mRNA_E-siliculosus-1a_F_contig1278.1700.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1278.1700.1
Unique NamemRNA_E-siliculosus-1a_F_contig1278.1700.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1278.1700.1 vs. uniprot
Match: A0A6H5KYU3_9PHAE (DSBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYU3_9PHAE)

HSP 1 Score: 442 bits (1138), Expect = 7.800e-152
Identity = 216/220 (98.18%), Postives = 220/220 (100.00%), Query Frame = 1
Query:  112 MAKFNIKIFSDNVCPWCFVGKRNLESAMKQFAAREPTTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLSMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECTKDYLEGKEGQQEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEALSS 771
            MAKFNIKIFSDNVCPWCFVGKRNLE+AMKQFAAREP+TQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASL+MAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECTKDYLEGKEGQ+EVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEALSS
Sbjct:    1 MAKFNIKIFSDNVCPWCFVGKRNLETAMKQFAAREPSTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLAMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECTKDYLEGKEGQEEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEALSS 220          
BLAST of mRNA_E-siliculosus-1a_F_contig1278.1700.1 vs. uniprot
Match: B7ZGN0_9PHAE (DSBA oxidoreductase n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN0_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 6.780e-120
Identity = 170/220 (77.27%), Postives = 195/220 (88.64%), Query Frame = 1
Query:  112 MAKFNIKIFSDNVCPWCFVGKRNLESAMKQFAAREPTT--QSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLSMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECTKDYLEGKEGQQEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEAL 765
            M KFN+K+ SDNVCPWC+VGKRNLESAMKQFA  +PT   Q PPVFDVRWKPFFLN+++PETSE PI EYLEKKYGKGAGSRMA +L  AG++TGI FNNDR+VHNTIRSHRLVR AD Q KGG+MI+QLFH YFE+G+NIAD DVLLE+A+KAGVECTK+YLEGKEGQQEV++EY+ G+   G+SGVPY+I+SREGSKATVPLSG QPP AFVEAFEAL
Sbjct:    1 MPKFNVKVISDNVCPWCYVGKRNLESAMKQFATSQPTEKEQEPPVFDVRWKPFFLNVKSPETSEEPIQEYLEKKYGKGAGSRMAVALERAGKSTGINFNNDRRVHNTIRSHRLVRLADQQEKGGDMIEQLFHGYFEEGKNIADSDVLLEIAQKAGVECTKEYLEGKEGQQEVLNEYQKGVQTQGVSGVPYYIISREGSKATVPLSGAQPPEAFVEAFEAL 220          
BLAST of mRNA_E-siliculosus-1a_F_contig1278.1700.1 vs. uniprot
Match: A0A835YGU7_9STRA (Protein disulfide isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGU7_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.440e-52
Identity = 98/210 (46.67%), Postives = 132/210 (62.86%), Query Frame = 1
Query:  139 SDNVCPWCFVGKRNLESAMKQFAAREPTTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLSMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVEC-TKDYLEGKEGQQEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEAL 765
            S  VCPWCF+GKR LE+A+++        Q+       WKPFFL+  +P+ S +PI  +L +KYG  AG+RMAASL+ AGE  GI+F  DR V NTI SHRLV  A  QGK   +I+ LF  YFEQG  ++ VD L+ +AE AG+    + YLE  E +  V+ E        GI+GVP+F+++R+G+K  + LSG QP   F EAF+AL
Sbjct:   17 SPPVCPWCFIGKRRLEAAIRERGLGPKDVQT------TWKPFFLDANSPKDSGIPIGVHLRQKYGAQAGARMAASLAAAGEENGIKFKEDRTVQNTIMSHRLVHLAGKQGKQDAVIEALFSGYFEQGAKLSSVDTLVRIAETAGISGDVRAYLESGEDEDVVMREAFDSARRLGITGVPFFVIARDGNKERLTLSGAQPVDVFDEAFDAL 220          
BLAST of mRNA_E-siliculosus-1a_F_contig1278.1700.1 vs. uniprot
Match: B3SBG0_TRIAD (DSBA domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SBG0_TRIAD)

HSP 1 Score: 150 bits (378), Expect = 2.340e-38
Identity = 90/229 (39.30%), Postives = 130/229 (56.77%), Query Frame = 1
Query:  100 LASVMAKFNIKIFSDNVCPWCFVGKRNLESAMKQFAAREPTTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRM---AASLSMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVEC--TKDYLEGKEGQQEVISEYKHGIHNHGISGVPYFIVSREGSK--ATVPLSGGQPPAAFVEAFEAL 765
            + S      I I SD +CPWCFVGKR+LE+AMK F   E T +    FD+ WKPF LN   PE   +P+ EYL ++YG+          +SL  AG   G+ F+++RK  N+IRSH L+ +A  + K  ++ + LF  YF  G NI DV VLL+ A++ G++    K  L+ KE ++++I E K    N  I GVP+F++S  G +    +PL G QP   F   F ++
Sbjct:    1 MGSTKPTIKIDITSDTMCPWCFVGKRHLETAMKDF---ESTFE----FDIEWKPFLLNSNTPEEG-IPVLEYLAQRYGQQVADDARNGTSSLIAAGRKVGLNFDSNRKFVNSIRSHCLLDYARTEKKQNQLAELLFQRYFIDGNNINDVKVLLDCAKEIGLKAEEAKKSLQDKERRKKIIEEAKVATQNQ-IHGVPHFVISLIGDQHGKAMPLHGCQPIEMFRRVFTSI 220          
BLAST of mRNA_E-siliculosus-1a_F_contig1278.1700.1 vs. uniprot
Match: A0A3N4TK56_9STAP (Putative DsbA family dithiol-disulfide isomerase n=7 Tax=Salinicoccus TaxID=45669 RepID=A0A3N4TK56_9STAP)

HSP 1 Score: 145 bits (365), Expect = 1.950e-36
Identity = 82/214 (38.32%), Postives = 126/214 (58.88%), Query Frame = 1
Query:  127 IKIFSDNVCPWCFVGKRNLESAMKQFAAREPTTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGA--GSRMAASLSMAGEATGIRFNNDRKV-HNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVE--CTKDYLEGKEGQQEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEA 753
            I+I+SD  CP+C++GKRN E+ ++QF+ ++         DV  K F L+  AP   +  + E L KKYGK       M   +S A EA G+ FN D  +  NT+ +HRL++ A+G+GK GE ++ L+HAYF +G N+AD +VLL++AE  G+     +  L   + ++ VIS+        G  GVP+F+++R+       +SG QPP AF+EA
Sbjct:    3 IEIWSDIGCPFCYIGKRNFEAGLEQFSGKDEV-------DVIHKSFRLDPSAPMAPDASMAELLAKKYGKSLEEAKEMNRQVSGAAEAAGLEFNLDAVIPSNTMDAHRLIKMAEGEGKDGEALEHLYHAYFTEGSNVADAEVLLDIAETLGMNRGTVEQKLASNDYKEAVISDQNEAT-RLGAQGVPFFVINRK-----YGVSGAQPPEAFLEA 203          
BLAST of mRNA_E-siliculosus-1a_F_contig1278.1700.1 vs. uniprot
Match: UPI000564DB9A (DsbA family oxidoreductase n=1 Tax=Salinicoccus luteus TaxID=367840 RepID=UPI000564DB9A)

HSP 1 Score: 143 bits (361), Expect = 7.200e-36
Identity = 82/216 (37.96%), Postives = 129/216 (59.72%), Query Frame = 1
Query:  127 IKIFSDNVCPWCFVGKRNLESAMKQFAAREPTTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGA--GSRMAASLSMAGEATGIRFNNDRKV-HNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECT--KDYLEGKEGQQEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFE 759
            I+I+SD  CP+C++GKRN E+ +++F +++         +V  K F L+  A    +  + E L KKYGK      +M   +S A EA G+ FN D  V  NT+ +HRL++ A+ +GK GE +D L+HAYF +GRN+A  +V+LE+A+  G++ T  ++ L   + ++ VISE        G  GVP+F+++R+       +SG QPP AF+EA E
Sbjct:    3 IEIWSDIGCPFCYIGKRNFEAGLERFESKDEV-------NVVHKSFRLDPAASTEPDQSMAELLAKKYGKSLEEARQMNRQVSRAAEAAGLEFNMDAVVPSNTMDAHRLIKMAEAEGKDGEALDHLYHAYFTEGRNVARAEVILEIAQTIGMDTTAVEEMLGSNDYKETVISEQNEAT-RLGAQGVPFFVINRK-----YGVSGAQPPEAFLEAIE 205          
BLAST of mRNA_E-siliculosus-1a_F_contig1278.1700.1 vs. uniprot
Match: A0A6A6V021_9PLEO (DSBA oxidoreductase n=1 Tax=Sporormia fimetaria CBS 119925 TaxID=1340428 RepID=A0A6A6V021_9PLEO)

HSP 1 Score: 143 bits (361), Expect = 7.400e-36
Identity = 86/222 (38.74%), Postives = 123/222 (55.41%), Query Frame = 1
Query:  112 MAKFNIKIFSDNVCPWCFVGKRNLESAMKQFAAREPTTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLSMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGE--MIDQLFHAYFEQGRNIADVDVLLELAEKAGVEC--TKDYLEGKEGQQEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEAL 765
            M  FNI I SDNVCPWC++GK+ LESA+  +    P++     F   W PF+LN +AP+TS +    Y   K+G      +   +   GE  GI F    K  NT  SHRLV+    +    E  +I+ LF AYFE+ ++I D +VL+EL  KAG+E    ++++E  +G +EV  E K   +  G+SGVP F+++         + G Q PAAFV+ FE L
Sbjct:    1 MTHFNISIVSDNVCPWCYIGKKRLESAITLYKKSHPSSND--TFSTSWHPFYLNPDAPKTS-VDKRSYYASKFGAERTEMIWERMINLGEQEGINFVLGGKTGNTRDSHRLVQLGKTKSAAMETRVIEVLFEAYFEKSQDITDKNVLVELGVKAGLEEKEVREWMESDKGGKEVDREVKEA-YERGVSGVPNFVIN-----GRFEIGGAQEPAAFVQLFERL 213          
BLAST of mRNA_E-siliculosus-1a_F_contig1278.1700.1 vs. uniprot
Match: A0A433CYQ7_9FUNG (DSBA domain-containing protein n=3 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CYQ7_9FUNG)

HSP 1 Score: 143 bits (361), Expect = 8.960e-36
Identity = 89/227 (39.21%), Postives = 125/227 (55.07%), Query Frame = 1
Query:  127 IKIFSDNVCPWCFVGKRNLESAMKQFAAREPTTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRM------------AASLSMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVE--CTKDYLEGKEGQQEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEAL 765
            I I SD +CPWCFVGKR LE+A+ Q     P T+    F+  W P+ L+   P+ S      Y+ KK+G+    +M            A+S    G+A  I FN   +V NT  SHRLV +A  QGK  EM+++LF  YFEQ R++ADV+ L E+A K G++   T  +L+  EG+ EV +E    +    ISGVP+F++ +        LSG QPP  FVE F+ +
Sbjct:   22 IDIVSDTICPWCFVGKRRLETAIAQAIKAHPGTK----FETVWHPYELDPTLPKESVDKHANYV-KKFGEERMKQMLPYMENIGRLLIASSPQSTGKAENISFNFGGRVGNTTDSHRLVWWATKQGKQDEMVEELFRHYFEQERDVADVETLAEIARKVGLDRNATLAFLQSDEGRAEVKAEIYRNM-GKSISGVPHFMIDKR-----YTLSGAQPPETFVELFDEI 237          
BLAST of mRNA_E-siliculosus-1a_F_contig1278.1700.1 vs. uniprot
Match: A0A6G1FUU3_9PEZI (DSBA oxidoreductase n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1FUU3_9PEZI)

HSP 1 Score: 142 bits (358), Expect = 1.370e-35
Identity = 80/222 (36.04%), Postives = 125/222 (56.31%), Query Frame = 1
Query:  112 MAKFNIKIFSDNVCPWCFVGKRNLESAMKQFAAREPTTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLSMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECT--KDYLEGKEGQQEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEALSS 771
            M +FNI++ SDNVCPWC++GK+ L+ A++Q+ ++ P +Q    +++ WKPF+LN  AP+ S +   EY + K+G      + A+LS  G + GI +    +  NT  SHRLV+    +G G  +I++LF  YFE  ++I     L    E AG++    +D+L   +G +EV  E +   +  G+SGVP F V          + G Q P AFV+ FE + S
Sbjct:    1 MTQFNIQVVSDNVCPWCYMGKKRLDKAIQQYTSKYPDSQD--TWNITWKPFYLNPHAPKAS-VDKAEYYQSKFGPERTRGIFANLSQLGLSEGIHYKFGGRTGNTRDSHRLVQLGRERGLGTRVIEELFKGYFENEQDITSHGFLQTAGEAAGLDAAEVRDWLGSDKGGKEVDREVQEA-YEEGVSGVPNFTVGG------YEIPGAQEPVAFVKLFERIKS 212          
BLAST of mRNA_E-siliculosus-1a_F_contig1278.1700.1 vs. uniprot
Match: A0A2T7C3Y8_9POAL (DSBA domain-containing protein n=5 Tax=Panicum TaxID=4539 RepID=A0A2T7C3Y8_9POAL)

HSP 1 Score: 142 bits (357), Expect = 1.800e-35
Identity = 82/217 (37.79%), Postives = 127/217 (58.53%), Query Frame = 1
Query:  127 IKIFSDNVCPWCFVGKRNLESAMKQFAAREPTTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLSMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQG--KGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECTKDYLE----GKEGQQEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFE 759
            I + SD VCPWCFVGK+NLE AM+Q       T+    F+VRW PFFLN +AP+   +  +++ + K+G     R  + ++      G+ ++      NT+ SHRL+  A+ QG  K   ++++LF +YF QG+ I D  VLL++A K G+E  ++ LE    G +  QE +++Y     +  ISGVP+F+++ +       LSGGQPP+ F+ AFE
Sbjct:   12 IDVSSDTVCPWCFVGKKNLERAMEQ-------TKDKYNFEVRWHPFFLNPDAPKEG-IRKSDFYQMKFGPVQFERATSRMTEIFRGLGLEYDMSGLTGNTMDSHRLITLAEHQGYDKQNALVEELFQSYFCQGKYIGDKQVLLDVARKVGIEGAEELLEDPSRGVDEVQEELNKY-----SSAISGVPHFVINGK-----YQLSGGQPPSVFMRAFE 210          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1278.1700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYU3_9PHAE7.800e-15298.18DSBA domain-containing protein n=2 Tax=Ectocarpus ... [more]
B7ZGN0_9PHAE6.780e-12077.27DSBA oxidoreductase n=1 Tax=Laminaria digitata Tax... [more]
A0A835YGU7_9STRA1.440e-5246.67Protein disulfide isomerase n=1 Tax=Tribonema minu... [more]
B3SBG0_TRIAD2.340e-3839.30DSBA domain-containing protein n=2 Tax=Trichoplax ... [more]
A0A3N4TK56_9STAP1.950e-3638.32Putative DsbA family dithiol-disulfide isomerase n... [more]
UPI000564DB9A7.200e-3637.96DsbA family oxidoreductase n=1 Tax=Salinicoccus lu... [more]
A0A6A6V021_9PLEO7.400e-3638.74DSBA oxidoreductase n=1 Tax=Sporormia fimetaria CB... [more]
A0A433CYQ7_9FUNG8.960e-3639.21DSBA domain-containing protein n=3 Tax=Jimgerdeman... [more]
A0A6G1FUU3_9PEZI1.370e-3536.04DSBA oxidoreductase n=1 Tax=Eremomyces bilateralis... [more]
A0A2T7C3Y8_9POAL1.800e-3537.79DSBA domain-containing protein n=5 Tax=Panicum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1278contigE-siliculosus-1a_F_contig1278:27094..30671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size663
Model size1655
Exons4
Ec32 orthologEc-11_003940.1
Ec32 ortholog descriptionProtein disulfide isomerase
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.Q
EggNOG OGs2QTH7@2759,COG2761@1
EggNOG free text desc.DSBA-like thioredoxin domain
Seed eggNOG ortholog2880.D8LHI5
Seed ortholog evalue4.2e-121
Seed ortholog score440.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1278.1700.1prot_E-siliculosus-1a_F_contig1278.1700.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1278 27975..30560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927798.8583055-UTR-E-siliculosus-1a_F_contig1278:27093..279741622927798.8583055-UTR-E-siliculosus-1a_F_contig1278:27093..27974Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1278 27094..27974 -
1696318684.4320416-UTR-E-siliculosus-1a_F_contig1278:27093..279741696318684.4320416-UTR-E-siliculosus-1a_F_contig1278:27093..27974Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1278 27094..27974 -
1622927798.9265275-UTR-E-siliculosus-1a_F_contig1278:30560..306711622927798.9265275-UTR-E-siliculosus-1a_F_contig1278:30560..30671Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1278 30561..30671 -
1696318684.484072-UTR-E-siliculosus-1a_F_contig1278:30560..306711696318684.484072-UTR-E-siliculosus-1a_F_contig1278:30560..30671Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1278 30561..30671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927798.8704023-CDS-E-siliculosus-1a_F_contig1278:27974..281841622927798.8704023-CDS-E-siliculosus-1a_F_contig1278:27974..28184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1278 27975..28184 -
1696318684.4466383-CDS-E-siliculosus-1a_F_contig1278:27974..281841696318684.4466383-CDS-E-siliculosus-1a_F_contig1278:27974..28184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1278 27975..28184 -
1622927798.8848922-CDS-E-siliculosus-1a_F_contig1278:28643..288981622927798.8848922-CDS-E-siliculosus-1a_F_contig1278:28643..28898Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1278 28644..28898 -
1696318684.4550748-CDS-E-siliculosus-1a_F_contig1278:28643..288981696318684.4550748-CDS-E-siliculosus-1a_F_contig1278:28643..28898Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1278 28644..28898 -
1622927798.899649-CDS-E-siliculosus-1a_F_contig1278:29296..294731622927798.899649-CDS-E-siliculosus-1a_F_contig1278:29296..29473Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1278 29297..29473 -
1696318684.4629881-CDS-E-siliculosus-1a_F_contig1278:29296..294731696318684.4629881-CDS-E-siliculosus-1a_F_contig1278:29296..29473Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1278 29297..29473 -
1622927798.914778-CDS-E-siliculosus-1a_F_contig1278:30539..305601622927798.914778-CDS-E-siliculosus-1a_F_contig1278:30539..30560Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1278 30540..30560 -
1696318684.470678-CDS-E-siliculosus-1a_F_contig1278:30539..305601696318684.470678-CDS-E-siliculosus-1a_F_contig1278:30539..30560Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1278 30540..30560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1278.1700.1

>prot_E-siliculosus-1a_F_contig1278.1700.1 ID=prot_E-siliculosus-1a_F_contig1278.1700.1|Name=mRNA_E-siliculosus-1a_F_contig1278.1700.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=221bp
MAKFNIKIFSDNVCPWCFVGKRNLESAMKQFAAREPTTQSPPVFDVRWKP
FFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLSMAGEATGIRFNNDR
KVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAE
KAGVECTKDYLEGKEGQQEVISEYKHGIHNHGISGVPYFIVSREGSKATV
PLSGGQPPAAFVEAFEALSS*
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mRNA from alignment at E-siliculosus-1a_F_contig1278:27094..30671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1278.1700.1 ID=mRNA_E-siliculosus-1a_F_contig1278.1700.1|Name=mRNA_E-siliculosus-1a_F_contig1278.1700.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3578bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1278:27094..30671- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAACGCCCAACGCCCCACCTCTCGCCTCTCGCCACACAACCGCACAACTG GCTCACAAACACTCGGTGGCTGGCAGCACTGAAGAGGCACTACGCAATTT TAGCGAGCGTCATGGCGAAATTCAACATCAAGGTACGCTTACGTACGGCT GTAGGCAGGAAGATGAGGCGTGAGGGATTCAAAGTACGGCATTGTAGCAA CTGTCCTGAGCGTGTCGGTGTCCAAGGGCGTGTTGGTACCTTGCGGAAGC AGTGCCCCGTTGTTTGGTGCCCCAATACTCTACAACGACACCGCCTCAGC CCTAGTGTTTGATCACGTGGAGGAATGGAGAGTTACTACGGCGGTAAGGC ACGGCGTGGTGCGGCCTACAAATAGACTGGACTTAAGACGGTGCAGACGC TGCGGAAGATTTCCCTGTTTTCCCCCCGCGTCATGTATTGGAAGATCATA TCAATGCGTAGGATCGTGAGATATCTTCTTACCAGTAACTTTGGAACATT TAGAGTTGTGGGCATTCCTAGGAGAGTCTACCCTGTGCAAATTCAATGGA CACCCCACTTCAAGAAAGGCTTCATTTCAACATGCTGGCACAAACTGCGG GAGATTTCCCTATTTTCTCCCCGCGTGGTGTTTTGGAGGATCGTATGTTT AGGATCGATAGATATCTCTAAAACAACTTGGAACATTTAGAGCTGTGGGC ATTCCTAGGAGAGTCTACCCTGTGCAAATTCAATGGACACCCCACTTCAA GAAAGGCTTCATTTCAACATGCTGGCACAAACTGCGGGAGATTTCCTTAT TTCCCCCCCGCGTGATGCTTTGGAGGATCGTATGCGTAGGATATCATGAG AGCATCTCTTCTCACAGAGCAACTTTTTGGAACATTTGGAGCTGTGAGCA TTCCTAGTAGAGTCTACCCTTGGCAAATTCAATGCAAACCCCAGCTTTCA TTACAACATGCTGGCACAATATCGCACATTGTTGAATCAGTTTGCTCTCC CACTTGTTTTGTCGGCCGCGCGTGTTGAGGCTCACAGCAGTTACTTCGGC TCACCGAATCCCATCCCGAAGAGAATATAGCTGCACTACATACAACTCGC GACCCAGCATATTTCGGGGACCTCCTTTACTCGTGTTAATATGCGATCAT GTCAACCTCACGCACGCAAACCCCCGTGTCCTAACCCTGACTCTTCAGAT ATTCAGCGACAATGTCTGCCCGTGGTGCTTCGTCGGCAAGAGGAACCTCG AGAGCGCGATGAAGCAATTCGCTGCGAGGGAACCCACCACCCAAAGCCCC CCCGTCTTCGACGTGCGGTGGAAGCCATTCTTCCTCAACATCGAGGCCCC AGAGACATCGGAGTTGCCCATAACGGTGAGTCCTGTGCTTTGAAAGGCAC TGCTGCTGTGTACACGTTTCATTCCCACCAGACCACCCCAGTGTCCTAAG GATTGATCCAAGTATAATATAGTGTGTCTTGGATGGTTCCGCGGCTGCTC CATCTTGGCAGTGGCGGTGATGCATCCCATTCGCATCGATCGACAAGACA CGCCGATCGTGGAGAACGCGCCGGAGCCAGAGGCCTTGCTCTAGATTCGT TCTCACCATTCTTGACCACCTTCCCGCTGGTTTTCCTGCCGACCGTACGA CCACCCCCGTCGATGCTTGCTCATCTTCGCGCCCATGGACGATCGGCCCG TTAAGGCAAGGAGCTGGTGGTATGAATATCGTCGTTAATTATTTTGCGCA CCACACACACCCCTGTTTCCCAGGAGTACTTGGAAAAGAAATACGGCAAA GGGGCAGGGTCGCGAATGGCGGCGTCGCTGTCGATGGCAGGGGAGGCTAC CGGCATCCGTTTCAACAACGACAGGAAGGTGCACAACACCATCCGCTCGC ACCGTCTTGTTCGATTCGCGGATGGCCAGGGCAAGGGAGGCGAGATGATC GATCAGCTGTTCCACGCCTACTTCGAGCAGGGAAGGAATATCGCGGACGT GGACGTGCTTTTGGAGTTGGCGGAGAAGGTGTGTACTTGTAGAAGCCGAG CAGTAGGCGGGGACACACCCGGCCGCTTGCCGTTGACACACACCCCATCA CCAAATGTTTCTGCCCGTTCTGCTTGGTGGACCATGAACGCTGATCGATT TTGCCTGTTAGACGTAAGAGCTTTCACACGTACATTCCAAACGTGAAACA AAATACCAATTCTGTAGGATAGATTTATGCCGGTATTGAACACTATGATG ATGAAGTCGCCCCCCCCCCCCCCCCCCTCTCTTCCTCAACACATTGATAC ACCCCCTCTCTGCTCGAGAAAGGGGTGTCACGGGTTTCCCTCGCTCCTGC CAACTCTCCACTTGTCGCCCGAAAACGCTCAAAGACCACGCCGCGCCTCT TCGCGCCTTACCACTCCTCCCTCCCTGTGCCTGATCCCCCGGCATGTGTT TTGTTCCCAATCGCCGCTTGAACTTAAATATGCACAGGCTGGAGTTGAGT GCACGAAAGATTACCTTGAGGGCAAGGAAGGACAGCAAGAAGTCATCAGC GAGTATAAACACGGTATCCACAACCACGGTATCTCGGGGGTCCCGTACTT CATCGTGTCGCGCGAGGGTAGCAAGGCAACCGTTCCGCTGTCCGGGGGGC AGCCGCCGGCGGCGTTTGTCGAAGCCTTCGAAGCGTTGTCGTCGTAGTCA GACCACGACTGGGTACATGATCCCCCCCCCCATGAGAGACGTATGAGGTG TGGGGGACGTTGTTTATGTATCGGTGACACCGTTGGATGTGTACAATGTA TGCATACGTAGTCCGTATCTCGACTAGCCGTGAGATACATACCCCGTGAT GTGGCCATGATCAACGTCAACCACGGGCTGGGCATACAACCACCGGCAGG ACCCATGTACACTAGCGCACCGTCGTGGTGTACAATGGGTGCGTAGAGGT TACGATGAGCATTGAAAATTATGCTGGGGATTGCCGTTCACAAGGCAAAA CTGCTGTCTGTGGTCGATGTGGTGGTAAGATCGTGCACCGGTGGATGTAG TTTGGTGGATGTAGTGTACAAGAATGGTGTGCTTTTGAACACCTGGGTGT TGCACACAACATGCTGTGAACTTGAAACAAGTGTTGTTCGTTCGTACCGG AAGTCCCGTACAGCACTACCGCAGAGAGTAGAAAATAGTTGGTTGATACG GGGTGTCTTTGCTTTGGAATCTCGGGGGAATATTAGTGGTGTCAGTATGT CGCCCTTTGGAATTTTGCTTGTTATACGGTTGGACAGGTTCGGAAGTCCC TGGAGGGTAAATCAACCTTGCGTGTGACCCCAGATCCGAGATACCGTAGT TCAAGTCTCGAGGCACCGCGATATGCTGTCGGGTTTTGGTTGTGAAGTGC GTTGGCACCTCAATAGGGCAGTCAACCAGTCACGATAATGCGAACGTTGC TTACAAAGCGGGTGCCTCGGGTATGACTGGCGTGAGCCGTACACAATAAG ATCAAGAGAGAGAACGAGCAAGAATGCGATATGCCGACGAATCACATGTC ATCAGCTTGATGCCACCGTCACTTTCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1278:27094..30671-

>mRNA_E-siliculosus-1a_F_contig1278.1700.1 ID=mRNA_E-siliculosus-1a_F_contig1278.1700.1|Name=mRNA_E-siliculosus-1a_F_contig1278.1700.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1326bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1278:27094..30671- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGAAATTCAACATCAAGATGGCGAAATTCAACATCAAGATATTCAG
CGACAATGTCTGCCCGTGGTGCTTCGTCGGCAAGAGGAACCTCGAGAGCG
CGATGAAGCAATTCGCTGCGAGGGAACCCACCACCCAAAGCCCCCCCGTC
TTCGACGTGCGGTGGAAGCCATTCTTCCTCAACATCGAGGCCCCAGAGAC
ATCGGAGTTGCCCATAACGATATTCAGCGACAATGTCTGCCCGTGGTGCT
TCGTCGGCAAGAGGAACCTCGAGAGCGCGATGAAGCAATTCGCTGCGAGG
GAACCCACCACCCAAAGCCCCCCCGTCTTCGACGTGCGGTGGAAGCCATT
CTTCCTCAACATCGAGGCCCCAGAGACATCGGAGTTGCCCATAACGGAGT
ACTTGGAAAAGAAATACGGCAAAGGGGCAGGGTCGCGAATGGCGGCGTCG
CTGTCGATGGCAGGGGAGGCTACCGGCATCCGTTTCAACAACGACAGGAA
GGTGCACAACACCATCCGCTCGCACCGTCTTGTTCGATTCGCGGATGGCC
AGGGCAAGGGAGGCGAGATGATCGATCAGCTGTTCCACGCCTACTTCGAG
CAGGGAAGGAATATCGCGGACGTGGACGTGCTTTTGGAGTTGGCGGAGAA
GGAGTACTTGGAAAAGAAATACGGCAAAGGGGCAGGGTCGCGAATGGCGG
CGTCGCTGTCGATGGCAGGGGAGGCTACCGGCATCCGTTTCAACAACGAC
AGGAAGGTGCACAACACCATCCGCTCGCACCGTCTTGTTCGATTCGCGGA
TGGCCAGGGCAAGGGAGGCGAGATGATCGATCAGCTGTTCCACGCCTACT
TCGAGCAGGGAAGGAATATCGCGGACGTGGACGTGCTTTTGGAGTTGGCG
GAGAAGGCTGGAGTTGAGTGCACGAAAGATTACCTTGAGGGCAAGGAAGG
ACAGCAAGAAGTCATCAGCGAGTATAAACACGGTATCCACAACCACGGTA
TCTCGGGGGTCCCGTACTTCATCGTGTCGCGCGAGGGTAGCAAGGCAACC
GTTCCGCTGTCCGGGGGGCAGCCGCCGGCGGCGTTTGTCGAAGCCTTCGA
AGCGTTGTCGTCGTAGGCTGGAGTTGAGTGCACGAAAGATTACCTTGAGG
GCAAGGAAGGACAGCAAGAAGTCATCAGCGAGTATAAACACGGTATCCAC
AACCACGGTATCTCGGGGGTCCCGTACTTCATCGTGTCGCGCGAGGGTAG
CAAGGCAACCGTTCCGCTGTCCGGGGGGCAGCCGCCGGCGGCGTTTGTCG
AAGCCTTCGAAGCGTTGTCGTCGTAG
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