mRNA_E-siliculosus-1a_F_contig1287.1754.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A835ZMS4_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMS4_9STRA) HSP 1 Score: 174 bits (442), Expect = 9.910e-55 Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 1
Query: 28 DEEREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 318
D+EREEEFA+GPLSLLMQSVKNN QVLINVRNNHKLLAR+KAFDRHCNMVLTDVKEMWT+ PK GKGQKKA VNKDRYVSKMFLRGDSV+LVL+NP
Sbjct: 11 DKEREEEFASGPLSLLMQSVKNNNQVLINVRNNHKLLARVKAFDRHCNMVLTDVKEMWTDVPKKGKGQKKAHPVNKDRYVSKMFLRGDSVILVLKNP 107
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A7S2XVF6_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVF6_9STRA) HSP 1 Score: 167 bits (424), Expect = 5.500e-52 Identity = 81/98 (82.65%), Postives = 91/98 (92.86%), Query Frame = 1
Query: 25 PDEEREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 318
P+ E ++EF TGPLS+LMQSVK NTQVLINVRNNHKLLAR+KAFDRHCNMVL +VKEMWTE PKTGKG+KKAK VNKDRY+SKMFLRGDSV+LVL+NP
Sbjct: 10 PEGENKDEFNTGPLSILMQSVKQNTQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNP 107
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A7S2GCZ6_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCZ6_9STRA) HSP 1 Score: 167 bits (424), Expect = 6.240e-52 Identity = 79/100 (79.00%), Postives = 94/100 (94.00%), Query Frame = 1
Query: 22 GPDEEREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNPT 321
GP+ ++E+EFATGPLS+LM SVKNNTQVLINVRNNHKLLAR+KAFDRHCNMVL +VKEMWT+ PK+GKG KK+K VNK+RY+SKMFLRGDSV+LVL+NP+
Sbjct: 12 GPEGDKEQEFATGPLSVLMHSVKNNTQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTDVPKSGKGAKKSKPVNKERYISKMFLRGDSVILVLKNPS 111
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: D7FW42_ECTSI (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW42_ECTSI) HSP 1 Score: 164 bits (416), Expect = 4.120e-51 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1
Query: 76 MQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNPT 321
MQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNPT
Sbjct: 1 MQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNPT 82
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A6A4WKZ7_AMPAM (Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Bilateria TaxID=33213 RepID=A0A6A4WKZ7_AMPAM) HSP 1 Score: 162 bits (409), Expect = 1.500e-49 Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 1
Query: 40 EEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 318
EEEF TGPLS+L QSVKNNTQVLIN RNN KLLAR+KAFDRHCNMVL +VKEMWTE PKTGKG+KKAK VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct: 20 EEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTELPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLRNP 112
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: C1BS97_LEPSM (Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Protostomia TaxID=33317 RepID=C1BS97_LEPSM) HSP 1 Score: 161 bits (407), Expect = 2.670e-49 Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 1
Query: 28 DEEREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 318
++ EEEF TGPLS+L QSVKNNTQVLIN RNN KLL R+KAFDRHCNMVL VKEMWTE PKTGKG+KKAK VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct: 16 EKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLRNP 112
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A2T7P031_POMCA (Small nuclear ribonucleoprotein Sm D2 n=12 Tax=Mollusca TaxID=6447 RepID=A0A2T7P031_POMCA) HSP 1 Score: 159 bits (403), Expect = 1.090e-48 Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 1
Query: 40 EEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 318
+EEF TGPLS+L QSVKNNTQVLIN RNN KLLAR+KAFDRHCNMVL +VKEMWTE PKTGKG+KK+K VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct: 18 QEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMFLRGDSVILVLRNP 110
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: E0W320_PEDHC (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0W320_PEDHC) HSP 1 Score: 159 bits (402), Expect = 1.320e-48 Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = 1
Query: 25 PDE---EREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 318
PDE EEEF+TGPLS+L QSVKNNTQVLIN RNN KLL R+KAFDRHCNMVL +VKEMWTE P++GKG+KKAK+VNKDR++SKMFLRGDSV+LVLRNP
Sbjct: 3 PDELSKREEEEFSTGPLSVLSQSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTELPRSGKGKKKAKSVNKDRFISKMFLRGDSVILVLRNP 103
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: A0A7S3HBV9_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBV9_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.360e-48 Identity = 79/98 (80.61%), Postives = 89/98 (90.82%), Query Frame = 1
Query: 31 EEREE--EFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 318
EE++E EF TGPLS+LMQSVK N+QVLIN RNNHKLLAR+KAFDRHCN+VL +VKEMWTE PKTGKG KKA+ VNKDRY+SKMFLRGDSV+LVLRNP
Sbjct: 13 EEKDEQAEFETGPLSVLMQSVKQNSQVLINCRNNHKLLARVKAFDRHCNLVLENVKEMWTETPKTGKGAKKARPVNKDRYISKMFLRGDSVILVLRNP 110
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Match: F0XYE5_AURAN (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYE5_AURAN) HSP 1 Score: 159 bits (401), Expect = 1.560e-48 Identity = 76/93 (81.72%), Postives = 88/93 (94.62%), Query Frame = 1
Query: 40 EEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLRGDSVVLVLRNP 318
E EFATGPLSLL+ S+K+N+QVLINVRNNHKLLAR+KAFDRHCNMVL +VKE+WTE PKTGKG+KK+K VNK+RY+SKMFLRGDSV+LVLRNP
Sbjct: 9 ENEFATGPLSLLLHSMKSNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEVWTEIPKTGKGKKKSKPVNKERYISKMFLRGDSVILVLRNP 101 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1287.1754.1 >prot_E-siliculosus-1a_F_contig1287.1754.1 ID=prot_E-siliculosus-1a_F_contig1287.1754.1|Name=mRNA_E-siliculosus-1a_F_contig1287.1754.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=108bp SGEERIKGPDEEREEEFATGPLSLLMQSVKNNTQVLINVRNNHKLLARIKback to top mRNA from alignment at E-siliculosus-1a_F_contig1287:29750..31248+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1287.1754.1 ID=mRNA_E-siliculosus-1a_F_contig1287.1754.1|Name=mRNA_E-siliculosus-1a_F_contig1287.1754.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1499bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1287:29750..31248+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1287:29750..31248+ >mRNA_E-siliculosus-1a_F_contig1287.1754.1 ID=mRNA_E-siliculosus-1a_F_contig1287.1754.1|Name=mRNA_E-siliculosus-1a_F_contig1287.1754.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1287:29750..31248+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |