prot_E-siliculosus-1a_F_contig1287.1754.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1287.1754.1
Unique Nameprot_E-siliculosus-1a_F_contig1287.1754.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length108
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A835ZMS4_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMS4_9STRA)

HSP 1 Score: 174 bits (442), Expect = 9.910e-55
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 0 
Query:   10 DEEREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 106
            D+EREEEFA+GPLSLLMQSVKNN QVLINVRNNHKLLAR+KAFDRHCNMVLTDVKEMWT+ PK GKGQKKA  VNKDRYVSKMFLRGDSV+LVL+NP
Sbjct:   11 DKEREEEFASGPLSLLMQSVKNNNQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEMWTDVPKKGKGQKKAHPVNKDRYVSKMFLRGDSVILVLKNP 107
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BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A7S2XVF6_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVF6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.500e-52
Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 0 
Query:    9 PDEEREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 106
            P+ E ++EF TGPLS+LMQSVK NTQVLINVRNNHKLLAR+KAFDRHCNMVL +VKEMWTE PKTGKG+KKAK VNKDRY+SKMFLRGDSV+LVL+NP
Sbjct:   10 PEGENKDEFNTGPLSILMQSVKQNTQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNP 107
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BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A7S2GCZ6_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCZ6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.240e-52
Identity = 79/100 (79.00%), Postives = 94/100 (94.00%), Query Frame = 0 
Query:    8 GPDEEREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNPT 107
            GP+ ++E+EFATGPLS+LM SVKNNTQVLINVRNNHKLLAR+KAFDRHCNMVL +VKEMWT+ PK+GKG KK+K VNK+RY+SKMFLRGDSV+LVL+NP+
Sbjct:   12 GPEGDKEQEFATGPLSVLMHSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTDVPKSGKGAKKSKPVNKERYISKMFLRGDSVILVLKNPS 111
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BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: D7FW42_ECTSI (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW42_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 4.120e-51
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 
Query:   26 MQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNPT 107
            MQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNPT
Sbjct:    1 MQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNPT 82
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BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A6A4WKZ7_AMPAM (Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Bilateria TaxID=33213 RepID=A0A6A4WKZ7_AMPAM)

HSP 1 Score: 162 bits (409), Expect = 1.500e-49
Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 0 
Query:   14 EEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 106
            EEEF TGPLS+L QSVKNNTQVLIN RNN KLLAR+KAFDRHCNMVL +VKEMWTE PKTGKG+KKAK VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct:   20 EEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTELPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLRNP 112
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BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: C1BS97_LEPSM (Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Protostomia TaxID=33317 RepID=C1BS97_LEPSM)

HSP 1 Score: 161 bits (407), Expect = 2.670e-49
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 0 
Query:   10 DEEREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 106
            ++  EEEF TGPLS+L QSVKNNTQVLIN RNN KLL R+KAFDRHCNMVL  VKEMWTE PKTGKG+KKAK VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct:   16 EKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLRNP 112
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BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A2T7P031_POMCA (Small nuclear ribonucleoprotein Sm D2 n=12 Tax=Mollusca TaxID=6447 RepID=A0A2T7P031_POMCA)

HSP 1 Score: 159 bits (403), Expect = 1.090e-48
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 0 
Query:   14 EEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 106
            +EEF TGPLS+L QSVKNNTQVLIN RNN KLLAR+KAFDRHCNMVL +VKEMWTE PKTGKG+KK+K VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct:   18 QEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMFLRGDSVILVLRNP 110
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BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: E0W320_PEDHC (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0W320_PEDHC)

HSP 1 Score: 159 bits (402), Expect = 1.320e-48
Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = 0 
Query:    9 PDE---EREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 106
            PDE     EEEF+TGPLS+L QSVKNNTQVLIN RNN KLL R+KAFDRHCNMVL +VKEMWTE P++GKG+KKAK+VNKDR++SKMFLRGDSV+LVLRNP
Sbjct:    3 PDELSKREEEEFSTGPLSVLSQSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTELPRSGKGKKKAKSVNKDRFISKMFLRGDSVILVLRNP 103
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BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A7S3HBV9_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBV9_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.360e-48
Identity = 79/98 (80.61%), Postives = 89/98 (90.82%), Query Frame = 0 
Query:   11 EEREE--EFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 106
            EE++E  EF TGPLS+LMQSVK N+QVLIN RNNHKLLAR+KAFDRHCN+VL +VKEMWTE PKTGKG KKA+ VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct:   13 EEKDEQAEFETGPLSVLMQSVKQNSQVLINCRNNHKLLARVKAFDRHCNLVLENVKEMWTETPKTGKGAKKARPVNKDRYISKMFLRGDSVILVLRNP 110
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: F0XYE5_AURAN (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYE5_AURAN)

HSP 1 Score: 159 bits (401), Expect = 1.560e-48
Identity = 76/93 (81.72%), Postives = 88/93 (94.62%), Query Frame = 0 
Query:   14 EEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 106
            E EFATGPLSLL+ S+K+N+QVLINVRNNHKLLAR+KAFDRHCNMVL +VKE+WTE PKTGKG+KK+K VNK+RY+SKMFLRGDSV+LVLRNP
Sbjct:    9 ENEFATGPLSLLLHSMKSNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEVWTEIPKTGKGKKKSKPVNKERYISKMFLRGDSVILVLRNP 101
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZMS4_9STRA9.910e-5588.66Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Trib... [more]
A0A7S2XVF6_9STRA5.500e-5282.65Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibr... [more]
A0A7S2GCZ6_9STRA6.240e-5279.00Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Flor... [more]
D7FW42_ECTSI4.120e-51100.00Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ecto... [more]
A0A6A4WKZ7_AMPAM1.500e-4986.02Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Bila... [more]
C1BS97_LEPSM2.670e-4981.44Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Prot... [more]
A0A2T7P031_POMCA1.090e-4883.87Small nuclear ribonucleoprotein Sm D2 n=12 Tax=Mol... [more]
E0W320_PEDHC1.320e-4878.22Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Pedi... [more]
A0A7S3HBV9_9STRA1.360e-4880.61Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Spum... [more]
F0XYE5_AURAN1.560e-4881.72Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Aure... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 25..104
e-value: 1.3E-17
score: 74.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 30..102
e-value: 3.8E-18
score: 64.9
NoneNo IPR availableGENE3D2.30.30.100coord: 15..107
e-value: 2.8E-39
score: 134.7
NoneNo IPR availablePANTHERPTHR12777:SF1coord: 12..106
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 12..106
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 20..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1287contigE-siliculosus-1a_F_contig1287:29750..31248 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1287.1754.1mRNA_E-siliculosus-1a_F_contig1287.1754.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1287 29750..31248 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1287.1754.1 ID=prot_E-siliculosus-1a_F_contig1287.1754.1|Name=mRNA_E-siliculosus-1a_F_contig1287.1754.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=108bp
SGEERIKGPDEEREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIK
AFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVV
LVLRNPT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR027248Sm_D2
IPR001163LSM_dom_euk/arc