mRNA_E-siliculosus-1a_F_contig12595.1597.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12595.1597.1
Unique NamemRNA_E-siliculosus-1a_F_contig12595.1597.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 2.020e-100
Identity = 152/188 (80.85%), Postives = 170/188 (90.43%), Query Frame = 3
Query:    3 AEAQGAAAAAASAPSLDGEGSQDEEFDDELATLVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQACGCQTPLPQWEKSDPTGVTTCGRQQAHIISGVSIQHVLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 566
            AE QGAAAAAAS PSLDG GSQD+EFD+ELATL+ADEPPRA KQ+PL+KALL+TAV N  GVR+LL+EQAVTAA+ CGC+TP P W+KSDP  +TTCGRQQAHII+GVSIQHVLDRQKERDS+GDNV YVLARTVR  LQYLAA+EIGA+GQGNQCRRG+CFA AMGMF GKG EGIPRDVVLALLR+
Sbjct:   36 AEGQGAAAAAASTPSLDGNGSQDDEFDEELATLLADEPPRAVKQTPLSKALLQTAVGNSGGVRALLEEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223          
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 1.110e-78
Identity = 127/158 (80.38%), Postives = 133/158 (84.18%), Query Frame = 3
Query:   45 SLDGEGSQDEEFDDELATLVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQACGCQTPLPQWEKSDPTGVTTCGRQQAHIISGVSIQHVLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGK 518
            SLDGEGSQDEE DDELATLVADEPPRAAKQSPLA ALLKTA+ENP GVRSLL+EQA TAAQ CGCQTPL QW+K D        RQQAHII+GVSIQHVLDRQK RDSEGDNVPYVLARTVRSNLQYLAA+EIGATGQGNQCRRG        MFC +
Sbjct:   17 SLDGEGSQDEELDDELATLVADEPPRAAKQSPLATALLKTALENPGGVRSLLREQAETAAQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG--------MFCSR 166          
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5K9U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U2_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 7.340e-54
Identity = 97/138 (70.29%), Postives = 111/138 (80.43%), Query Frame = 3
Query:   36 SAPSLDGEGSQDEEFDDELATLVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQACGCQTPLPQWEKSDPTGVTTCGRQQAHIISGVSIQHVLDRQKERDSEGDNVPYVLARTVRSNLQYLA-AREIG 446
            S PSLDG+GSQD+EFD+ELATL+ADEPPRAA Q+PLAKALL+    NP GVR+LLKEQAVTAA+ CGC+TP P W+KSDP  +TTCGRQQAHII+GVSIQ       ERDS+GDNV YVLARTVRS    L  AR+ G
Sbjct:   46 STPSLDGDGSQDDEFDEELATLLADEPPRAANQTPLAKALLQA---NPGGVRALLKEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQ-------ERDSQGDNVSYVLARTVRSKPTVLGGARDWG 173          
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5K0E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E2_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 6.260e-50
Identity = 90/126 (71.43%), Postives = 103/126 (81.75%), Query Frame = 3
Query:    3 AEAQGAAAAAASAPSLDGEGSQDEEFDDELATLVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQACGCQTPLPQWEKSDPTGVTTCGRQQAHIISGVSIQHVLDRQKERDSEGDN 380
            AE QGAAAAAAS PSLDG GSQD+EFD+ELATL+ADEPPRAAKQ+PLAKALL+ AV NP GVR+LLKEQAVTAA+ C C+TP P W  SDP  +TTCGRQQAHII+GVSIQ V    + R+ +  N
Sbjct:   36 AEGQGAAAAAASTPSLDGNGSQDDEFDEELATLLADEPPRAAKQTPLAKALLQAAVGNPGGVRALLKEQAVTAAKGCMCETPQPGWANSDPDRITTCGRQQAHIIAGVSIQTVGSLPRSRNVDCSN 161          
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5KIK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIK6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.850e-24
Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 MRKHREQLLLRHQHLASMARVRKTKSLTTSWPPSWQTSPRVLPSSHLWRRRC*RRPWKTRKEFVHC 198
            +RK  EQ+LLRHQHLASMA V KT S   SWPPSWQTSPRVLPS  LWRRRC RRPW+TR E  HC
Sbjct:   35 LRKDEEQVLLRHQHLASMAMVCKTTSSMKSWPPSWQTSPRVLPSRRLWRRRCCRRPWETRVESGHC 100          
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.430e-23
Identity = 63/179 (35.20%), Postives = 97/179 (54.19%), Query Frame = 3
Query:   57 EGSQDEEFDD-------ELATLVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQACGCQ--TPLPQWEKSDPTGVTTCGRQQAHIISGVSIQHVLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 566
            EG +D  FDD       EL  L+   PP +   +P+   + + A+++PE +R  ++E A   A+  GCQ   PL  W K D    TTCGR QA ++S    + VLDRQ   D +     Y LA+ VR+ + Y  + ++   G+GNQC  G C  AA+ +F G+ ++GIP ++V A+ + 
Sbjct:   11 EGGEDTLFDDPVEVVGEELEGLLRLSPP-STSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTW-KQDREAATTCGRLQAGVLS----RKVLDRQMTHDGDPG---YCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCKE 180          
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: D7G7F1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F1_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 4.170e-18
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1
Query:  337 MCSTVRRRGTAKATMCRTCLRARSGVTYSTWRRERLGLLGKETNAGA 477
            M STVRRRGTAKATMCRTCLRAR G  Y+TWRR+RLGLLGKETNAGA
Sbjct:    1 MSSTVRRRGTAKATMCRTCLRARLGAIYNTWRRKRLGLLGKETNAGA 47          
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.030e-17
Identity = 54/159 (33.96%), Postives = 88/159 (55.35%), Query Frame = 3
Query:   99 LVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQA-CGCQTPLPQWEKSDPTGVTTCGRQQAH--IISGVSIQHVLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 566
            LV  EPP  + +   A A+L+ A  +PE + S ++++A   A+  C    P   W++   T  T+CG  Q+   +++ V +Q V  R K      D+  Y +A+ VR+   Y  A+++G  G+GNQ + GEC  AA  +F G G +G+P +VV A+L+H
Sbjct:   31 LVRVEPPSLSSED-TAVAILQHARLHPETIGSFIQKKAEELAEGVCDHHQPPVSWQEDPST--TSCGLHQSASAVLAAVRLQDVFTRYK------DDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAMLQH 180          
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.200e-9
Identity = 30/87 (34.48%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  309 HIISGVSIQHVLDRQKERDSEGDNVP-YVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 566
            H ++  ++  V  RQ++  +   + P Y +A+ VR+ + Y  A+++G  G+GNQ + GEC  AA  +F G G +G+P +VV A+L++
Sbjct:    3 HRLTTTTVPCVTPRQQDVCTRYKDDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE2.020e-10080.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI1.110e-7880.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9U2_9PHAE7.340e-5470.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0E2_9PHAE6.260e-5071.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIK6_9PHAE2.850e-2474.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG3_9PHAE9.430e-2335.20Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G7F1_ECTSI4.170e-1887.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG83_9PHAE3.030e-1733.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ8_9PHAE1.200e-934.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12595contigE-siliculosus-1a_F_contig12595:119..1460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size159
Model size566
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12595.1597.1prot_E-siliculosus-1a_F_contig12595.1597.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12595 119..277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.8657212-CDS-E-siliculosus-1a_F_contig12595:118..2771622927780.8657212-CDS-E-siliculosus-1a_F_contig12595:118..277Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12595 119..277 +
1696318677.021083-CDS-E-siliculosus-1a_F_contig12595:118..2771696318677.021083-CDS-E-siliculosus-1a_F_contig12595:118..277Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12595 119..277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.8910635-UTR-E-siliculosus-1a_F_contig12595:277..4531622927780.8910635-UTR-E-siliculosus-1a_F_contig12595:277..453Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12595 278..453 +
1696318677.0360198-UTR-E-siliculosus-1a_F_contig12595:277..4531696318677.0360198-UTR-E-siliculosus-1a_F_contig12595:277..453Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12595 278..453 +
1622927780.904917-UTR-E-siliculosus-1a_F_contig12595:1229..14601622927780.904917-UTR-E-siliculosus-1a_F_contig12595:1229..1460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12595 1230..1460 +
1696318677.0496762-UTR-E-siliculosus-1a_F_contig12595:1229..14601696318677.0496762-UTR-E-siliculosus-1a_F_contig12595:1229..1460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12595 1230..1460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12595.1597.1

>prot_E-siliculosus-1a_F_contig12595.1597.1 ID=prot_E-siliculosus-1a_F_contig12595.1597.1|Name=mRNA_E-siliculosus-1a_F_contig12595.1597.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp
MRKHREQLLLRHQHLASMARVRKTKSLTTSWPPSWQTSPRVLPSSHLWRR
RC*
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mRNA from alignment at E-siliculosus-1a_F_contig12595:119..1460+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12595.1597.1 ID=mRNA_E-siliculosus-1a_F_contig12595.1597.1|Name=mRNA_E-siliculosus-1a_F_contig12595.1597.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12595:119..1460+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGAAGCACAGGGAGCAGCTGCTGCTGCGGCATCAGCACCTAGCCTC GATGGCGAGGGTTCGCAAGACGAAGAGTTTGACGACGAGCTGGCCACCCT CGTGGCAGACGAGCCCCCGCGTGCTGCCAAGCAGTCACCTCTGGCGAAGG CGCTGCTGAAGACGGCCGTGGAAAACCCGGAAGGAGTTCGTTCATTGCTG AAGGAGCAAGCGGTGACGGCCGCGCAGGCGTGCGGGTGCCAGACACCCCT TCCGCAATGGGAGAAAAGCGACCCAACTGGGGTCACAACCTGTGGGCGCC AGCAGGCCCATATCATCTCTGGGGTGTCTATCCAGGTGTGTAGTGGCTGT CTTCTTTCATCAGAGGCCTTGTCACAGACGGTGGGCAGCCTCCCGTCAAG CCGATACGTGGATTGTACAGCAACCAACATGTAGTTATTATTTGTACCTA CAAACCGCCCTGTTCCTCTCGTACGTACTGGCTCTATCCCGGCCCACAGA AGCAGTCTATGTTGAAGCTCTAACACGAACGAAACGCAGGAATATTCTGT TGCACACAGCAGCCACATGGATGCAGAGTTAGGAGTGGTACGGTGCTTGG CCCGAACGTACATGCCCTCTCCAAGACCAAAGAAAGTCTGCAAAATCAAA GAGAGCGTACAAAAAAAAAACGCACCGTGTCACGCAAGATATCACCCCCC CCCCCGCACAAACGTTTGGCACCCACACCCCGCACCAAATTTCAGACGTT CACTCCCACACTGGGCCCGAAGAGGTGTGTTGTCCCAACAAAACGTTTCG GGAAGTGGTCCACGAGAGCGTTACAACTCCGACGTTTTATGCCTCGCCAA TGTGCCTTTATTGAGGGCATTGAAGAACTGGAAATTACTATCGTGGGGGG GGGTGATATCTTATACCAAACGATGACATCGTTGCTTCACCTCAGGGTGC ACGATGAACCGACGGTACGCACGGTGGGTGAAGGTAATTAGACGGATTAG GCGGTGTCAATCACCCTGCCACCTTGCTCAGGGGGAGCGGTTACTTGTAT TTGTTGAAACTCACCATAGTTTCTGCCCCCCCCCCACCCCTCTCTCCGCG CCCCCTCGCAGCATGTGCTCGACCGTCAGAAGGAGAGGGACAGCGAAGGC GACAATGTGCCGTACGTGCTTGCGCGCACGGTCAGGAGTAACCTACAGTA CTTGGCGGCGCGAGAGATTGGGGCTACTGGGCAAGGAAACCAATGCCGGC GCGGGGAATGTTTTGCAGCCGCTATGGGCATGTTTTGCGGCAAGGGGAAG GAGGGCATTCCTCGTGATGTCGTTCTAGCGTTGCTGAGGCAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12595:119..1460+

>mRNA_E-siliculosus-1a_F_contig12595.1597.1 ID=mRNA_E-siliculosus-1a_F_contig12595.1597.1|Name=mRNA_E-siliculosus-1a_F_contig12595.1597.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12595:119..1460+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGAAGCACAGGGAGCAGCTGCTGCTGCGGCATCAGCACCTAGCCTC
GATGGCGAGGGTTCGCAAGACGAAGAGTTTGACGACGAGCTGGCCACCCT
CGTGGCAGACGAGCCCCCGCGTGCTGCCAAGCAGTCACCTCTGGCGAAGG
CGCTGCTGAATGCGGAAGCACAGGGAGCAGCTGCTGCTGCGGCATCAGCA
CCTAGCCTCGATGGCGAGGGTTCGCAAGACGAAGAGTTTGACGACGAGCT
GGCCACCCTCGTGGCAGACGAGCCCCCGCGTGCTGCCAAGCAGTCACCTC
TGGCGAAGGCGCTGCTGA
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