mRNA_E-siliculosus-1a_F_contig1265.1632.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A6H5L0J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J1_9PHAE) HSP 1 Score: 377 bits (967), Expect = 5.230e-127 Identity = 215/316 (68.04%), Postives = 224/316 (70.89%), Query Frame = 1
Query: 34 AENGSGT--ATIFAPPWALKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRG--------------------------------------------------------------RGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAAALANGNAARFLAKP 789
AE G T ++ F L YAHARS+EWLRDLTALLEQHPHALVG LDKVARTPDTRRVEWDD QMELAARMSRPVSVHCVKAHGKLVDCLRG RG GGDGL+ERKTG PP+GGQKEG+NGLGGERKRWRLPPRIALHSFTGSVE+AKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVL+VVPDSRILIETDRRAPAREA EELLRVC AIAEAKGVS EEAAALA+GNAARFLA P
Sbjct: 47 AEKGESTTDSSFFKFGLGLHPWYAHARSKEWLRDLTALLEQHPHALVG---LDKVARTPDTRRVEWDD-------QMELAARMSRPVSVHCVKAHGKLVDCLRGSGLDGPATHNSXXXXXXXXXXXXXXXXXXXXXADKGRAQSGVEGXXXXXSVLAEGGIGGDFCRGGGGDGLIERKTGCPPAGGQKEGHNGLGGERKRWRLPPRIALHSFTGSVEVAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLKVVPDSRILIETDRRAPAREAVEELLRVCDAIAEAKGVSAEEAAALASGNAARFLAMP 352
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: D8LRA6_ECTSI (Cut9 interacting protein Scn1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA6_ECTSI) HSP 1 Score: 340 bits (873), Expect = 4.620e-115 Identity = 176/202 (87.13%), Postives = 180/202 (89.11%), Query Frame = 1
Query: 1 MSSLNERRRDHAENGSGTATIFAPPWALKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLV 606
MSSLNERRRDHAEN SGTATI +RYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQ QMELAARMSRPVSVHCVKAHGKLVD LRG LMERKTGR P+GGQKE YNG+GGE KRWRLPPRIALHSFTGSVE+AKDITRLGARR YGSEVFFGFSAAVNMRGDRETKRLV
Sbjct: 1 MSSLNERRRDHAENVSGTATIC-------MRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQAQMELAARMSRPVSVHCVKAHGKLVDYLRG-------LMERKTGRSPAGGQKEEYNGMGGEGKRWRLPPRIALHSFTGSVEVAKDITRLGARRDYGSEVFFGFSAAVNMRGDRETKRLV 188
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: L8HCX4_ACACA (Cut9 interacting protein Scn1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCX4_ACACA) HSP 1 Score: 151 bits (382), Expect = 2.370e-39 Identity = 90/254 (35.43%), Postives = 138/254 (54.33%), Query Frame = 1
Query: 31 HAENGSGTATIFAP-PWALKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAAALANGNAARFLAKP 789
H+ G FA PW YAH R +WL +L ALL ++P A+VGEIGLD+ A TPDT R E QLEVF+ Q LA R+ RPVS+HCV+A G+ + ++ + ++ G + LPP I +HS+ G+ + +T + ++G GS +F FS +NMR + + V+V++ +P R+LIETD+ P ++++ +C +A+A+G S+E+AA + NA R P
Sbjct: 65 HSRYGDKVRAAFAVHPW-----YAHRRGSDWLEELEALLRRNPAAIVGEIGLDRAATTPDTGRCEHQHQLEVFEKQFRLAGRLQRPVSIHCVRAFGQFFEAVQ--------QILKEDG-------------------KMALPPSIIMHSYGGTAGMMDSLTTM--KQGIGSRFYFSFSPVINMR----SPKTVEVIKHIPQDRLLIETDQNTPT-SIEDDIMEMCEIVAKARGWSVEQAARITLENAQRVFDFP 279
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A7S1XY07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY07_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.880e-35 Identity = 93/241 (38.59%), Postives = 128/241 (53.11%), Query Frame = 1
Query: 61 IFAPPWALKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAAALANGNAARFLA 783
+ P + + +AH W+ L L HP AL+GEIGLDK ARTP+TRR E++ Q EVF Q+ LAA + RPVSVHCV++ GKL G+ME G +G LPP IALHS+ S + L +E++ GFS A+N R + + ++L++ + VVPD R+L+E+D P + E L +C AEAKG S+EE A NA RF+A
Sbjct: 38 VAVPAFGVHPWFAHRAENGWIERLRLRLASHPAALLGEIGLDKAARTPETRRCEYEAQQEVFAAQLALAAELRRPVSVHCVRSVGKLF-----------GMME--AGAAAAG-----------------LPPAIALHSYGSSPDWIPRYLALP------TELYVGFSYAINGR-ENQREKLLENIAVVPDDRLLLESDLECPL-DIEEHLRAMCAIFAEAKGWSLEETAERTWANAERFVA 240
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A835WLZ6_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WLZ6_9CHLO) HSP 1 Score: 136 bits (343), Expect = 1.530e-33 Identity = 87/218 (39.91%), Postives = 126/218 (57.80%), Query Frame = 1
Query: 97 AHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAA 747
A A EEWL L LL +HPHALVGE GLD+ A P TR + W+ QL + + + LAA + RPVS+HCV+ +G L GR G D M R+ G P+G PP+I LHS+ GSV++ K T++ G G ++F FS +N R + ++L++ L VP R+L+E+D+ +PA + L+ + GA+AEA+GVS++ AA
Sbjct: 123 AVAAPEEWLPRLRELLARHPHALVGEFGLDRAAVVPGTRLQPGWEHQLALTEAHLRLAAELGRPVSMHCVQGYGHLQVGAGGRAGGWD--MLRRLG--PAG-----------------CPPKIMLHSYGGSVDLIKGFTKMPG--GLGERIYFSFSDVINGRKPGQREKLLERLAAVPAGRLLLESDQNSPAGIDSG-LVDILGAVAEARGVSVDAAA 316
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: L8GPB7_ACACA (TatDrelated DNase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPB7_ACACA) HSP 1 Score: 130 bits (326), Expect = 3.070e-32 Identity = 81/209 (38.76%), Postives = 115/209 (55.02%), Query Frame = 1
Query: 94 YAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSE-VFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAE 717
+AH +E WL +L L +P A+VGEIGLDK A TPDT R E+D Q F Q +LA + RP+S HCV+A G ++ R D LM G+++ + R LPP I +HSF G+V + + R+G E ++F FS VNMR + +DV++ VP+ R+LIE+D+ +PA E+L RVC +AE
Sbjct: 42 FAHRLAEGWLEELREKLVANPRAIVGEIGLDKAAITPDTARNEYDAQTTAFTAQFDLAVELQRPISFHCVRAFGHVMTLFRQHALRYDQLMRS--------GEED--------KARGTLPPAIIMHSFAGTVGGMESLLSNKGRKGNIQERLYFSFSKIVNMRAPKT----IDVIKAVPEDRLLIESDQHSPAH-GEEDLSRVCEIVAE 229
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A835T7X1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T7X1_CHLIN) HSP 1 Score: 130 bits (326), Expect = 8.300e-31 Identity = 86/242 (35.54%), Postives = 122/242 (50.41%), Query Frame = 1
Query: 25 RDHAENGSGTATIFAPPWALKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAA 747
RD AE G P + + A EEW+ L LL +HPHALVGE GLD+ A P TR + W QL + + + LA + RPVS+HCV+ +G L D LR G G PP+I LHS+ GSVE+ K ++ G G ++F FS +N R + +L++ L VP R+L+E+D+ +PA + L+ + A+AEA+GVS+E AA
Sbjct: 103 RDSAEAHPGLLAALGPGGDMAV----AAPEEWVPRLRELLLRHPHALVGEFGLDRAAVVPGTRLQPGWAHQLALTEAHLRLAVELGRPVSMHCVQGYGHLQDMLRRLGPEG-------------------------------CPPKIMLHSYGGSVELVKGFIKMPG--GLGERIYFSFSDVINGRKPGQRAKLLERLAAVPAERLLLESDQNSPAGIDSG-LVDILDAVAEARGVSVEAAA 306
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A8J4ARR6_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ARR6_9CHLO) HSP 1 Score: 129 bits (324), Expect = 1.140e-30 Identity = 83/233 (35.62%), Postives = 121/233 (51.93%), Query Frame = 1
Query: 82 LKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAAALANGNAARF 777
L R A E W+ L +LL HPHA+VGE GLD+ A P TR + W QL + + + LA+ + RP S+HCV+ +G L D LR G G PPRI LHS+ GSV++ K T+L +G G+ ++F FS+ +N R +L++ LR VP R+L+E+D+ +P+ L + A+AEA+G++IE+AAA N F
Sbjct: 162 LLARMAPIPPERWMPRLRSLLTDHPHAVVGEFGLDRAAVVPGTRLQPAWSHQLALTEMHLRLASELGRPASLHCVQGYGALQDMLRTLGPEG-------------------------------CPPRIMLHSYGGSVDLIKGFTKLP--KGVGNRIYFSFSSVIN---GRARDKLLERLRAVPLERLLVESDQNSPSG-VDPGLRAILEAVAEARGITIEDAAAATTNNFLEF 357
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A2K3CQ28_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CQ28_CHLRE) HSP 1 Score: 128 bits (322), Expect = 2.190e-30 Identity = 83/218 (38.07%), Postives = 116/218 (53.21%), Query Frame = 1
Query: 97 AHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAA 747
A A E+W L LL +HPHALVGE GLD+ A P +R + WD QL + + + LAA + RPVS+HCV+ +G L D LR G G PP+I LHS+ GSV++ K TRL G G ++F FS +N R + +L+ L VP R+L+E+D+ +PA + L+ + A+AEA+GVS+E AA
Sbjct: 123 AVAAPEQWRPRLRELLLRHPHALVGEFGLDRAAVVPGSRLQPGWDHQLALTEAHLALAAELRRPVSMHCVQGYGHLQDMLRRLGPEG-------------------------------CPPKIMLHSYGGSVDLVKGFTRLPG--GLGERIYFSFSDVINGRKPGQRAKLLQRLAAVPAERLLLESDQNSPAGIDSG-LVYILEAVAEARGVSVETAA 306
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A8J4G6C9_9CHLO (Uncharacterized protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G6C9_9CHLO) HSP 1 Score: 125 bits (315), Expect = 2.400e-29 Identity = 81/233 (34.76%), Postives = 119/233 (51.07%), Query Frame = 1
Query: 82 LKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAAALANGNAARF 777
L R A E W+ L +LL HPHA+VGE GLD+ A P TR + W QL + + + LA+ + RP S+HCV+ +G L D LR G G PP+I LHS+ GSV++ + T+L +G G ++F FS+ +N R +L++ LR VP R+L+E+D+ +PA L + A+AEA+G+++EEAA N F
Sbjct: 160 LLARLAPIPPERWMPRLQSLLTAHPHAVVGEFGLDRAAVVPGTRLQPAWAHQLALTEMHLRLASELGRPASLHCVQGYGALQDMLRTLGPEG-------------------------------CPPKIMLHSYGGSVDLIRGFTKLP--KGVGDRIYFSFSSVIN---GRARDKLLERLRAVPLERLLVESDQNSPAG-VDPGLRAILEAVAEARGITVEEAAVATTNNFREF 355 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1265.1632.1 >prot_E-siliculosus-1a_F_contig1265.1632.1 ID=prot_E-siliculosus-1a_F_contig1265.1632.1|Name=mRNA_E-siliculosus-1a_F_contig1265.1632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=264bp MSSLNERRRDHAENGSGTATIFAPPWALKIRYAHARSEEWLRDLTALLEQback to top mRNA from alignment at E-siliculosus-1a_F_contig1265:20172..24213+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1265.1632.1 ID=mRNA_E-siliculosus-1a_F_contig1265.1632.1|Name=mRNA_E-siliculosus-1a_F_contig1265.1632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4042bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1265:20172..24213+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1265:20172..24213+ >mRNA_E-siliculosus-1a_F_contig1265.1632.1 ID=mRNA_E-siliculosus-1a_F_contig1265.1632.1|Name=mRNA_E-siliculosus-1a_F_contig1265.1632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1584bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1265:20172..24213+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |