig1291.1775.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=232bp
MSSLRSSSSSSSTLCCAVLSTASQEPPLSPMRIRVPDSSSSSSGSELSDG
GDSPVATTPEAFTDSDNDSSFESEYDEEAATTCGSNSGMLMEAVCSNSNS
SRWPECTADMGNSHEGHHRPQQQQQQLEAPRPLRKVRFTLGGRESAKAAA
PSCWGKEQRAVIQENALRSLGMLRSTESGALLAQQRRRWQRKQKSSSSRS
SSGSAARAASKNRSLAPAPFKSTSANTSSTAV
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mRNA from alignment at E-siliculosus-1a_F_contig1291:2076..5915+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1291.1775.1 ID=mRNA_E-siliculosus-1a_F_contig1291.1775.1|Name=mRNA_E-siliculosus-1a_F_contig1291.1775.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1291:2076..5915+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCAGCCTTCGCAGCAGCAGCAGCAGCAGCAGCACCCTGTGCTGCGC
CGTGCTGTCGACAGCGAGCCAGGAGCCCCCCCTCTCCCCGATGAGGATTC
GGGTGCCGGACAGCAGCAGCAGCAGCAGCGGCAGCGAGCTCTCGGACGGC
GGCGACTCGCCGGTGGCGACGACTCCGGAGGCGTTCACCGACAGCGACAA
CGACTCGTCCTTCGAGAGCGAATACGACGAGGAGGCGGCGACCACTTGCG
GCAGCAACAGCGGGATGCTGATGGAGGCCGTATGGTGAGCTGTAGCTCGC
GTGGCAGGGGCAGCAGGCGGGCAGAGAGGAGGCATCCAGTCGACAGCAGT
TTGTCGGTGTTTTTTCTTGTTTTAGGAACACAGACCTAGCGCTCTTTCCT
GCTGTTGTTCGTTGTTGTTGGTGCCCGCGCCTTGCCGTGTCCGTTTCCGT
TTCGTTTTCACGACCCCAGGAGCGCGGGACATGGTTCTCGCGCTCAACAA
ACCGACACATGCTGATAGGCGCTGTTGGCGTTGGTTTGTGTTTGACATTG
CCTTGTGTTTTGCGCACACCGAGGGTCGATGTAGAGAGATGCCCCGGTGC
TTCGGGCGGTCTCTCTCTCGCCGAGGATGTCGTCGGCGGTTTGTTCTTGC
TGAGTCAAGAGCACACGTCATGGGAAGGGGCGGGGAACCGCATGCATGTC
CCTCTTCTCCGTTTTGAATTTTTTGCGCGCCTTGGGTCCAAACAACAGCA
ATATTTTCTCCCGTTTGCGCGCGTGTCCGACACAGCAGCAACAGCAACAG
CAGCAGATGGCCCGAGTGCACCGCCGATATGGGCAACAGCCATGAGGGGC
ACCACCGGCCACAACAACAACAGCAGCAGCTCGAGGCACCCCGGCCGCTC
AGGAAGGTGCGGTTCACCCTGGGCGGGAGGGAGTCAGCAAAGGCGGCAGC
ACCGAGTTGCTGGGGCAAGGAGCAGCGCGCCGTCATCCAGGAGAACGCTC
TCCGGAGTCTGGGAATGCTGCGCTCGACAGAGAGCGGAGCGCTGTTGGCA
CAGCAGCGGCGGCGGTGGCAGCGAAAACAAAAATCGTGAGTCTTGGTTGA
TCACAGCGCACCTATGTAGACCAATCTGTTCGCAAAAATCATGCGACAGC
AGCAGTCATATTTTTTTTTCAGAGCTCTTTTTTTGCAAAAAAATATCGGC
TTTGCCAAGCGCGCCGACCATCCCCCTCCCCTGCGGTTGCCTGCGGTTGC
CTGCGGTTGCCTCTTCTCTGTTGCGTTTATGTGTCTTGCGACTGTTGCTC
GCGTGCCTCGGTGTTAGTGATGCACCGTGGTGCCCACTCTCTTCCGTTGC
TTGTGTCTACGAGGACGACCAATAAAACGACTTAACCATCTCTTCACATT
GTCAACCGGGACAGCCGTGCTTATTATCCAGCAGCACTCGGCTTGGGGCC
ATCCAACAGTGTTACTGCTGCTGTATATTAGACTTCGTGTTGGCTGCGAG
TGTCGGTGCTGTTGGCGCATTTAATTTGTTCACGGTTTGTTAACGGTCAA
CTTTTGAATTTCAAAAACTTGGGCGATGGCGCGCTCATGACAAGGACGAA
GGGATTTCCGATCACCGAAATTGTTTCTTTTTTTTTTTTCCCCATGACAC
AAGGGATCCTTAATCCATCCACTCTATCCATATGGTATGCATAGCGGTTT
TTTTTTTTCTCTCCGCGTGCTTGGTTGTTGGCATGTATGGTTGGCACAGC
ACCCATACGTAGGATGCCTGCTGCAAACATACACTGCATTCTGTAACATT
GTTGGGCATTGTTGCGTGCAGCGGTCGAACGCTTCGGGTGCGAGACGCTG
TCGTTCCTCACAGGGGTTGCGTAGCTTATATTGTAGCTAGCGGTTGCATC
TGCTGCTGTTGTTGATGTAATTATGTATCCAACGACAACGTTTTTCGTGG
CAAGAAAAAAATGCGTAAAGTGTCTCCATACAACGGACAGATGAAGGTCC
GGGGTAGAGGGTAGAGAGATCGGAACGGTTTTTAATGTGAAGACAGCAAA
CAACCGACAACCACCACGGAGACAGCGTGGGAGTCACCCTTTTTGTATAT
GCACAGCAACCATTTGTGTGAGTACAGCTGACTGCTTGCTGTTGTTTCGC
CGGCGCGCGTCGTTCCCCCAACCAAACAGCAGTATGTATCGCTGTGACAA
GAGTTTGCACCAGTAGTAGCAGTTTTCCCCTGCGTGTGCGCTCTGCCAGA
GCACTATTATTTTTGTTTTTGCATGTTTTTTATGATGCATACATAGGATG
GCCGGTGTGTGCGGCGTCCGTTGTCCGGTGTATCCATATCATATGTAGTG
CAATGCGAGCAAGCATATTTTTCTCCCTCTAGTTCGAGGCGCGCTGCTTG
CTTGGGAGTAGTTTTCCTTTTTTTTTGTCTTCTTCCAAAATTATTTGTTT
TTGTTCCTCGAGGCTTCCGGTTGCCGTTGTTGGGTTGAGAACGGCATATA
TATTGAAGATAGATGTAGGACGTACTATCATTTGTGTCTGTCGCGTGCGG
CCACATTATTTGGTTGTTGTTTTTTCTGGGCGAAGAAGCCGGGGCGACAC
AGGGGGAACGAAGCGTGACGTCAAGTGATATTAGAAAATGTACGAAGACT
ACGTAGCACATACCCGTTCGAGATAATGCCACAGCGGTGGTGTTGTGTTG
AAGTCTTTGCAGTGGGTGGAAAAAAAACAACTTTTTCCGTACACGGGGAA
CACGAACATGAAAAAATAGTCCCGAAAATACAGCACGGACATATCCTTCC
ACACTTGATCATATACATACGATGGCCGTTATGTTCGATGTCTGCATTCA
CTTTCCTTTTTCCTAAAATGTAAAACGGATTGTAGCAGGAACAGTTTTTA
GGCAAAATACATTCACAGGAATAATTGTGTTCTAGTTAAGTGCACCCGTC
TTTGGCGTGCGTACATGTACTTTCGTGGTATTCAACATTCAAAATTCTCG
AGCCGTGCGAGCAGCTGGTTACAGCAGTAGAGAACACAAGCTGGCGTGTG
CGCTTGTGCGATCACACTTGCCCTGAATGAAGCTTCGAATGTTGAACTTT
TTCCCGTTCATGTCTTGGTCGCACGCGGAATCACTTGGCAGAGAAACAAC
GAAACACATCTCGTCCCATGGGTATGCCTGTCTCAAGGCGTAGGTTGCTT
CCGATGGTTTGGGCTTGGAAAGATGGAAGCCCACCCACCTGTGAAGAATT
CAACGTGTGCCATGTGCCATGGGTGAAATGTTGCCGTCGTTTTTGGCAGC
CAACAAGACACGTCGCTTTCGTTCTTCGTCTTGTCACCTGTCCTGTTTGG
CAGACCACGAAATGACACAGCAAGACATTGACATGGCAAAATCTCGTGTA
GCATGTCCATATGATCTGCATACGACCAACAACCAAACCTCGCTGGGTAC
CATGTCGCACATACATAGCTCTTAGCTCTGCCTATCGCTGCCGACTTGTA
GTGCAACGGCTGCGCTTGTTAGCTGGAAATGCAGCAGTTGTGTATAACCA
TTTACTCACACGGCGGAGCCTTAAAGGGAGCGACTGCATATTCAGTCCTC
CTTCGCGTTAACAACTGGTCCCCATTTTTATTGCGGTATACACTACTCGG
GAGTTGGGCTTCAGTTGTGGTCTGGCCTGCTCTAACGGTGCGTGCCTGCC
CCCCATCCCCCCCAATGATGCCCTGCAGAAGCAGCAGCAGAAGTAGCAGC
GGCAGCGCCGCCAGGGCGGCGTCCAAGAACCGGTCCTTGGCGCCGGCGCC
GTTCAAGAGCACCAGCGCCAACACCAGCAGCACAGCGGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1291:2076..5915+

>mRNA_E-siliculosus-1a_F_contig1291.1775.1 ID=mRNA_E-siliculosus-1a_F_contig1291.1775.1|Name=mRNA_E-siliculosus-1a_F_contig1291.1775.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1392bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1291:2076..5915+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCAGCCTTCGCAGCAGCAGCAGCAGCAGCAGCACCCTGTGCTGCGC
CGTGCTGTCGACAGCGAGCCAGGAGCCCCCCCTCTCCCCGATGAGGATTC
GGGTGCCGGACAGCAGCAGCAGCAGCAGCGGCAGCGAGCTCTCGGACGGC
GGCGACTCGCCGGTGGCGACGACTCCGGAGGCGTTCACCGACAGCGACAA
CGACTCGTCCTTCGAGAGCGAATACGACGAGGAGGCGGCGACCACTTGCG
GCAGCAACAGCGGGATGCTGATGGAGGCCGTATGATGAGCAGCCTTCGCA
GCAGCAGCAGCAGCAGCAGCACCCTGTGCTGCGCCGTGCTGTCGACAGCG
AGCCAGGAGCCCCCCCTCTCCCCGATGAGGATTCGGGTGCCGGACAGCAG
CAGCAGCAGCAGCGGCAGCGAGCTCTCGGACGGCGGCGACTCGCCGGTGG
CGACGACTCCGGAGGCGTTCACCGACAGCGACAACGACTCGTCCTTCGAG
AGCGAATACGACGAGGAGGCGGCGACCACTTGCGGCAGCAACAGCGGGAT
GCTGATGGAGGCCGTATGCAGCAACAGCAACAGCAGCAGATGGCCCGAGT
GCACCGCCGATATGGGCAACAGCCATGAGGGGCACCACCGGCCACAACAA
CAACAGCAGCAGCTCGAGGCACCCCGGCCGCTCAGGAAGGTGCGGTTCAC
CCTGGGCGGGAGGGAGTCAGCAAAGGCGGCAGCACCGAGTTGCTGGGGCA
AGGAGCAGCGCGCCGTCATCCAGGAGAACGCTCTCCGGAGTCTGGGAATG
CTGCGCTCGACAGAGAGCGGAGCGCTGTTGGCACAGCAGCGGCGGCGGTG
GCAGCGAAAACAAAAATCCAGCAACAGCAACAGCAGCAGATGGCCCGAGT
GCACCGCCGATATGGGCAACAGCCATGAGGGGCACCACCGGCCACAACAA
CAACAGCAGCAGCTCGAGGCACCCCGGCCGCTCAGGAAGGTGCGGTTCAC
CCTGGGCGGGAGGGAGTCAGCAAAGGCGGCAGCACCGAGTTGCTGGGGCA
AGGAGCAGCGCGCCGTCATCCAGGAGAACGCTCTCCGGAGTCTGGGAATG
CTGCGCTCGACAGAGAGCGGAGCGCTGTTGGCACAGCAGCGGCGGCGGTG
GCAGCGAAAACAAAAATCAAGCAGCAGCAGAAGTAGCAGCGGCAGCGCCG
CCAGGGCGGCGTCCAAGAACCGGTCCTTGGCGCCGGCGCCGTTCAAGAGC
ACCAGCGCCAACACCAGCAGCACAGCGGTGAAGCAGCAGCAGAAGTAGCA
GCGGCAGCGCCGCCAGGGCGGCGTCCAAGAACCGGTCCTTGGCGCCGGCG
CCGTTCAAGAGCACCAGCGCCAACACCAGCAGCACAGCGGTG
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