mRNA_E-siliculosus-1a_F_contig1016.164.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1016.164.1
Unique Name	mRNA_E-siliculosus-1a_F_contig1016.164.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 6.220e-84
Identity = 215/254 (84.65%), Postives = 217/254 (85.43%), Query Frame = 3

Query:  165 MADAPKKGSGRVRKPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG------QQPQVMVYPQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMGLPGMGFQHPIPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 908
            MADAPKKGSGRVRKPQQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          QQ QVMVYPQHXXXXXXXXXXXXXXXXXXXXXX         RMGLPGMGFQHP+PXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAE+RQDAKLDWLFQDLS
Sbjct:    1 MADAPKKGSGRVRKPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVVGGAGMQNPPPRTHPPNPYPPGQQQQQVMVYPQHXXXXXXXXXXXXXXXXXXXXXX---------RMGLPGMGFQHPLPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245

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BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 1.050e-80
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 3

Query:  495 MGLPGMGFQHPIPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 908
            MGLPGMGFQHP+PXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS
Sbjct:    1 MGLPGMGFQHPVPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138

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BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.460e-36
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 3

Query:  525 PIPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPR-----LRRVSADEIIEAQQEASAEERQDAKLDWLFQD 902
            P P      +FFPG+ASL EQLDK VMVVLRDGRHLVG+MRSYDQFSNIVLEDTHERHFV  ++GDI LGLY+VRGD++VL+GE+              L+RV+ADEI++AQQE+  +     K++W F D
Sbjct:  107 PXPPVIAPPSFFPGAASLHEQLDKVVMVVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVD---PFKVEWDFGD 234

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BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA)

HSP 1 Score: 133 bits (335), Expect = 8.350e-34
Identity = 69/115 (60.00%), Postives = 88/115 (76.52%), Query Frame = 3

Query:  555 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRL-RRVSADEIIEAQQEASAEERQDAKLDWLF 896
            FF G  SL EQLDK+++VVLRDGRHLVGV+RS+DQFSN+V+E+THERH V  IFGDI LGLY+VRGD +VL+GE+DE +E + +  RRVSA+EI+ AQ+          K+ W F
Sbjct:    4 FFAGGMSLVEQLDKKILVVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQRNTE----DKTKVAWDF 114

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BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: K3WSU0_GLOUD (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU0_GLOUD)

HSP 1 Score: 132 bits (332), Expect = 2.530e-33
Identity = 64/115 (55.65%), Postives = 88/115 (76.52%), Query Frame = 3

Query:  555 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 896
            +FPGS SL EQLDK+++VVLRDGRHLVG +RS+DQFSNI+LEDT+ERH    +F DI LGL ++RGD +VL+GELDE +E + P ++R S +EI+EA++  +A+     +  W F
Sbjct:    4 YFPGSISLIEQLDKKILVVLRDGRHLVGYIRSFDQFSNIILEDTYERHVADGMFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASIEEILEAEERLNAKGAASVREQWDF 118

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BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK)

HSP 1 Score: 126 bits (316), Expect = 4.230e-31
Identity = 63/105 (60.00%), Postives = 82/105 (78.10%), Query Frame = 3

Query:  561 PGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQD 875
            PG   L EQLDKR+++VL+DGRHL+G +RS+DQFSN+V+E+T ERH V   +GDI LGLYLVRGDA+VL+GE+D+   E   LRRVSADEI+E ++E  +  R D
Sbjct:    7 PGIMGLVEQLDKRILIVLQDGRHLIGTLRSFDQFSNVVIENTFERHVVDGCYGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELEREKESRARDD 110

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BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: H3GH42_PHYRM (U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=Peronosporaceae TaxID=4777 RepID=H3GH42_PHYRM)

HSP 1 Score: 124 bits (311), Expect = 2.370e-30
Identity = 58/115 (50.43%), Postives = 86/115 (74.78%), Query Frame = 3

Query:  558 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQ 899
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQ+SNI+LEDT ERH    +F DI LGL ++RGD +VL+GELD  +E + P ++RV  +E++EA+++ +       +  W F+
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGYLRSFDQYSNIILEDTFERHVAGGLFCDIELGLNIIRGDNIVLLGELDSEKERDQPHMKRVELEEVLEAEEQLNEAGNTSVRQQWDFE 119

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BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A7S2CG66_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG66_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.360e-29
Identity = 58/114 (50.88%), Postives = 86/114 (75.44%), Query Frame = 3

Query:  561 PGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQD 902
            PG+ASL +QLDKR+++VLRDGRHLVG++RS+DQFSN+VLEDTHERH    +  D++LGL++VRGD +VL+GELD  +E +  L     D ++EA++ ++       K++W F++
Sbjct:   16 PGAASLVDQLDKRILIVLRDGRHLVGILRSFDQFSNMVLEDTHERHVANGLRSDMALGLFIVRGDNIVLLGELDPEKEASSGLIDAEPDVVLEAERNSAF-----TKVEWDFEN 124

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BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A0P1A9M0_PLAHL (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9M0_PLAHL)

HSP 1 Score: 121 bits (304), Expect = 2.530e-29
Identity = 59/113 (52.21%), Postives = 85/113 (75.22%), Query Frame = 3

Query:  558 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWL 893
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQFSNI+LEDT+ERH    +F DI LGL ++RG  +VL+GELD  +E + P ++RV  +E++EA++  + E      L +L
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGNLRSFDQFSNIILEDTYERHVAGGLFCDIELGLNIIRGGNIVLLGELDSDKERDQPHMKRVKLEEVLEAEERLNEEGNTSLSLSFL 117

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BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: W4GB80_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB80_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.600e-29
Identity = 63/114 (55.26%), Postives = 85/114 (74.56%), Query Frame = 3

Query:  558 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 896
            FPG +SL EQLDK+++VVLRDGRHLVG++RS+DQFSNIVLE T ERH V + + DI LGLY++RG+ +VLMGELD+ +E E   L R SA+E++ A+ E + +     +  W F
Sbjct:    7 FPGVSSLVEQLDKQLLVVLRDGRHLVGIIRSFDQFSNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQGLPTVRDAWNF 120

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JKJ0_9PHAE	6.220e-84	84.65	U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E...	[more]
D8LL00_ECTSI	1.050e-80	99.28	U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E...	[more]
A0A835ZG91_9STRA	2.460e-36	59.54	U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=T...	[more]
A0A7S2XVC4_9STRA	8.350e-34	60.00	U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=F...	[more]
K3WSU0_GLOUD	2.530e-33	55.65	U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=G...	[more]
A0A6V1WH12_HETAK	4.230e-31	60.00	U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=H...	[more]
H3GH42_PHYRM	2.370e-30	50.43	U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=...	[more]
A0A7S2CG66_9STRA	1.360e-29	50.88	U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=D...	[more]
A0A0P1A9M0_PLAHL	2.530e-29	52.21	U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P...	[more]
W4GB80_9STRA	2.600e-29	55.26	U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=A...	[more]

Pages

Properties


Property Name	Value
Start	1
Stop	1
Cds size	747
Model size	1538
Exons	4
Ec32 ortholog	Ec-11_006170.1
Ec32 ortholog description	Sm-like protein LSm1
Hectar predicted targeting category	other localisation
BRITE	ko00000,ko00001,ko00002,ko03009,ko03019
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	J
EggNOG OGs	KOG1782@1,KOG1782@2759
EggNOG free text desc.	deadenylation-dependent decapping of nuclear-transcribed mRNA
GOs	GO:0000288,GO:0000290,GO:0000291,GO:0000339,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005845,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009628,GO:0009631,GO:0009651,GO:0009892,GO:0009987,GO:0010035,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0010721,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019827,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030424,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033962,GO:0034518,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036002,GO:0036464,GO:0036477,GO:0042221,GO:0042538,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065003,GO:0065007,GO:0070925,GO:0071044,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0098727,GO:0120025,GO:0120038,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990124,GO:1990726,GO:1990904,GO:2000026
KEGG Module	M00146,M00397
KEGG Pathway	ko00190,ko01100,ko03018,ko04714,ko04723,ko04913,ko04925,ko04927,ko04932,ko04934,ko04979,ko05010,ko05012,ko05016,map00190,map01100,map03018,map04714,map04723,map04913,map04925,map04927,map04932,map04934,map04979,map05010,map05012,map05016
KEGG TC	3.D.1.6
KEGG ko	ko:K03952,ko:K12620,ko:K14794,ko:K16931
Preferred name	LSM1
Seed eggNOG ortholog	2880.D8LL00
Seed ortholog evalue	3e-67
Seed ortholog score	261.9
Taxonomic scope	Eukaryota

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1016.164.1	prot_E-siliculosus-1a_F_contig1016.164.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig1016 31789..33635 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927518.1593163-UTR-E-siliculosus-1a_F_contig1016:31161..31788	1622927518.1593163-UTR-E-siliculosus-1a_F_contig1016:31161..31788	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1016 31162..31788 -
1696318564.51175-UTR-E-siliculosus-1a_F_contig1016:31161..31788	1696318564.51175-UTR-E-siliculosus-1a_F_contig1016:31161..31788	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1016 31162..31788 -
1622927518.224213-UTR-E-siliculosus-1a_F_contig1016:33635..33758	1622927518.224213-UTR-E-siliculosus-1a_F_contig1016:33635..33758	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1016 33636..33758 -
1696318564.5562608-UTR-E-siliculosus-1a_F_contig1016:33635..33758	1696318564.5562608-UTR-E-siliculosus-1a_F_contig1016:33635..33758	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1016 33636..33758 -
1622927518.2368076-UTR-E-siliculosus-1a_F_contig1016:34541..34582	1622927518.2368076-UTR-E-siliculosus-1a_F_contig1016:34541..34582	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1016 34542..34582 -
1696318564.5732534-UTR-E-siliculosus-1a_F_contig1016:34541..34582	1696318564.5732534-UTR-E-siliculosus-1a_F_contig1016:34541..34582	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1016 34542..34582 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927518.17348-CDS-E-siliculosus-1a_F_contig1016:31788..31991	1622927518.17348-CDS-E-siliculosus-1a_F_contig1016:31788..31991	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1016 31789..31991 -
1696318564.5250301-CDS-E-siliculosus-1a_F_contig1016:31788..31991	1696318564.5250301-CDS-E-siliculosus-1a_F_contig1016:31788..31991	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1016 31789..31991 -
1622927518.195985-CDS-E-siliculosus-1a_F_contig1016:32582..32685	1622927518.195985-CDS-E-siliculosus-1a_F_contig1016:32582..32685	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1016 32583..32685 -
1696318564.534251-CDS-E-siliculosus-1a_F_contig1016:32582..32685	1696318564.534251-CDS-E-siliculosus-1a_F_contig1016:32582..32685	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1016 32583..32685 -
1622927518.2100945-CDS-E-siliculosus-1a_F_contig1016:33194..33635	1622927518.2100945-CDS-E-siliculosus-1a_F_contig1016:33194..33635	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1016 33195..33635 -
1696318564.5431612-CDS-E-siliculosus-1a_F_contig1016:33194..33635	1696318564.5431612-CDS-E-siliculosus-1a_F_contig1016:33194..33635	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1016 33195..33635 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1016:31162..34582-
coding sequence from alignment at E-siliculosus-1a_F_contig1016:31162..34582-

protein sequence of mRNA_E-siliculosus-1a_F_contig1016.164.1

>prot_E-siliculosus-1a_F_contig1016.164.1 ID=prot_E-siliculosus-1a_F_contig1016.164.1|Name=mRNA_E-siliculosus-1a_F_contig1016.164.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=249bp
MADAPKKGSGRVRKPQQQQQQQQQQRPQAPQGGAAGAPRGARAAVVGGAG
MQPPPPRTHPPNPPPPGQQPQVMVYPQHPQHHLQQHQQHQQHQQHQQHPQ
HPQHPQHPQRMGLPGMGFQHPIPPPPPPPAFFPGSASLFEQLDKRVMVVL
RDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALV
LMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS*

mRNA from alignment at E-siliculosus-1a_F_contig1016:31162..34582-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1016.164.1 ID=mRNA_E-siliculosus-1a_F_contig1016.164.1|Name=mRNA_E-siliculosus-1a_F_contig1016.164.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3421bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1016:31162..34582- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCTGCCTTCTGGTCGTCCGCCGTGTTGTAGAAGCTATCAGGTGCGTTAA
CGTGTCGTCGTAGCATGGCATTGGTGTATTATTGTGCTCGTAGGTGAAGC
AGAGGGGTGACGTCGGCACACCCAAAATCTTCTCCTAATCCCTGTTGAGC
GTTTTGGAAAACAGCTCTTGAAAAGGTACGAAGCGGTGTGTGCTGCCTCG
CTGCTCTCCGAGATATTCATATTGTTGTCAAGCATGTTATGTATACCAAC
ACGTGGGGTAGCTGTTTCTGTTGCTTGTTACTGACTGAGGCATTTTCCGG
TCGGTGCCACTGCGTTACTGCTTCACAAGCACATGGTCGTTATCTGCCCG
ATGACATCATATGGACGTGTTCGTCTCTCGCTGCGGTTCAGCTGATGCCG
CAGCGACACCGGTCGACTGCACGTGTTGCACACTTACGACTAACTGCTGT
AGGAACACAACGGGATCGTACCTCCCGCGCTGCTGATGTGATGATGACGC
TGCAGTTACAACAGTAGATATCAAGTACCGCTGTAAAAACAAACGGCTGT
CTGTGGCAAAATAATCCTCTACTCCAGCCGGTGTCCCTCCACTCACTGAA
GAGACTTCAGCACATCCCTTTCGACTACTGCTCTGTTATATCTCGAACAG
GTAGTCTTTCTGTGTTCATGTATATTTCCAATAGTCCTCTTGTGTCGGCG
AACGGTGTACGGACTGCAATACGCATACACCCTGCTTTCCCGAGAGAGCG
AGGTACGCTGAACCCATCGTGATGTCGCTCCTCAAAACGTGTCGTGCCTT
GCAACCATGCCGAATCTCTCCCAGAGCGAAGCAGCTGTCGAACAAGTGAC
CAACAGCAGGGGCGCGGCTTTTGGCGGTGGCGCGGGCTGGCGAGGAGGAC
ATATTAGTCCACCACATCGCAATTTAGTCGGCACGACTTCCTTAGCCATG
GCGGATGCTCCTAAGAAAGGCTCCGGCAGGGTTCGAAAGCCACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCGCCCACAAGCACCACAAGGGGGAGCGG
CCGGCGCACCGAGAGGGGCGAGGGCCGCGGTAGTTGGAGGGGCAGGGATG
CAACCCCCCCCTCCTAGAACACACCCACCTAATCCCCCCCCCCCCGGGCA
GCAGCCGCAGGTAATGGTGTACCCCCAACACCCCCAGCACCATCTACAAC
AACACCAACAACACCAACAACACCAACAACACCAACAGCATCCGCAGCAT
CCCCAGCATCCCCAGCACCCGCAACGGATGGGGCTCCCTGGGATGGGCTT
TCAGCACCCCATACCGCCCCCGCCACCACCCCCGGCGTTTTTTCCTGGGT
CGGCGAGTCTGTTCGAGCAGCTCGACAAGCGGGTCATGGTGGGTACTTGA
TACGGGGAGACAGGGGTAGAGCTGCATGTGTAAGTGTCCTCACCTGTTGT
AGAGCGATATGGTCCTTTCAACTGCAGTCAAGCCTTCTCAGTCCTGGCAT
TGAGCCTCGATTGTTTCATGGTCCACGCACCTCCCGCTGCACTACTGTTC
TACTGTACAGGAGGGTGTGTTCCCTTTGTTGTCTACGAGCCCGCGGTATA
GCAGCAGGCGAAGTGGTGCTGCTGTTATGCCCAGCCGCAACAATGCCGCA
AAAGTCTGGTAGATCACGCTTGCAACCGTTGCCGACGAGGATGTTCAAGA
ACTCCCTCCCGAACGGAGTTGCATTGACGACGCGATGCTGTTTGTGCGTA
CCTCAGGGGGGGGGATTCTTTGTTCATGCGTTGGACGTTTGTGTTCGTTT
TAAGGATACGGCGTTGATGAGGATGAAAGTGATGGATGGCGGCTTGTAGA
TAGTTAAACCCAACAATAATCACAACACCCCGCACCAACGACAACAGGTC
GTTCTTCGCGACGGTAGGCACCTGGTGGGAGTTATGAGAAGCTACGACCA
GTTTTCCAACATCGTGCTGGAAGACACGCACGAACGACACTTTGTGAGAG
GTGAGCTTCAGCAAACTCTTACACAAAGCCATGTGTCTGGTCGGAAATGT
TCATCCGCTCGACGTTGTTCTCCCCCACCAATGTGTTTTGCGTGACACGT
CCTTCGTGCTCGCGTGTACTCGAAAGCTCGTGCTGCGTTGTCATCAGCCG
AGACTATTCCGCTGTTTTCACGAGTGACCCGGGCGGACCCCGTAATTAAT
TCATGATCCTGACCCTTTGGAAATCACGTACCATGGTATTTTATGTATCT
TGAGAAGCTGTGCGCAGAAGAATGGTTGACTGCAAGAGATGTTCTTTGGA
TCGCTTCGAGCATTCTCCAACATAAGTTGCTCAGTCAATTTCAACAGCAG
TCGTCCCGTTTAGAGACACCGTCATGGCAATCCGGACCAGGAGTCCCGGT
CAGAGTATTTTTGTTTTGAGCCGAAGTTTTTCACCGGGGAACATTCATCG
GTATTGCAGCACGTATCCAAACGGGTAGGCGCGATGCACTTTAGTTCGAG
CGTTGGTTTTGCCGTCTCGTCCGAAATGTCCTCGTACAGCTGCATGCGCC
AACGCTCCCCACTCGTACCCGCCACCCGGTTGGTGCCGCAGATATTTTCG
GGGATATATCGCTTGGGCTTTACCTTGTCCGAGGGGATGCTCTGGTGTTG
ATGGGGGAACTCGACGAGACCCGGGAGGAAACTCCCAGGCTGAGAAGGGT
CTCCGCGGACGAGATAATCGAGGCGCAGCAGGAGGCATCGGCAGAGGAGC
GCCAAGACGCGAAGCTAGACTGGTTGTTCCAGGACTTGTCGTGATTGTGA
TGTCGTGCGCTTTTCGTCTCTCCACCCGCTGGTGCTGGCTGTATTTCCAA
CCTCTAGACCAACGCGGGCACCGATGGTTTACACAATTGTTTTGGAAGAT
GCGTTGCTGATGTGATGGTTTGATGCTGCTGCGGTCTTTGTGCCAAAACT
TGCAGCGCTCTGGCTTCCTCTCGTTTGTGTCCGGGCCTGTTGCTAGCGCA
AGTCGCGTCTCTGGAAGGATGAGGAAATAATGAAGTGGTTACAGGGGGGT
GATTGTATGGAAACAGGCAAGTAGCGGCTGACCCTTGGATGCCCTGTTGA
AGGAGTACTGTGGTGCAGTCATTGTCCAGTGTTGAAAATATAGGCAGCCC
TTTTGTGATATGTTGGTCGGGTTGCGCAGAGCGGACAATCGAAGTCGTCT
GCGTCCACCCGGTGTTTGGGACGTGTTTTTCGACTTGGGGAACCTGTCGG
GAACAATAGTTTGCTCATTCAGTGATACAAGTGTATACTGTAGATTGATA
TCAAAATCCGTCAACCAGAGTGTCCATTCAAAAAACGATTGCCGATACGG
GGATGGGTTGGCCGATATGGGCTCTAAATGCGACATACAAGCATGCAACG
TAGAGACTCCGAAGCACTGAC

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1016:31162..34582-

>mRNA_E-siliculosus-1a_F_contig1016.164.1 ID=mRNA_E-siliculosus-1a_F_contig1016.164.1|Name=mRNA_E-siliculosus-1a_F_contig1016.164.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1494bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1016:31162..34582- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGATGCTCCTAAGAAAGGCTCCGGCAGGGTTCGAAAGCCACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCGCCCACAAGCACCACAAGGGGGAG
CGGCCGGCGCACCGAGAGGGGCGAGGGCCGCGGTAGTTGGAGGGGCAGGG
ATGCAACCCCCCCCTCCTAGAACACACCCACCTAATCCCCCCCCCCCCGG
GCAGCAGCCGCAGGTAATGGTGTACCCCCAACACCCCCAGCACCATCTAC
AACAACACCAACAACACCAACAACACCAACAACACCAACAGCATCCGCAG
CATCCCCAGCATCCCCAGCACCCGCAACGGATGGGGCTCCCTGGGATGGG
CTTTCAGCACCCCATACCGCCCCCGCCACCACCCCCGGCGTTTTTTCCTG
GGTCGGCGAGTCTGTTCGAGCAGCTCGACAAGCGGGTCATGATGGCGGAT
GCTCCTAAGAAAGGCTCCGGCAGGGTTCGAAAGCCACAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCGCCCACAAGCACCACAAGGGGGAGCGGCCGGCG
CACCGAGAGGGGCGAGGGCCGCGGTAGTTGGAGGGGCAGGGATGCAACCC
CCCCCTCCTAGAACACACCCACCTAATCCCCCCCCCCCCGGGCAGCAGCC
GCAGGTAATGGTGTACCCCCAACACCCCCAGCACCATCTACAACAACACC
AACAACACCAACAACACCAACAACACCAACAGCATCCGCAGCATCCCCAG
CATCCCCAGCACCCGCAACGGATGGGGCTCCCTGGGATGGGCTTTCAGCA
CCCCATACCGCCCCCGCCACCACCCCCGGCGTTTTTTCCTGGGTCGGCGA
GTCTGTTCGAGCAGCTCGACAAGCGGGTCATGGTCGTTCTTCGCGACGGT
AGGCACCTGGTGGGAGTTATGAGAAGCTACGACCAGTTTTCCAACATCGT
GCTGGAAGACACGCACGAACGACACTTTGTGAGAGGTCGTTCTTCGCGAC
GGTAGGCACCTGGTGGGAGTTATGAGAAGCTACGACCAGTTTTCCAACAT
CGTGCTGGAAGACACGCACGAACGACACTTTGTGAGAGATATTTTCGGGG
ATATATCGCTTGGGCTTTACCTTGTCCGAGGGGATGCTCTGGTGTTGATG
GGGGAACTCGACGAGACCCGGGAGGAAACTCCCAGGCTGAGAAGGGTCTC
CGCGGACGAGATAATCGAGGCGCAGCAGGAGGCATCGGCAGAGGAGCGCC
AAGACGCGAAGCTAGACTGGTTGTTCCAGGACTTGTCGTGAATATTTTCG
GGGATATATCGCTTGGGCTTTACCTTGTCCGAGGGGATGCTCTGGTGTTG
ATGGGGGAACTCGACGAGACCCGGGAGGAAACTCCCAGGCTGAGAAGGGT
CTCCGCGGACGAGATAATCGAGGCGCAGCAGGAGGCATCGGCAGAGGAGC
GCCAAGACGCGAAGCTAGACTGGTTGTTCCAGGACTTGTCGTGA