prot_E-siliculosus-1a_F_contig1258.1592.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1258.1592.1
Unique Nameprot_E-siliculosus-1a_F_contig1258.1592.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length621
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1258.1592.1 vs. uniprot
Match: A0A6H5L552_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L552_9PHAE)

HSP 1 Score: 795 bits (2053), Expect = 1.150e-282
Identity = 484/602 (80.40%), Postives = 505/602 (83.89%), Query Frame = 0
Query:    1 MSMIGGGWVYCSRKMEATRVLCEPGGCKIEDLRAGDTTVLIIPRHKVVRAELVQVKNEEVVDPIKLRRSAQTKLGHSYNVVYLEPDSEDDDDESYDSFXXXXXXXXXXXXXXXFSEDDDD---YEMAVMAQRANERLENAIPPAGGPSGTKAAMASF--RYAAEARREAELARKDAQRAKWAKDREGRGLPPIKEPDEQQRQKTTAARGGDFDDEERFPGDATTLREKNRQEIRNMEGARGMTAVEHRERSQQAFEEAVKAYKEMQRRDQHMQQMGDNLHDRAKPQPGNDDNNNKLSPDDPDNNPPAKAGRPPLERGQARKDLHVNEGGAXXXXXXXXXXXXXXXXXTSKSSVRGLEEFDNQGRRRLSPSPPRDQDKGEEED-----QGLDEGGRLESFGDAVQHVGAAGSTRKLLSWKKRVKEVVPKPSKPTKEELAEDASKGRETHRQGHGHHQNRARKVAQPTGPEERVDGSLDGEPKPKTKHHHKAFHHSEDVPQADRXXXXXXXXXTPGEKKIEHGWRHEHRQWHHREELKKLGTPFSLGRTVARKRKEAIDSYVSRRVSTLDFTDSKKWRAGGLWLIIVGCISISFCIVIGNFQPR 592
            MSMI GGWVYCSRKME+T VLCEPGGCKIEDLRAG+TTVL+IPRHK+VR ELV+VKN EVVDP+KLRRSAQ KLGHSYNVVYLEPDSEDDDDESYDS XXXXXXXXXXXXXXX          Y+MAVMAQRA ERLENAIPPAGGPSG KAAMASF  RYAAEARREAEL RKDAQRAKWAKDRE RGLPPIKEPDEQQRQK TAARGGDFDDEERFPGDA T+REKNR+EIRNME ARGMTA EHRE SQQAFEEA KA+KEMQRRDQ M+QMG+NLH RAKPQP  D+NN KLSPDDPDNNPPA AGRPPLERGQA+KDL VNEG A XXXXXXXXXXXXXXXX                                        QGLDEGGRL+ FGD VQHVGAAGS RKLLS K  VK+VVPKPSKPTKEELAEDASK RETHRQGHGHHQ RARKVAQPTGPEER DGSLDGEP+PKTKHHHKAFHH EDVPQADR XXXXXXXX PG+KKIEHGWRH        EELKKLGTPFSLGRTVARKRKEAID+YVSRRVSTLDFTDSKKWRAGGLWLIIVGC+SI+FCIVIGNFQPR
Sbjct:   55 MSMIFGGWVYCSRKMESTWVLCEPGGCKIEDLRAGETTVLMIPRHKMVRGELVRVKNGEVVDPVKLRRSAQRKLGHSYNVVYLEPDSEDDDDESYDSXXXXXXXXXXXXXXXXXXXXXXXXXXYDMAVMAQRAKERLENAIPPAGGPSGAKAAMASFPNRYAAEARREAELVRKDAQRAKWAKDREERGLPPIKEPDEQQRQKATAARGGDFDDEERFPGDAATMREKNRREIRNMEEARGMTAEEHRELSQQAFEEAAKAHKEMQRRDQQMRQMGNNLHYRAKPQPDTDNNNKKLSPDDPDNNPPA-AGRPPLERGQAQKDLDVNEGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLDEGGRLDGFGDVVQHVGAAGSRRKLLSRKNPVKQVVPKPSKPTKEELAEDASKSRETHRQGHGHHQKRARKVAQPTGPEERADGSLDGEPRPKTKHHHKAFHHKEDVPQADRHXXXXXXXXRPGDKKIEHGWRHXXXXXXXXEELKKLGTPFSLGRTVARKRKEAIDNYVSRRVSTLDFTDSKKWRAGGLWLIIVGCMSIAFCIVIGNFQPR 655          
BLAST of mRNA_E-siliculosus-1a_F_contig1258.1592.1 vs. uniprot
Match: D7FJ58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ58_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 4.000e-121
Identity = 211/303 (69.64%), Postives = 224/303 (73.93%), Query Frame = 0
Query:    1 MSMIGGGWVYCSRKMEATRVLCEPGGCKIEDLRAGDTTVLIIPRHKVVRAELVQVKNEEVVDPIKLRRSAQTKLGHSYNVVYLEPDSEDDDDESYDSFXXXXXXXXXXXXXXXFSEDDDDYEMAVMAQRANERLENAIPPAGGPSGTKAAMASFRYAAEARREAELARKDAQRAKWAKDREGRGLPPIKEPDEQQRQKTTAARGGDFDDEERFPGDATTLREKNRQEIRNMEGARGMTAVEHRERSQQAFEEAVKAYKEMQRRDQHMQQMGDNLHDRAKPQPGNDDNNN--KLSPDDPDNNPP 301
            MSMIGGGWVYCSRKME+TRVLCEPGGCKIEDLRAG+TTVL+IPRHK+VR ELV+VKN EVVDPIKLRRSAQ KLGHSYNVVYLEPDSED                                                      PS         RYAAEARREAELARKDAQRAKWAKDRE RGLPPIKEPDEQ+RQ+  AARGGDFDDEERFPGDA T+REKNR+EIRNME ARGMTA EHRER QQAFEEA KA+KEMQRRDQ M+QMG+NLHDRAKPQPG D+NNN  KLSPDDPDN PP
Sbjct:    8 MSMIGGGWVYCSRKMESTRVLCEPGGCKIEDLRAGETTVLMIPRHKMVRGELVRVKNGEVVDPIKLRRSAQRKLGHSYNVVYLEPDSED------------------------------------------------------PS---------RYAAEARREAELARKDAQRAKWAKDREERGLPPIKEPDEQRRQEAKAARGGDFDDEERFPGDAATMREKNRREIRNMEEARGMTAEEHRERGQQAFEEAAKAHKEMQRRDQQMRQMGNNLHDRAKPQPGTDNNNNNKKLSPDDPDNIPP 247          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1258.1592.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L552_9PHAE1.150e-28280.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ58_ECTSI4.000e-12169.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 157..177
NoneNo IPR availableCOILSCoilCoilcoord: 243..263
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..568
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 590..620
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 569..589
NoneNo IPR availableTMHMMTMhelixcoord: 567..589

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1258contigE-siliculosus-1a_F_contig1258:2402..20925 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1258.1592.1mRNA_E-siliculosus-1a_F_contig1258.1592.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1258 2396..21312 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1258.1592.1 ID=prot_E-siliculosus-1a_F_contig1258.1592.1|Name=mRNA_E-siliculosus-1a_F_contig1258.1592.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=621bp
MSMIGGGWVYCSRKMEATRVLCEPGGCKIEDLRAGDTTVLIIPRHKVVRA
ELVQVKNEEVVDPIKLRRSAQTKLGHSYNVVYLEPDSEDDDDESYDSFED
DDDSYDSYDGDDDFSEDDDDYEMAVMAQRANERLENAIPPAGGPSGTKAA
MASFRYAAEARREAELARKDAQRAKWAKDREGRGLPPIKEPDEQQRQKTT
AARGGDFDDEERFPGDATTLREKNRQEIRNMEGARGMTAVEHRERSQQAF
EEAVKAYKEMQRRDQHMQQMGDNLHDRAKPQPGNDDNNNKLSPDDPDNNP
PAKAGRPPLERGQARKDLHVNEGGAGGGGAAAGEDELRKGGGTSKSSVRG
LEEFDNQGRRRLSPSPPRDQDKGEEEDQGLDEGGRLESFGDAVQHVGAAG
STRKLLSWKKRVKEVVPKPSKPTKEELAEDASKGRETHRQGHGHHQNRAR
KVAQPTGPEERVDGSLDGEPKPKTKHHHKAFHHSEDVPQADRRHVHPGFH
HTPGEKKIEHGWRHEHRQWHHREELKKLGTPFSLGRTVARKRKEAIDSYV
SRRVSTLDFTDSKKWRAGGLWLIIVGCISISFCIVIGNFQPRHSADLGGR
YTKRGVDTTIAITSRVPGRT*
back to top