mRNA_E-siliculosus-1a_F_contig128.1709.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig128.1709.1
Unique NamemRNA_E-siliculosus-1a_F_contig128.1709.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1709.1 vs. uniprot
Match: D8LTS8_ECTSI (FoP_duplication domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS8_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 3.240e-28
Identity = 77/98 (78.57%), Postives = 78/98 (79.59%), Query Frame = 2 
Query:   44 ERMKEFTVEELDQQMDNYFQRD-DKEGGDADSGXXXXXXXXXGPPATAEKLDSAMDSYWGNGKAAEAAPEGDEKENNDVAAMEGQDEEAPAADSAGGN 334
            ER KEFTVEELDQQMDNYFQRD DKEGGDADS XXXXXXXXX                WGNGKAAEAAPEGDEK N+DVAAMEGQDEEAPAADSAGGN
Sbjct:  150 ERKKEFTVEELDQQMDNYFQRDEDKEGGDADSXXXXXXXXXXXXXXXXXXXXXXXXXXWGNGKAAEAAPEGDEKGNDDVAAMEGQDEEAPAADSAGGN 247
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1709.1 vs. uniprot
Match: A0A6H5KIZ9_9PHAE (FoP_duplication domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIZ9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 5.210e-27
Identity = 75/98 (76.53%), Postives = 76/98 (77.55%), Query Frame = 2 
Query:   41 RERMKEFTVEELDQQMDNYFQRDDKEGGDADSGXXXXXXXXXGPPATAEKLDSAMDSYWGNGKAAEAAPEGDEKENNDVAAMEGQDEEAPAADSAGGN 334
            RERMKEFTVEELDQQMDNYFQRDDKEG      XXXXXXXXX                WGNGKAAEAAPEG+EKENNDVAAMEGQDEEAPAADSAGGN
Sbjct:  124 RERMKEFTVEELDQQMDNYFQRDDKEG--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGNGKAAEAAPEGNEKENNDVAAMEGQDEEAPAADSAGGN 219
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig128.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTS8_ECTSI3.240e-2878.57FoP_duplication domain-containing protein n=1 Tax=... [more]
A0A6H5KIZ9_9PHAE5.210e-2776.53FoP_duplication domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig128contigE-siliculosus-1a_F_contig128:27396..29185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size288
Model size454
Exons3
Ec32 orthologEc-28_002950.1
Ec32 ortholog descriptionFriend of PRMT1 duplication
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig128.1709.1prot_E-siliculosus-1a_F_contig128.1709.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig128 27513..29136 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.920701-UTR-E-siliculosus-1a_F_contig128:27395..275121622927799.920701-UTR-E-siliculosus-1a_F_contig128:27395..27512Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 27396..27512 -
1696318684.9323084-UTR-E-siliculosus-1a_F_contig128:27395..275121696318684.9323084-UTR-E-siliculosus-1a_F_contig128:27395..27512Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 27396..27512 -
1622927799.9999506-UTR-E-siliculosus-1a_F_contig128:29136..291851622927799.9999506-UTR-E-siliculosus-1a_F_contig128:29136..29185Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 29137..29185 -
1696318684.9789944-UTR-E-siliculosus-1a_F_contig128:29136..291851696318684.9789944-UTR-E-siliculosus-1a_F_contig128:29136..29185Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 29137..29185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.9399745-CDS-E-siliculosus-1a_F_contig128:27512..275901622927799.9399745-CDS-E-siliculosus-1a_F_contig128:27512..27590Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 27513..27590 -
1696318684.9400349-CDS-E-siliculosus-1a_F_contig128:27512..275901696318684.9400349-CDS-E-siliculosus-1a_F_contig128:27512..27590Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 27513..27590 -
1622927799.9645903-CDS-E-siliculosus-1a_F_contig128:28240..283901622927799.9645903-CDS-E-siliculosus-1a_F_contig128:28240..28390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 28241..28390 -
1696318684.9477613-CDS-E-siliculosus-1a_F_contig128:28240..283901696318684.9477613-CDS-E-siliculosus-1a_F_contig128:28240..28390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 28241..28390 -
1622927799.983189-CDS-E-siliculosus-1a_F_contig128:29076..291361622927799.983189-CDS-E-siliculosus-1a_F_contig128:29076..29136Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 29077..29136 -
1696318684.9643638-CDS-E-siliculosus-1a_F_contig128:29076..291361696318684.9643638-CDS-E-siliculosus-1a_F_contig128:29076..29136Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 29077..29136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig128.1709.1

>prot_E-siliculosus-1a_F_contig128.1709.1 ID=prot_E-siliculosus-1a_F_contig128.1709.1|Name=mRNA_E-siliculosus-1a_F_contig128.1709.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp
MKEFTVEELDQQMDNYFQRDDKEGGDADSGGKGRGRKGRGPPATAEKLDS
AMDSYWGNGKAAEAAPEGDEKENNDVAAMEGQDEEAPAADSAGGN*
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mRNA from alignment at E-siliculosus-1a_F_contig128:27396..29185-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig128.1709.1 ID=mRNA_E-siliculosus-1a_F_contig128.1709.1|Name=mRNA_E-siliculosus-1a_F_contig128.1709.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1790bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:27396..29185- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGCGTGGCGGCGGTGGGGGTGGAGGTGGCGGAAACGGTAGGGAGAGGA
TGAAGGAGTTTACGGTGGAGGAACTCGACCAACAGATGGACAACTACTTC
CAGCGCGATGTGAGCCGACAGTATCCTCTTGCTGCCGTCACTTGCGACGG
GAAACGTAGCCCCCGAGCGAACGCAGCAAGTACGCGATCGAGAAATATAC
CCTCGGGAAGGACGGGGGAGCCCCCCTCCCCCCCCCCACATGGGTTGCGT
TTGTACCACACTGGGGTTTAGTTGCAGACGGAAGTAGGGCTGTCGTTCAT
CTCGTTCTGGGTCTGGAGCAGGGAAATCATTTGTTGTTACGGGAGTAGGA
GCGCGGTCGCGCCTGTCTTGTTCCGGCAGCAACGGATTGGGTAGCGCGGT
TTGGTCTCCACCAATCGTCTCGACCAACCGTAGATTTTTGTTTTTTTGTT
TGGGACAAGCTCCTCGGGGAGAAATTTCCGTCAAGTTTCCTCCATGAAGG
TCGTTGTCTCCCTGAATTTATCTTTGGCGCCCGTTGTCGTGGAAGAAAAC
CATTCTTCTGAGCGGTGACCGGGGGGGGAGAGATCGATCGCTGCCGGGGC
TCTAAAACGAGCAGCTTTAGCATTGCATTGTGCCTGTTGAACAAGCACGC
CGGCAATGTACTTGTGTAGAAACAACGAATGTCGCCTTCATGCCAAGTCT
CCTTCGAAGGATGTACAGTGGGTTCGTCGGTGGTGTCTTTGTCATCGATG
CCCACGCCGCCGCCACCCCTACGCTGCTGTCGTCGTCTCGGGCAGGATAA
GGAGGGGGGCGACGCAGACAGCGGCGGCAAGGGACGGGGTCGCAAAGGAA
GAGGCCCCCCCGCTACCGCTGAAAAGCTAGACTCTGCCATGGACAGCTAC
TGGGGGAATGGAAAGGCCGCCGAGGCTGCCCCCGAGGGGGACGAGGTGTG
TTTTTGCTGTAGAAATACAGCAGGTTTGCGTATGATACCACACCCCCTGT
ATCAGGTGAACATGTTGGATAAAGCATGCAATCGGGGAAGTTGGGTTAGG
GTGAGGCAAATAGGGTCTGCGTACCCCCTCCCTGTTTTCTATTTCCTCAT
AAACTTGGATGTCTCGCGAAGGCGGCCCACCGATTTTCACCCCCTTTACA
TCGATTTTGAAAGCTCGATTACTGCACGACGTCTAAGATGCTCAAAAATG
AAAAAGTATTCTTCCAAGTTTTTCTAGAAGATCGTGGTGGGGTGCGCAGG
AGAGCCCGCAACATGGTCGACACTACAAATGCGGCCTCGTACAGCGGTGG
AAGCAACACACACTACCGCCTGTTATTGTACGCAACGTCATGTAGTGAGG
CCATGACATGTAATAAGGGTGTAGCTTCTCGTTGTAGCTAGGTTGGAGCA
CGTGGGTTCCTGCATCGCATTCCACTAGGCCTATCCCTACACCCGCACGC
CATGACCGTCGTGTCTACGAAACATGCCGTCCAACATCGAGCTGATGTCA
AGAATGACAGATAGGTGGTGGCGTGAAAGCTAAGCGCGATCCGAACTGCT
GTTGTGCATTGGGTTTGTGCTTGCATGTCTTGCCGTTTCGTCCAGAAGGA
GAACAACGACGTGGCTGCGATGGAAGGGCAGGACGAAGAGGCGCCTGCTG
CAGACTCGGCAGGCGGAAACTAAGGGTGGCAAGAGGCGCCAGCTAAAGAG
TCGAGGACTGCAAGGACTGCAGCAGGGAGCTGGGGTATATAGCAGGGGGT
TGAGGAGAGTCAAGGAGCTCTTCTGGTGCCAAATCGGTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig128:27396..29185-

>mRNA_E-siliculosus-1a_F_contig128.1709.1 ID=mRNA_E-siliculosus-1a_F_contig128.1709.1|Name=mRNA_E-siliculosus-1a_F_contig128.1709.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:27396..29185- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGGAGTTTACGGTGGAGGAACTCGACCAACAGATGGACAACTACTT
CCAGCGCGATATGAAGGAGTTTACGGTGGAGGAACTCGACCAACAGATGG
ACAACTACTTCCAGCGCGATGATAAGGAGGGGGGCGACGCAGACAGCGGC
GGCAAGGGACGGGGTCGCAAAGGAAGAGGCCCCCCCGCTACCGCTGAAAA
GCTAGACTCTGCCATGGACAGCTACTGGGGGAATGGAAAGGCCGCCGAGG
CTGCCCCCGAGGGGGACGAGGATAAGGAGGGGGGCGACGCAGACAGCGGC
GGCAAGGGACGGGGTCGCAAAGGAAGAGGCCCCCCCGCTACCGCTGAAAA
GCTAGACTCTGCCATGGACAGCTACTGGGGGAATGGAAAGGCCGCCGAGG
CTGCCCCCGAGGGGGACGAGAAGGAGAACAACGACGTGGCTGCGATGGAA
GGGCAGGACGAAGAGGCGCCTGCTGCAGACTCGGCAGGCGGAAACTAAAA
GGAGAACAACGACGTGGCTGCGATGGAAGGGCAGGACGAAGAGGCGCCTG
CTGCAGACTCGGCAGGCGGAAACTAA
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