prot_E-siliculosus-1a_F_contig12595.1597.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig12595.1597.1
Unique Nameprot_E-siliculosus-1a_F_contig12595.1597.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length53
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Match: A0A6H5KIK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIK6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.110e-19
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0 
Query:    1 MRKHREQLLLRHQHLASMARVRKTKSLTTSWPPSWQTSPRVLPSSHLWRRRC 52
            +RK  EQ+LLRHQHLASMA V KT S   SWPPSWQTSPRVLPS  LWRRRC
Sbjct:   35 LRKDEEQVLLRHQHLASMAMVCKTTSSMKSWPPSWQTSPRVLPSRRLWRRRC 86
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12595.1597.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KIK6_9PHAE2.110e-1976.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12595contigE-siliculosus-1a_F_contig12595:119..277 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12595.1597.1mRNA_E-siliculosus-1a_F_contig12595.1597.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig12595 119..1460 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig12595.1597.1 ID=prot_E-siliculosus-1a_F_contig12595.1597.1|Name=mRNA_E-siliculosus-1a_F_contig12595.1597.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp
MRKHREQLLLRHQHLASMARVRKTKSLTTSWPPSWQTSPRVLPSSHLWRR
RC*
back to top