mRNA_E-siliculosus-1a_F_contig1019.177.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1019.177.1 vs. uniprot
Match: D8LIK0_ECTSI (2OG-FeII_Oxy_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIK0_ECTSI) HSP 1 Score: 702 bits (1812), Expect = 1.090e-250 Identity = 383/403 (95.04%), Postives = 386/403 (95.78%), Query Frame = 1 Query: 283 MASTALDFREMMRKERELAMKKLAATPSSPKAR--YMSKRRTRLDLKRNHRVSAERAERGIDGIFYVPGFVTEEEGRGLERAARSGDGXXXXXXXXXEWKDLYKRRLQIHGGTPHPSGMVEEELPTFLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEAFLDFWGSLEDAKADCADIAAGATSGCAVRAVPVSGLAARDAFTSSSEDNSVFTDGSASDDADGHAHQRRRAAKRALASVKCEDCSLVVFEGKAYHEAWHGIASTTGSGATMSATEAAPPARTEAEVATNGNISTIDGCVAAPQGTDEVAPSFSGTVKGGDRGGVGEAAQKRLSFTIRRVARVVPADSVMEHSEARSEMERRRRGFERSVTETGGDAGTST 1485
MASTALDFREMMRKERELAMKKLAATPSSPKAR YMSKRRTRLDLKRNHRVSAE AERGIDGIFYVPGFVTEEEGRGLE AARSGDGXXXXXXXXXEWKDLYKRRLQIHGGTPHPSGMVEEELP FLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEAFLDFWGSLEDAKADCADIAAGATSG A+ AVPVSGLAA DAFTSSSEDNSVFTD SA+DDADG AHQRRRAAKRAL SVKCE CSLVVFEGKAY EAWHGIAST GSGATMSATEAAPPARTEAEVAT+GNISTID CVAAPQG DEVAPSFSGTVKGGD GGVGEAAQKRLSFTIRRVARVVPADSVMEHSEARSEMERRRRGFERSVTETGGDAGTST
Sbjct: 1 MASTALDFREMMRKERELAMKKLAATPSSPKARHRYMSKRRTRLDLKRNHRVSAEGAERGIDGIFYVPGFVTEEEGRGLELAARSGDGXXXXXXXXXEWKDLYKRRLQIHGGTPHPSGMVEEELPAFLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEAFLDFWGSLEDAKADCADIAAGATSGRAICAVPVSGLAAGDAFTSSSEDNSVFTDESATDDADGRAHQRRRAAKRALVSVKCEHCSLVVFEGKAYREAWHGIASTAGSGATMSATEAAPPARTEAEVATSGNISTIDDCVAAPQGADEVAPSFSGTVKGGDLGGVGEAAQKRLSFTIRRVARVVPADSVMEHSEARSEMERRRRGFERSVTETGGDAGTST 403
BLAST of mRNA_E-siliculosus-1a_F_contig1019.177.1 vs. uniprot
Match: L1II63_GUITC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1II63_GUITC) HSP 1 Score: 149 bits (376), Expect = 1.200e-37 Identity = 88/225 (39.11%), Postives = 105/225 (46.67%), Query Frame = 1 Query: 454 GIDGIFYVPGFVTEEEGRGLERAARSGDGXXXXXXXXXEWKDLYKRRLQIHGGTPHPSGMVEEELPTFLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEAFLDFWGSLEDAKADCADIAAGATSGCAVRAVPVSGLAARDAFTSSSEDNSVFTDGSASDDADGHAHQRRRAAKRALASVKCEDCSLVVFEGKAYHEAWHGI 1128
G+ +FY+P F+TEEEG + R W +L +RRLQ HGGTPHP GM+ E+P F+ V DALV+AGVF E PNHVLLNEY+ GQGI PH+DGPLY VAILSL A L FW SL K C + A+ASV C SL+VF +AY WHGI
Sbjct: 10 GLASLFYIPNFLTEEEGAAILRRVSM--------MPESSWANLKRRRLQNHGGTPHPDGMIPSEVPQFIHAVMDALVQAGVFKEEERPNHVLLNEYARGQGIAPHQDGPLYMPLVAILSLDGPALLQFWPSLHATK--CGE---------------------------------------------------------AVASVLCLSNSLLVFNEEAYESHWHGI 167
BLAST of mRNA_E-siliculosus-1a_F_contig1019.177.1 vs. uniprot
Match: A0A7S4KT72_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KT72_GUITH) HSP 1 Score: 149 bits (376), Expect = 6.660e-37 Identity = 88/225 (39.11%), Postives = 105/225 (46.67%), Query Frame = 1 Query: 454 GIDGIFYVPGFVTEEEGRGLERAARSGDGXXXXXXXXXEWKDLYKRRLQIHGGTPHPSGMVEEELPTFLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEAFLDFWGSLEDAKADCADIAAGATSGCAVRAVPVSGLAARDAFTSSSEDNSVFTDGSASDDADGHAHQRRRAAKRALASVKCEDCSLVVFEGKAYHEAWHGI 1128
G+ +FY+P F+TEEEG + R W +L +RRLQ HGGTPHP GM+ E+P F+ V DALV+AGVF E PNHVLLNEY+ GQGI PH+DGPLY VAILSL A L FW SL K C + A+ASV C SL+VF +AY WHGI
Sbjct: 80 GLASLFYIPNFLTEEEGAAILRRVSM--------MPESSWANLKRRRLQNHGGTPHPDGMIPSEVPQFIHAVMDALVQAGVFKEEERPNHVLLNEYARGQGIAPHQDGPLYMPLVAILSLDGPALLQFWPSLHATK--CGE---------------------------------------------------------AVASVLCLSNSLLVFNEEAYESHWHGI 237
BLAST of mRNA_E-siliculosus-1a_F_contig1019.177.1 vs. uniprot
Match: A0A7S1ARC5_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ARC5_NOCSC) HSP 1 Score: 140 bits (352), Expect = 8.870e-34 Identity = 93/239 (38.91%), Postives = 109/239 (45.61%), Query Frame = 1 Query: 424 HRVSAERAERGIDGIFYVPGFVTEEEGRGL-ERAARSGDGXXXXXXXXXEWKDLYKRRLQIHGGTPHPSGMVEEELPTFLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEAFLDFWGSLEDAKADCADIAAGATSGCAVRAVPVSGLAARDAFTSSSEDNSVFTDGSASDDADGHAHQRRRAAKRALASVKCEDCSLVVFEGKAYHEAWHGIAST 1137
H V A+R + G+ YVP FVT+ E + L ER + W L +RRLQ HGGTPH GM+ E +P+F+Q V DA V+AG+F E PPNHVLLNEY GQGI PH+DGPLY+ VAILSL A L FW SLE K K A ASV C SL+VF AY WHGI T
Sbjct: 64 HVVCADR----LRGVHYVPDFVTDAEAQELLERLDTMPES---------SWVKLRRRRLQNHGGTPHSDGMIPERVPSFIQAVMDATVQAGIFEE--PPNHVLLNEYQRGQGIMPHQDGPLYQPVVAILSLAGPAMLQFWSSLEATK-----------------------------------------------------------RKDATASVLCHPNSLLVFREDAYQTHWHGIEET 228
BLAST of mRNA_E-siliculosus-1a_F_contig1019.177.1 vs. uniprot
Match: A0A7S1H8U6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H8U6_HEMAN) HSP 1 Score: 134 bits (337), Expect = 3.240e-33 Identity = 64/105 (60.95%), Postives = 75/105 (71.43%), Query Frame = 1 Query: 571 WKDLYKRRLQIHGGTPHPSGMVEEELPTFLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEAFLDFWGSLEDAKADCADIAA 885
W +L +RRLQ HGGTPHP GM E +P F+ + DA+VEAGVF +PPNHVLLNEY GQGI HKDGPLY VAILSLG A L+FW SL D + + A+ AA
Sbjct: 6 WTNLKRRRLQNHGGTPHPEGMQPESVPKFIGSLMDAMVEAGVFQRDAPPNHVLLNEYRCGQGIMAHKDGPLYMPWVAILSLGSPAMLEFWASLSDTREEGAEPAA 110
BLAST of mRNA_E-siliculosus-1a_F_contig1019.177.1 vs. uniprot
Match: A0A7S1GBR1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBR1_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.520e-29 Identity = 68/133 (51.13%), Postives = 76/133 (57.14%), Query Frame = 1 Query: 454 GIDGIFYVPGFVTEEEGRGLERAARSGDGXXXXXXXXXEWKDLYKRRLQIHGGTPHPSGMVEEELPTFLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEAFLDFWGSLE 852
G+ + Y P FVT EE G+ W L KRRLQ++GGTP GM + LP F+ ALVEAGVF +PPNHVLLNEY GQGI PHKDGPLY VAILSL LDFW SLE
Sbjct: 109 GLPSVAYYPDFVTPEE---------EGELLASTYLAAAPWHPLRKRRLQMYGGTPAAEGMRAQPLPPFMHACARALVEAGVFAADAPPNHVLLNEYEPGQGIMPHKDGPLYHPVVAILSLRSSCCLDFWPSLE 232
BLAST of mRNA_E-siliculosus-1a_F_contig1019.177.1 vs. uniprot
Match: R1G822_EMIHU (AlkB, alkylation repair 6 n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G822_EMIHU) HSP 1 Score: 118 bits (295), Expect = 7.620e-27 Identity = 64/126 (50.79%), Postives = 73/126 (57.94%), Query Frame = 1 Query: 454 GIDGIFYVPGFVTEEEGRGLERAARSGDGXXXXXXXXXEWKDLYKRRLQIHGGTPHPS--GMVEEELPTFLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEA 825
G+ GI ++ + + EE + R DG W L RRLQ GGTP S GM E LP+++Q VCD LV GVFP PPNHVLLNEY GQGI PHKDGPLY RVAILSL A
Sbjct: 69 GVRGIAHIAEWCSAEEEEAMLRCT---DGAPAH-----RWTQLRGRRLQSLGGTPSSSDGGMTREPLPSWVQSVCDELVRCGVFPHDQPPNHVLLNEYRPGQGIDPHKDGPLYAPRVAILSLSSRA 186
BLAST of mRNA_E-siliculosus-1a_F_contig1019.177.1 vs. uniprot
Match: A0A7S3W3M6_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W3M6_EMIHU) HSP 1 Score: 118 bits (295), Expect = 8.340e-26 Identity = 69/139 (49.64%), Postives = 79/139 (56.83%), Query Frame = 1 Query: 454 GIDGIFYVPGFVTEEEGRGLERAARSGDGXXXXXXXXXEWKDLYKRRLQIHGGTPHPS--GMVEEELPTFLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEAFLDFWGSLEDAKA 864
G+ GI ++ + + EE + R DG W L RRLQ GGTP S GM E LP+++Q VCD LV GVFP PPNHVLLNEY GQGI PHKDGPLY RVAILSL A F LED+ A
Sbjct: 69 GVRGIAHIAEWCSAEEEEAMLRCT---DGAPAH-----RWTRLRGRRLQSLGGTPSSSDGGMTREPLPSWVQSVCDELVRCGVFPHDQPPNHVLLNEYRPGQGIDPHKDGPLYAPRVAILSLSSRASFLF---LEDSVA 196
BLAST of mRNA_E-siliculosus-1a_F_contig1019.177.1 vs. uniprot
Match: UPI00193930AF (alpha-ketoglutarate-dependent dioxygenase alkB homolog 6-like isoform X1 n=2 Tax=Styela clava TaxID=7725 RepID=UPI00193930AF) HSP 1 Score: 114 bits (284), Expect = 4.360e-25 Identity = 57/127 (44.88%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 460 DGIFYVPGFVTEEEGRGLERAARSGDGXXXXXXXXXEWKDLYKRRLQIHGGTPHPSGMVEEELPTFLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEAFLDFW 840
D FY+P F+T++E L +W L RRLQ GG PHP GMV+E LP +L + CD + GVF ++ P NHVL+NEY GQGI PH+DGPLY V +SLG LDF+
Sbjct: 11 DVAFYMPNFITDKEEEYLVNEVYKSP--------KPKWTVLSNRRLQNWGGIPHPKGMVQENLPKWLNDCCDKVSNLGVFADNKP-NHVLVNEYKPGQGIMPHQDGPLYYPTVTTISLGSHTILDFY 128
BLAST of mRNA_E-siliculosus-1a_F_contig1019.177.1 vs. uniprot
Match: V4AYV7_LOTGI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AYV7_LOTGI) HSP 1 Score: 113 bits (282), Expect = 7.580e-25 Identity = 58/136 (42.65%), Postives = 77/136 (56.62%), Query Frame = 1 Query: 460 DGIFYVPGFVTEEEGRGLERAARSGDGXXXXXXXXXEWKDLYKRRLQIHGGTPHPSGMVEEELPTFLQEVCDALVEAGVFPESSPPNHVLLNEYSDGQGIGPHKDGPLYEGRVAILSLGKEAFLDFWGSLEDAKAD 867
D I Y+P F+++EE + L S +W L RRLQ GG PHP GMV E++P +L CD + + +F E PNHVL+NEYS GQGI PH+DGPL+ V +SLG LDF+ + KA+
Sbjct: 4 DTIIYIPNFISQEEEQKLIDHVYSAP--------KPKWTHLSNRRLQNWGGLPHPKGMVAEDIPQWLDLYCDKIGKLDLF-EGKKPNHVLVNEYSPGQGIMPHEDGPLFYPTVTTISLGSSTVLDFYTHINQGKAE 130 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1019.177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1019.177.1 >prot_E-siliculosus-1a_F_contig1019.177.1 ID=prot_E-siliculosus-1a_F_contig1019.177.1|Name=mRNA_E-siliculosus-1a_F_contig1019.177.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=475bp MRTALLAFLARLCLSFASAPFALASKRGKGHSAAAGGLSPGGRSSSTSAAback to top mRNA from alignment at E-siliculosus-1a_F_contig1019:8385..11331- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1019.177.1 ID=mRNA_E-siliculosus-1a_F_contig1019.177.1|Name=mRNA_E-siliculosus-1a_F_contig1019.177.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2947bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1019:8385..11331- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1019:8385..11331- >mRNA_E-siliculosus-1a_F_contig1019.177.1 ID=mRNA_E-siliculosus-1a_F_contig1019.177.1|Name=mRNA_E-siliculosus-1a_F_contig1019.177.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2850bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1019:8385..11331- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |