mRNA_E-siliculosus-1a_F_contig10184.174.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10184.174.1
Unique NamemRNA_E-siliculosus-1a_F_contig10184.174.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10184.174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10184contigE-siliculosus-1a_F_contig10184:1392..1703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size312
Model size314
Exons1
Ec32 orthologEc-01_008770.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.9485006-CDS-E-siliculosus-1a_F_contig10184:1391..17031622927519.9485006-CDS-E-siliculosus-1a_F_contig10184:1391..1703Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10184 1392..1703 -
1696318565.4849157-CDS-E-siliculosus-1a_F_contig10184:1391..17031696318565.4849157-CDS-E-siliculosus-1a_F_contig10184:1391..1703Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10184 1392..1703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10184.174.1prot_E-siliculosus-1a_F_contig10184.174.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10184 1392..1703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10184.174.1

>prot_E-siliculosus-1a_F_contig10184.174.1 ID=prot_E-siliculosus-1a_F_contig10184.174.1|Name=mRNA_E-siliculosus-1a_F_contig10184.174.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=104bp
GGDFFRFDWGGVVPRARFVRLYLSRVCRLQCCVIWMVLFLNFVLRGCQSL
SLSLSLSLSLGVCVWCVGSPSLPCFVLPFLSRLATLFPGCSQRRRRRDFD
GLVW
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mRNA from alignment at E-siliculosus-1a_F_contig10184:1392..1703-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10184.174.1 ID=mRNA_E-siliculosus-1a_F_contig10184.174.1|Name=mRNA_E-siliculosus-1a_F_contig10184.174.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=312bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10184:1392..1703- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGGAGACTTTTTTCGATTTGATTGGGGTGGTGTGGTCCCACGTGCTCG
CTTTGTCCGGTTGTACCTATCGAGAGTTTGTCGATTGCAGTGCTGTGTCA
TATGGATGGTATTATTTTTAAATTTTGTTTTGCGGGGCTGTCAGTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCCCTCGGCGTGTGTGTGTGGTGTGT
CGGCAGCCCTTCCCTACCGTGTTTTGTCCTTCCCTTCCTTTCGCGACTGG
CTACCTTATTTCCGGGCTGTTCGCAGCGCCGCCGCCGTCGCGATTTTGAT
GGTCTTGTGTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10184:1392..1703-

>mRNA_E-siliculosus-1a_F_contig10184.174.1 ID=mRNA_E-siliculosus-1a_F_contig10184.174.1|Name=mRNA_E-siliculosus-1a_F_contig10184.174.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10184:1392..1703- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGGAGACTTTTTTCGATTTGATTGGGGTGGTGTGGTCCCACGTGCTCG
CTTTGTCCGGTTGTACCTATCGAGAGTTTGTCGATTGCAGTGCTGTGTCA
TATGGATGGTATTATTTTTAAATTTTGTTTTGCGGGGCTGTCAGTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCCCTCGGCGTGTGTGTGTGGTGTGT
CGGCAGCCCTTCCCTACCGTGTTTTGTCCTTCCCTTCCTTTCGCGACTGG
CTACCTTATTTCCGGGCTGTTCGCAGCGCCGCCGCCGTCGCGATTTTGAT
GGTCTTGTGTGGGGCGGAGACTTTTTTCGATTTGATTGGGGTGGTGTGGT
CCCACGTGCTCGCTTTGTCCGGTTGTACCTATCGAGAGTTTGTCGATTGC
AGTGCTGTGTCATATGGATGGTATTATTTTTAAATTTTGTTTTGCGGGGC
TGTCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCGGCGTGTG
TGTGTGGTGTGTCGGCAGCCCTTCCCTACCGTGTTTTGTCCTTCCCTTCC
TTTCGCGACTGGCTACCTTATTTCCGGGCTGTTCGCAGCGCCGCCGCCGT
CGCGATTTTGATGGTCTTGTGTGG
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