mRNA_E-siliculosus-1a_F_contig12595.1597.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE) HSP 1 Score: 298 bits (762), Expect = 2.020e-100 Identity = 152/188 (80.85%), Postives = 170/188 (90.43%), Query Frame = 3
Query: 3 AEAQGAAAAAASAPSLDGEGSQDEEFDDELATLVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQACGCQTPLPQWEKSDPTGVTTCGRQQAHIISGVSIQHVLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 566
AE QGAAAAAAS PSLDG GSQD+EFD+ELATL+ADEPPRA KQ+PL+KALL+TAV N GVR+LL+EQAVTAA+ CGC+TP P W+KSDP +TTCGRQQAHII+GVSIQHVLDRQKERDS+GDNV YVLARTVR LQYLAA+EIGA+GQGNQCRRG+CFA AMGMF GKG EGIPRDVVLALLR+
Sbjct: 36 AEGQGAAAAAASTPSLDGNGSQDDEFDEELATLLADEPPRAVKQTPLSKALLQTAVGNSGGVRALLEEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI) HSP 1 Score: 241 bits (615), Expect = 1.110e-78 Identity = 127/158 (80.38%), Postives = 133/158 (84.18%), Query Frame = 3
Query: 45 SLDGEGSQDEEFDDELATLVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQACGCQTPLPQWEKSDPTGVTTCGRQQAHIISGVSIQHVLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGK 518
SLDGEGSQDEE DDELATLVADEPPRAAKQSPLA ALLKTA+ENP GVRSLL+EQA TAAQ CGCQTPL QW+K D RQQAHII+GVSIQHVLDRQK RDSEGDNVPYVLARTVRSNLQYLAA+EIGATGQGNQCRRG MFC +
Sbjct: 17 SLDGEGSQDEELDDELATLVADEPPRAAKQSPLATALLKTALENPGGVRSLLREQAETAAQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG--------MFCSR 166
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5K9U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U2_9PHAE) HSP 1 Score: 178 bits (451), Expect = 7.340e-54 Identity = 97/138 (70.29%), Postives = 111/138 (80.43%), Query Frame = 3
Query: 36 SAPSLDGEGSQDEEFDDELATLVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQACGCQTPLPQWEKSDPTGVTTCGRQQAHIISGVSIQHVLDRQKERDSEGDNVPYVLARTVRSNLQYLA-AREIG 446
S PSLDG+GSQD+EFD+ELATL+ADEPPRAA Q+PLAKALL+ NP GVR+LLKEQAVTAA+ CGC+TP P W+KSDP +TTCGRQQAHII+GVSIQ ERDS+GDNV YVLARTVRS L AR+ G
Sbjct: 46 STPSLDGDGSQDDEFDEELATLLADEPPRAANQTPLAKALLQA---NPGGVRALLKEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQ-------ERDSQGDNVSYVLARTVRSKPTVLGGARDWG 173
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5K0E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E2_9PHAE) HSP 1 Score: 167 bits (424), Expect = 6.260e-50 Identity = 90/126 (71.43%), Postives = 103/126 (81.75%), Query Frame = 3
Query: 3 AEAQGAAAAAASAPSLDGEGSQDEEFDDELATLVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQACGCQTPLPQWEKSDPTGVTTCGRQQAHIISGVSIQHVLDRQKERDSEGDN 380
AE QGAAAAAAS PSLDG GSQD+EFD+ELATL+ADEPPRAAKQ+PLAKALL+ AV NP GVR+LLKEQAVTAA+ C C+TP P W SDP +TTCGRQQAHII+GVSIQ V + R+ + N
Sbjct: 36 AEGQGAAAAAASTPSLDGNGSQDDEFDEELATLLADEPPRAAKQTPLAKALLQAAVGNPGGVRALLKEQAVTAAKGCMCETPQPGWANSDPDRITTCGRQQAHIIAGVSIQTVGSLPRSRNVDCSN 161
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5KIK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIK6_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.850e-24 Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = 1
Query: 1 MRKHREQLLLRHQHLASMARVRKTKSLTTSWPPSWQTSPRVLPSSHLWRRRC*RRPWKTRKEFVHC 198
+RK EQ+LLRHQHLASMA V KT S SWPPSWQTSPRVLPS LWRRRC RRPW+TR E HC
Sbjct: 35 LRKDEEQVLLRHQHLASMAMVCKTTSSMKSWPPSWQTSPRVLPSRRLWRRRCCRRPWETRVESGHC 100
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE) HSP 1 Score: 100 bits (248), Expect = 9.430e-23 Identity = 63/179 (35.20%), Postives = 97/179 (54.19%), Query Frame = 3
Query: 57 EGSQDEEFDD-------ELATLVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQACGCQ--TPLPQWEKSDPTGVTTCGRQQAHIISGVSIQHVLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 566
EG +D FDD EL L+ PP + +P+ + + A+++PE +R ++E A A+ GCQ PL W K D TTCGR QA ++S + VLDRQ D + Y LA+ VR+ + Y + ++ G+GNQC G C AA+ +F G+ ++GIP ++V A+ +
Sbjct: 11 EGGEDTLFDDPVEVVGEELEGLLRLSPP-STSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTW-KQDREAATTCGRLQAGVLS----RKVLDRQMTHDGDPG---YCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCKE 180
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: D7G7F1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F1_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 4.170e-18 Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1
Query: 337 MCSTVRRRGTAKATMCRTCLRARSGVTYSTWRRERLGLLGKETNAGA 477
M STVRRRGTAKATMCRTCLRAR G Y+TWRR+RLGLLGKETNAGA
Sbjct: 1 MSSTVRRRGTAKATMCRTCLRARLGAIYNTWRRKRLGLLGKETNAGA 47
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.030e-17 Identity = 54/159 (33.96%), Postives = 88/159 (55.35%), Query Frame = 3
Query: 99 LVADEPPRAAKQSPLAKALLKTAVENPEGVRSLLKEQAVTAAQA-CGCQTPLPQWEKSDPTGVTTCGRQQAH--IISGVSIQHVLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 566
LV EPP + + A A+L+ A +PE + S ++++A A+ C P W++ T T+CG Q+ +++ V +Q V R K D+ Y +A+ VR+ Y A+++G G+GNQ + GEC AA +F G G +G+P +VV A+L+H
Sbjct: 31 LVRVEPPSLSSED-TAVAILQHARLHPETIGSFIQKKAEELAEGVCDHHQPPVSWQEDPST--TSCGLHQSASAVLAAVRLQDVFTRYK------DDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAMLQH 180
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 1.200e-9 Identity = 30/87 (34.48%), Postives = 54/87 (62.07%), Query Frame = 3
Query: 309 HIISGVSIQHVLDRQKERDSEGDNVP-YVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 566
H ++ ++ V RQ++ + + P Y +A+ VR+ + Y A+++G G+GNQ + GEC AA +F G G +G+P +VV A+L++
Sbjct: 3 HRLTTTTVPCVTPRQQDVCTRYKDDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig12595.1597.1 >prot_E-siliculosus-1a_F_contig12595.1597.1 ID=prot_E-siliculosus-1a_F_contig12595.1597.1|Name=mRNA_E-siliculosus-1a_F_contig12595.1597.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp MRKHREQLLLRHQHLASMARVRKTKSLTTSWPPSWQTSPRVLPSSHLWRRback to top mRNA from alignment at E-siliculosus-1a_F_contig12595:119..1460+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig12595.1597.1 ID=mRNA_E-siliculosus-1a_F_contig12595.1597.1|Name=mRNA_E-siliculosus-1a_F_contig12595.1597.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12595:119..1460+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12595:119..1460+ >mRNA_E-siliculosus-1a_F_contig12595.1597.1 ID=mRNA_E-siliculosus-1a_F_contig12595.1597.1|Name=mRNA_E-siliculosus-1a_F_contig12595.1597.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12595:119..1460+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |