mRNA_E-siliculosus-1a_F_contig1258.1592.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1258.1592.1 vs. uniprot
Match: A0A6H5L552_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L552_9PHAE) HSP 1 Score: 798 bits (2062), Expect = 6.440e-282 Identity = 486/604 (80.46%), Postives = 507/604 (83.94%), Query Frame = 1
Query: 1 LSMSMIGGGWVYCSRKMEATRVLCEPGGCKIEDLRAGDTTVLIIPRHKVVRAELVQVKNEEVVDPIKLRRSAQTKLGHSYNVVYLEPDSEDDDDESYDSFXXXXXXXXXXXXXXXFSEDDDD---YEMAVMAQRANERLENAIPPAGGPSGTKAAMASF--RYAAEARREAELARKDAQRAKWAKDREGRGLPPIKEPDEQQRQKTTAARGGDFDDEERFPGDATTLREKNRQEIRNMEGARGMTAVEHRERSQQAFEEAVKAYKEMQRRDQHMQQMGDNLHDRAKPQPGNDDNNNKLSPDDPDNNPPAKAGRPPLERGQARKDLHVNEGGAXXXXXXXXXXXXXXXXXTSKSSVRGLEEFDNQGRRRLSPSPPRDQDKGEEED-----QGLDEGGRLESFGDAVQHVGAAGSTRKLLSWKKRVKEVVPKPSKPTKEELAEDASKGRETHRQGHGHHQNRARKVAQPTGPEERVDGSLDGEPKPKTKHHHKAFHHSEDVPQADRXXXXXXXXXTPGEKKIEHGWRHEHRQWHHREELKKLGTPFSLGRTVARKRKEAIDSYVSRRVSTLDFTDSKKWRAGGLWLIIVGCISISFCIVIGNFQPR 1782
LSMSMI GGWVYCSRKME+T VLCEPGGCKIEDLRAG+TTVL+IPRHK+VR ELV+VKN EVVDP+KLRRSAQ KLGHSYNVVYLEPDSEDDDDESYDS XXXXXXXXXXXXXXX Y+MAVMAQRA ERLENAIPPAGGPSG KAAMASF RYAAEARREAEL RKDAQRAKWAKDRE RGLPPIKEPDEQQRQK TAARGGDFDDEERFPGDA T+REKNR+EIRNME ARGMTA EHRE SQQAFEEA KA+KEMQRRDQ M+QMG+NLH RAKPQP D+NN KLSPDDPDNNPPA AGRPPLERGQA+KDL VNEG A XXXXXXXXXXXXXXXX QGLDEGGRL+ FGD VQHVGAAGS RKLLS K VK+VVPKPSKPTKEELAEDASK RETHRQGHGHHQ RARKVAQPTGPEER DGSLDGEP+PKTKHHHKAFHH EDVPQADR XXXXXXXX PG+KKIEHGWRH EELKKLGTPFSLGRTVARKRKEAID+YVSRRVSTLDFTDSKKWRAGGLWLIIVGC+SI+FCIVIGNFQPR
Sbjct: 53 LSMSMIFGGWVYCSRKMESTWVLCEPGGCKIEDLRAGETTVLMIPRHKMVRGELVRVKNGEVVDPVKLRRSAQRKLGHSYNVVYLEPDSEDDDDESYDSXXXXXXXXXXXXXXXXXXXXXXXXXXYDMAVMAQRAKERLENAIPPAGGPSGAKAAMASFPNRYAAEARREAELVRKDAQRAKWAKDREERGLPPIKEPDEQQRQKATAARGGDFDDEERFPGDAATMREKNRREIRNMEEARGMTAEEHRELSQQAFEEAAKAHKEMQRRDQQMRQMGNNLHYRAKPQPDTDNNNKKLSPDDPDNNPPA-AGRPPLERGQAQKDLDVNEGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLDEGGRLDGFGDVVQHVGAAGSRRKLLSRKNPVKQVVPKPSKPTKEELAEDASKSRETHRQGHGHHQKRARKVAQPTGPEERADGSLDGEPRPKTKHHHKAFHHKEDVPQADRHXXXXXXXXRPGDKKIEHGWRHXXXXXXXXEELKKLGTPFSLGRTVARKRKEAIDNYVSRRVSTLDFTDSKKWRAGGLWLIIVGCMSIAFCIVIGNFQPR 655
BLAST of mRNA_E-siliculosus-1a_F_contig1258.1592.1 vs. uniprot
Match: D7FJ58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ58_ECTSI) HSP 1 Score: 371 bits (953), Expect = 7.410e-121 Identity = 213/305 (69.84%), Postives = 226/305 (74.10%), Query Frame = 1
Query: 1 LSMSMIGGGWVYCSRKMEATRVLCEPGGCKIEDLRAGDTTVLIIPRHKVVRAELVQVKNEEVVDPIKLRRSAQTKLGHSYNVVYLEPDSEDDDDESYDSFXXXXXXXXXXXXXXXFSEDDDDYEMAVMAQRANERLENAIPPAGGPSGTKAAMASFRYAAEARREAELARKDAQRAKWAKDREGRGLPPIKEPDEQQRQKTTAARGGDFDDEERFPGDATTLREKNRQEIRNMEGARGMTAVEHRERSQQAFEEAVKAYKEMQRRDQHMQQMGDNLHDRAKPQPGNDDNNN--KLSPDDPDNNPP 909
LSMSMIGGGWVYCSRKME+TRVLCEPGGCKIEDLRAG+TTVL+IPRHK+VR ELV+VKN EVVDPIKLRRSAQ KLGHSYNVVYLEPDSED PS RYAAEARREAELARKDAQRAKWAKDRE RGLPPIKEPDEQ+RQ+ AARGGDFDDEERFPGDA T+REKNR+EIRNME ARGMTA EHRER QQAFEEA KA+KEMQRRDQ M+QMG+NLHDRAKPQPG D+NNN KLSPDDPDN PP
Sbjct: 6 LSMSMIGGGWVYCSRKMESTRVLCEPGGCKIEDLRAGETTVLMIPRHKMVRGELVRVKNGEVVDPIKLRRSAQRKLGHSYNVVYLEPDSED------------------------------------------------------PS---------RYAAEARREAELARKDAQRAKWAKDREERGLPPIKEPDEQRRQEAKAARGGDFDDEERFPGDAATMREKNRREIRNMEEARGMTAEEHRERGQQAFEEAAKAHKEMQRRDQQMRQMGNNLHDRAKPQPGTDNNNNNKKLSPDDPDNIPP 247
BLAST of mRNA_E-siliculosus-1a_F_contig1258.1592.1 vs. uniprot
Match: D7FJ59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ59_ECTSI) HSP 1 Score: 233 bits (593), Expect = 3.540e-69 Identity = 127/142 (89.44%), Postives = 129/142 (90.85%), Query Frame = 2
Query: 1295 MPPRAGRRTDRGTATTRTGPGRWHSRRGRRREWMGLSMENRSRRRNTTTRPFTTAKTSLKRIDATCTPGSTTRRERRRLSTAGDTSTGNGITARS*RSWGPPSAWDAPSPGSARRPSTATSAGGFPL*TLPTRRSGEQGGFG 1720
MPPR GRRTDRGTATT+ GPGRWHSRR RRRE MGLSMENRSRRRNT TRPFTT KTSLKRID TCTPGSTT RE RR STAGD STG+GITARS RSWGPPSAWDAPSPGSARRPSTATSAGGFPL TLPTRRSGEQGGFG
Sbjct: 1 MPPRVGRRTDRGTATTKRGPGRWHSRRDRRRERMGLSMENRSRRRNTITRPFTTRKTSLKRIDTTCTPGSTTGRETRRSSTAGDISTGSGITARSSRSWGPPSAWDAPSPGSARRPSTATSAGGFPLWTLPTRRSGEQGGFG 142 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1258.1592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1258.1592.1 >prot_E-siliculosus-1a_F_contig1258.1592.1 ID=prot_E-siliculosus-1a_F_contig1258.1592.1|Name=mRNA_E-siliculosus-1a_F_contig1258.1592.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=621bp MSMIGGGWVYCSRKMEATRVLCEPGGCKIEDLRAGDTTVLIIPRHKVVRAback to top mRNA from alignment at E-siliculosus-1a_F_contig1258:2396..21312+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1258.1592.1 ID=mRNA_E-siliculosus-1a_F_contig1258.1592.1|Name=mRNA_E-siliculosus-1a_F_contig1258.1592.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=18917bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1258:2396..21312+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1258:2396..21312+ >mRNA_E-siliculosus-1a_F_contig1258.1592.1 ID=mRNA_E-siliculosus-1a_F_contig1258.1592.1|Name=mRNA_E-siliculosus-1a_F_contig1258.1592.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3726bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1258:2396..21312+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |