mRNA_E-siliculosus-1a_F_contig1270.1663.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1270.1663.1
Unique NamemRNA_E-siliculosus-1a_F_contig1270.1663.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1270.1663.1 vs. uniprot
Match: D7FGW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW1_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.730e-35
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 MGRRKPGKILKMTPG--TKKEAMQRKMKPGLRRSYFTAYHSFLMTAKRALGRCDRQETLEQAVEASLKDCEARER-GGPSEQPDRP 249
            M RRKPGKILKMTPG   KK+ + RKMKPGLRRSYFTA HSF MTAKRALG  DRQETL QAV+ASLKDCEARER GGPSEQPDRP
Sbjct:    1 MRRRKPGKILKMTPGEKAKKDVLLRKMKPGLRRSYFTACHSFYMTAKRALGPHDRQETLAQAVDASLKDCEAREREGGPSEQPDRP 86
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1270.1663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGW1_ECTSI1.730e-3582.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1270contigE-siliculosus-1a_F_contig1270:33760..34715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size249
Model size249
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1270.1663.1prot_E-siliculosus-1a_F_contig1270.1663.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1270 33760..34715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927794.266734-CDS-E-siliculosus-1a_F_contig1270:33759..338051622927794.266734-CDS-E-siliculosus-1a_F_contig1270:33759..33805Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1270 33760..33805 +
1696318682.0079577-CDS-E-siliculosus-1a_F_contig1270:33759..338051696318682.0079577-CDS-E-siliculosus-1a_F_contig1270:33759..33805Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1270 33760..33805 +
1622927794.2816093-CDS-E-siliculosus-1a_F_contig1270:34187..343081622927794.2816093-CDS-E-siliculosus-1a_F_contig1270:34187..34308Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1270 34188..34308 +
1696318682.0173707-CDS-E-siliculosus-1a_F_contig1270:34187..343081696318682.0173707-CDS-E-siliculosus-1a_F_contig1270:34187..34308Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1270 34188..34308 +
1622927794.292157-CDS-E-siliculosus-1a_F_contig1270:34633..347151622927794.292157-CDS-E-siliculosus-1a_F_contig1270:34633..34715Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1270 34634..34715 +
1696318682.0268195-CDS-E-siliculosus-1a_F_contig1270:34633..347151696318682.0268195-CDS-E-siliculosus-1a_F_contig1270:34633..34715Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1270 34634..34715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1270.1663.1

>prot_E-siliculosus-1a_F_contig1270.1663.1 ID=prot_E-siliculosus-1a_F_contig1270.1663.1|Name=mRNA_E-siliculosus-1a_F_contig1270.1663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp
MGRRKPGKILKMTPGTKKEAMQRKMKPGLRRSYFTAYHSFLMTAKRALGR
CDRQETLEQAVEASLKDCEARERGGPSEQPDRP
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mRNA from alignment at E-siliculosus-1a_F_contig1270:33760..34715+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1270.1663.1 ID=mRNA_E-siliculosus-1a_F_contig1270.1663.1|Name=mRNA_E-siliculosus-1a_F_contig1270.1663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=956bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1270:33760..34715+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGAAGGCGAAAGCCCGGGAAGATCCTGAAGATGACGCCAGGTAGTAC
CTAAGACACAACAAACGTACGGGATAGCAAACAGATGCATGCATCTTTAG
CACTGGGCGCGTAGTGTATTCGGAGATCGAGTTGAACGACCGACTGCTCT
AAACGGTTTCGCCACAAGCTGGTTCACGGAAATGACAACAGTTCGCAGTC
GAAAAACGGTGTACTGCTACATTGCCACCAACTCACCCGCATACACCCTG
AAGCCGTCGTGTATGTCGAGGCACCACCCCCGCCATACATAAGTCACAAT
AGCTCGTGAAAGCACGGGGTACTCGCTCGATGGGGGCGCTTCTTGTGACT
CCCCGAACCCGCCCTTCGCCATCGCTTACTGTTTTTGTCTTGCGTGTTTT
TGTCGTTCTCTGTGATCAAGCGAAAAAGCCAAAAAGGAGGCCATGCAGCG
CAAAATGAAGCCAGGACTACGGAGGTCCTACTTCACGGCGTATCATTCTT
TCTTGATGACGGCGAAACGCGCTCTCGGCCGGTGCGACCGCCAGGAAACG
TAATTGAAATTCAGTGAATCATTTACCATATTTTGCTGAAACCTGTCTTG
CCTTAGCAGCAGCAGTATTGACCAAGGCTAACCTCTGTGGTCGCGATTGT
GGAACATTTGTTTGGATCCCTCGAAAGGCACTGTATTATATGGCGGGACC
TGTAAACAAGCGTTGATGTACGGAGCGTGACAAGCCGTTGTCCAAGCCCG
CTGGATAACTCCTGTCCCACATGTGATGGTTGTTGCTCTTGACTGACTGC
ACAAGAGAAACTTTAACTTTCAACACTGAAGCCGCATGCTTCCCTGCACC
ATTGGTGAATGTGCGAGATGGCAGGCTCGAACAGGCTGTGGAAGCATCTC
TCAAGGATTGTGAGGCCAGAGAACGGGGAGGCCCATCCGAGCAGCCAGAT
CGACCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1270:33760..34715+

>mRNA_E-siliculosus-1a_F_contig1270.1663.1 ID=mRNA_E-siliculosus-1a_F_contig1270.1663.1|Name=mRNA_E-siliculosus-1a_F_contig1270.1663.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1270:33760..34715+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGAAGGCGAAAGCCCGGGAAGATCCTGAAGATGACGCCAGGTAATGG
GAAGGCGAAAGCCCGGGAAGATCCTGAAGATGACGCCAGGTACCAAAAAG
GAGGCCATGCAGCGCAAAATGAAGCCAGGACTACGGAGGTCCTACTTCAC
GGCGTATCATTCTTTCTTGATGACGGCGAAACGCGCTCTCGGCCGGTGCG
ACCGCCAGGAAACCCAAAAAGGAGGCCATGCAGCGCAAAATGAAGCCAGG
ACTACGGAGGTCCTACTTCACGGCGTATCATTCTTTCTTGATGACGGCGA
AACGCGCTCTCGGCCGGTGCGACCGCCAGGAAACGCTCGAACAGGCTGTG
GAAGCATCTCTCAAGGATTGTGAGGCCAGAGAACGGGGAGGCCCATCCGA
GCAGCCAGATCGACCTGCTCGAACAGGCTGTGGAAGCATCTCTCAAGGAT
TGTGAGGCCAGAGAACGGGGAGGCCCATCCGAGCAGCCAGATCGACCT
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