prot_E-siliculosus-1a_F_contig1016.164.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1016.164.1
Unique Nameprot_E-siliculosus-1a_F_contig1016.164.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length249
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 7.980e-88
Identity = 216/254 (85.04%), Postives = 218/254 (85.83%), Query Frame = 0
Query:    1 MADAPKKGSGRVRKPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG------QQPQVMVYPQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMGLPGMGFQHPIPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 248
            MADAPKKGSGRVRKPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          QQ QVMVYPQHXXXXXXXXXXXXXXXXXXXXXX         RMGLPGMGFQHP+PXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAE+RQDAKLDWLFQDLS
Sbjct:    1 MADAPKKGSGRVRKPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVVGGAGMQNPPPRTHPPNPYPPGQQQQQVMVYPQHXXXXXXXXXXXXXXXXXXXXXX---------RMGLPGMGFQHPLPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245          
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 4.480e-84
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0
Query:  111 MGLPGMGFQHPIPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 248
            MGLPGMGFQHP+PXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS
Sbjct:    1 MGLPGMGFQHPVPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138          
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.330e-38
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 0
Query:  121 PIPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPR-----LRRVSADEIIEAQQEASAEERQDAKLDWLFQD 246
            P P      +FFPG+ASL EQLDK VMVVLRDGRHLVG+MRSYDQFSNIVLEDTHERHFV  ++GDI LGLY+VRGD++VL+GE+              L+RV+ADEI++AQQE+  +     K++W F D
Sbjct:  107 PXPPVIAPPSFFPGAASLHEQLDKVVMVVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVDP---FKVEWDFGD 234          
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.580e-36
Identity = 70/115 (60.87%), Postives = 92/115 (80.00%), Query Frame = 0
Query:  131 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRL-RRVSADEIIEAQQEASAEERQDAKLDWLF 244
            FF G  SL EQLDK+++VVLRDGRHLVGV+RS+DQFSN+V+E+THERH V  IFGDI LGLY+VRGD +VL+GE+DE +E + +  RRVSA+EI+ AQ+  + E++   K+ W F
Sbjct:    4 FFAGGMSLVEQLDKKILVVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQR--NTEDK--TKVAWDF 114          
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: K3WSU0_GLOUD (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU0_GLOUD)

HSP 1 Score: 132 bits (331), Expect = 1.610e-35
Identity = 64/115 (55.65%), Postives = 88/115 (76.52%), Query Frame = 0
Query:  131 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 244
            +FPGS SL EQLDK+++VVLRDGRHLVG +RS+DQFSNI+LEDT+ERH    +F DI LGL ++RGD +VL+GELDE +E + P ++R S +EI+EA++  +A+     +  W F
Sbjct:    4 YFPGSISLIEQLDKKILVVLRDGRHLVGYIRSFDQFSNIILEDTYERHVADGMFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASIEEILEAEERLNAKGAASVREQWDF 118          
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK)

HSP 1 Score: 125 bits (315), Expect = 3.610e-33
Identity = 65/112 (58.04%), Postives = 85/112 (75.89%), Query Frame = 0
Query:  133 PGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 244
            PG   L EQLDKR+++VL+DGRHL+G +RS+DQFSN+V+E+T ERH V   +GDI LGLYLVRGDA+VL+GE+D+   E   LRRVSADEI+E ++E  +     A+ DW F
Sbjct:    7 PGIMGLVEQLDKRILIVLQDGRHLIGTLRSFDQFSNVVIENTFERHVVDGCYGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELEREKESR----ARDDWDF 113          
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: H3GH42_PHYRM (U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=Peronosporaceae TaxID=4777 RepID=H3GH42_PHYRM)

HSP 1 Score: 123 bits (309), Expect = 3.130e-32
Identity = 58/115 (50.43%), Postives = 86/115 (74.78%), Query Frame = 0
Query:  132 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQ 245
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQ+SNI+LEDT ERH    +F DI LGL ++RGD +VL+GELD  +E + P ++RV  +E++EA+++ +       +  W F+
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGYLRSFDQYSNIILEDTFERHVAGGLFCDIELGLNIIRGDNIVLLGELDSEKERDQPHMKRVELEEVLEAEEQLNEAGNTSVRQQWDFE 119          
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A7S2CG66_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG66_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.400e-31
Identity = 58/113 (51.33%), Postives = 85/113 (75.22%), Query Frame = 0
Query:  133 PGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQ 245
            PG+ASL +QLDKR+++VLRDGRHLVG++RS+DQFSN+VLEDTHERH    +  D++LGL++VRGD +VL+GELD  +E +  L     D ++EA++ ++       K++W F+
Sbjct:   16 PGAASLVDQLDKRILIVLRDGRHLVGILRSFDQFSNMVLEDTHERHVANGLRSDMALGLFIVRGDNIVLLGELDPEKEASSGLIDAEPDVVLEAERNSAF-----TKVEWDFE 123          
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A0P1A9M0_PLAHL (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9M0_PLAHL)

HSP 1 Score: 121 bits (303), Expect = 2.710e-31
Identity = 59/113 (52.21%), Postives = 85/113 (75.22%), Query Frame = 0
Query:  132 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWL 243
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQFSNI+LEDT+ERH    +F DI LGL ++RG  +VL+GELD  +E + P ++RV  +E++EA++  + E      L +L
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGNLRSFDQFSNIILEDTYERHVAGGLFCDIELGLNIIRGGNIVLLGELDSDKERDQPHMKRVKLEEVLEAEERLNEEGNTSLSLSFL 117          
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: W4GB80_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB80_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.790e-31
Identity = 63/114 (55.26%), Postives = 85/114 (74.56%), Query Frame = 0
Query:  132 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 244
            FPG +SL EQLDK+++VVLRDGRHLVG++RS+DQFSNIVLE T ERH V + + DI LGLY++RG+ +VLMGELD+ +E E   L R SA+E++ A+ E + +     +  W F
Sbjct:    7 FPGVSSLVEQLDKQLLVVLRDGRHLVGIIRSFDQFSNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQGLPTVRDAWNF 120          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKJ0_9PHAE7.980e-8885.04U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
D8LL00_ECTSI4.480e-8499.28U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A835ZG91_9STRA1.330e-3859.54U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=T... [more]
A0A7S2XVC4_9STRA3.580e-3660.87U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=F... [more]
K3WSU0_GLOUD1.610e-3555.65U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=G... [more]
A0A6V1WH12_HETAK3.610e-3358.04U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=H... [more]
H3GH42_PHYRM3.130e-3250.43U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=... [more]
A0A7S2CG66_9STRA1.400e-3151.33U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=D... [more]
A0A0P1A9M0_PLAHL2.710e-3152.21U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]
W4GB80_9STRA2.790e-3155.26U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 136..204
e-value: 1.4E-17
score: 74.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 138..203
e-value: 1.8E-15
score: 56.3
NoneNo IPR availableGENE3D2.30.30.100coord: 135..242
e-value: 6.4E-31
score: 108.7
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 130..238
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 130..238
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 136..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1016contigE-siliculosus-1a_F_contig1016:31789..33635 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1016.164.1mRNA_E-siliculosus-1a_F_contig1016.164.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1016 31162..34582 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1016.164.1 ID=prot_E-siliculosus-1a_F_contig1016.164.1|Name=mRNA_E-siliculosus-1a_F_contig1016.164.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=249bp
MADAPKKGSGRVRKPQQQQQQQQQQRPQAPQGGAAGAPRGARAAVVGGAG
MQPPPPRTHPPNPPPPGQQPQVMVYPQHPQHHLQQHQQHQQHQQHQQHPQ
HPQHPQHPQRMGLPGMGFQHPIPPPPPPPAFFPGSASLFEQLDKRVMVVL
RDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALV
LMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR001163LSM_dom_euk/arc