mRNA_E-siliculosus-1a_F_contig10150.159.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10150.159.1
Unique NamemRNA_E-siliculosus-1a_F_contig10150.159.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: D7FVZ4_ECTSI (Ferredoxin nitrite reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ4_ECTSI)

HSP 1 Score: 419 bits (1078), Expect = 5.570e-142
Identity = 206/212 (97.17%), Postives = 210/212 (99.06%), Query Frame = 1
Query:    1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636
            +GMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSV+RAAESIPLDMWIKQ+DTVAFCKGMLLAFRNLG RKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRR+YVG HPQKQEGKSWVCVTTPAGRLMAED
Sbjct:  251 TGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVRRAAESIPLDMWIKQNDTVAFCKGMLLAFRNLGSRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRNYVGVHPQKQEGKSWVCVTTPAGRLMAED 462          
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A2V3J4B2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4B2_9FLOR)

HSP 1 Score: 262 bits (670), Expect = 6.700e-82
Identity = 129/213 (60.56%), Postives = 161/213 (75.59%), Query Frame = 1
Query:    1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKG-VDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636
            SGMDNVRN+VGSP+AG+DPLEMVDTRQLC++INDMITD+RKG P LTNLPRK NIA+SG RDD+AHT INDIGL P AHP+T  IGFNVV+GGFFS+KR AE++P+D+W+ QSD V FC+ +LL FR+ G RK RQ  RLM+M++++GM+ FR+ +   +   +  A +  P    P E   RR+ +G HPQKQ G SWV    PAGRL   D
Sbjct:  152 SGMDNVRNLVGSPLAGIDPLEMVDTRQLCHDINDMITDSRKGRPQLTNLPRKFNIAVSGSRDDFAHTHINDIGLVPMAHPQTAHIGFNVVIGGFFSIKRDAEALPMDVWLPQSDVVRFCETVLLWFRDHGDRKNRQATRLMYMVDQLGMKTFRDQIESAMGAPLQRAVKGGPEYDQPAE---RRNVLGVHPQKQPGLSWVAACVPAGRLETAD 361          
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: R7QAL9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAL9_CHOCR)

HSP 1 Score: 259 bits (661), Expect = 4.710e-80
Identity = 130/217 (59.91%), Postives = 160/217 (73.73%), Query Frame = 1
Query:    1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVE-----YVKGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636
            SGMDNVRNMVGSPIAG+DP E+VDTR+LC  INDMIT+NR+GNPALTNLPRK NI +SG RDD+AHT IND+GL P  HP T E+GFNVV+GGFFS+KR AE+IP+D+W+   D V FC+ +L+ FR+ G RK R  +RLM+M++++ M  FRE + E     + + VD   E   A PAP     RR+ +G H QKQEG SWVC   PAGRL AED
Sbjct:  200 SGMDNVRNMVGSPIAGIDPEEIVDTRELCIAINDMITNNRRGNPALTNLPRKFNICVSGSRDDFAHTHINDVGLVPMVHPTTKEVGFNVVIGGFFSIKRNAEAIPMDVWLPYKDVVRFCETLLIWFRDNGDRKNRMSSRLMYMVDKLTMSGFREVIQEEFGSKFRRAVDGGEEY--ATPAP-----RRNVLGVHAQKQEGLSWVCGNVPAGRLTAED 409          
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A7S0D8G4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D8G4_9EUKA)

HSP 1 Score: 244 bits (623), Expect = 2.040e-74
Identity = 123/221 (55.66%), Postives = 163/221 (73.76%), Query Frame = 1
Query:    1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAA-----PAPEEA--FSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAEDVS 642
            SGMDNVRN+VG+PIAGLDP EM+DTR LC  INDMIT++ KGNPA+TNLPRK NIA+SG RDD+AHT INDIGL P  + ETGE+GFNV+VGG+FS+KR  ESIP+D+W+K  D   FC+ ML  FR+ G R  RQ+ARL+++IE+ G++KFR+TV E     D+ F  +  A     P P +   +++RD +G H QKQ+G S+V V  P GR++ ++ +
Sbjct:  181 SGMDNVRNLVGNPIAGLDPHEMIDTRPLCKSINDMITNSGKGNPAMTNLPRKFNIAVSGSRDDFAHTTINDIGLCPCPNKETGEMGFNVIVGGYFSIKRVMESIPMDLWVKPEDATDFCEVMLEVFRDNGDRGDRQKARLIWLIEKWGLDKFRDTVKE---AFDAKFPSKAGALISSQPEPWKGTTWAKRDLLGVHEQKQDGLSFVGVNVPVGRILPDEAN 398          
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A6S9KFP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KFP9_HETAK)

HSP 1 Score: 243 bits (621), Expect = 3.460e-74
Identity = 125/214 (58.41%), Postives = 154/214 (71.96%), Query Frame = 1
Query:    1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPR-KKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAEDV 639
            SGMDNVRNMVGSPIAG+DP EM+DTRQLC ++  MIT++ KG P  TNLPRK+N AISG RDDYAHT IND+G QP A+ E G++GFNVVVGG+FS+K A ESIPL+MW+     V   +  +  FR+ G R K RQ+ R+M +IE+MG+E FR  VV  +  +D A E   A P PE+ + +RD +G H QKQEG SWV V  PAGRL  EDV
Sbjct:  193 SGMDNVRNMVGSPIAGIDPHEMIDTRQLCIDMQKMITNDNKGRPEYTNLPRKMNFAISGSRDDYAHTSINDVGFQPIANAE-GKMGFNVVVGGYFSIKAAVESIPLNMWVPPEAVVPLSEAFIRYFRDNGQRVKDRQKTRMMILIEQMGVEAFRAGVVAELAKLDPAVETFEAVPEPEDVWEKRDLMGIHAQKQEGLSWVGVVVPAGRLFPEDV 405          
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A7S1TF51_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TF51_9RHOD)

HSP 1 Score: 242 bits (617), Expect = 1.160e-73
Identity = 117/212 (55.19%), Postives = 151/212 (71.23%), Query Frame = 1
Query:    1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636
            +GMDNVRN+VGSPIAG+DP E+ DTR+LC  I+DMIT+NR GNP  +NLPRK NI +SG RDD+AHT IND+G  P  H ETGEIGFNVVVGG FS+KR   S+PL++WI  S+ V FC+ +L  FR+ G R  RQ AR M+++++ G++  RE V++ +     + E QP +   EE F RRD +G HPQKQEG  W+ V  P GR+ A D
Sbjct:  185 TGMDNVRNLVGSPIAGIDPEELFDTRELCANISDMITNNRAGNPQFSNLPRKFNICVSGSRDDFAHTHINDLGFIPVPHRETGEIGFNVVVGGLFSIKRNEMSVPLNLWIHPSNVVEFCRAVLTVFRDHGARVSRQSARFMYLVDQWGVDTLRERVLQAMAVPVDSIEAQPES---EEVFHRRDVLGVHPQKQEGLFWLGVNVPVGRMSAHD 393          
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A1X6P1I5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1I5_PORUM)

HSP 1 Score: 238 bits (608), Expect = 4.510e-72
Identity = 123/215 (57.21%), Postives = 153/215 (71.16%), Query Frame = 1
Query:    1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAA-PAPE--EAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636
            +GMD+VRNMVGSPIAG+DP EM+DTR+LC E+NDMIT+ RKGNP  TNLPRK NI +SG RDD+AHT INDIGL P  + + G +GFNVVVGG FS+KR AE++P+D W+  +    FCK +L  FR+ G RK RQ+ RLM+MI++ G +  R+ VVE++ G   A    PA  P PE    + RRD  G H QKQEG SWV    PAGRL A+D
Sbjct:  213 AGMDSVRNMVGSPIAGIDPHEMIDTRELCTELNDMITNFRKGNPEFTNLPRKFNICVSGSRDDFAHTHINDIGLVPMVNAD-GVVGFNVVVGGMFSIKRDAEAVPMDAWLTPAQVTPFCKALLEVFRDQGDRKIRQKTRLMYMIDQWGADGLRDRVVEHMGGTPFA----PAVIPGPEYDTPWPRRDIQGVHAQKQEGLSWVGCNVPAGRLTADD 422          
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: Q7XYQ0_BIGNA (Ferredoxin nitrite reductase n=1 Tax=Bigelowiella natans TaxID=227086 RepID=Q7XYQ0_BIGNA)

HSP 1 Score: 238 bits (606), Expect = 2.360e-71
Identity = 119/225 (52.89%), Postives = 159/225 (70.67%), Query Frame = 1
Query:    1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVK--------GVDSAFEPQPAAPA-----PEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636
            SGMDNVRN+VGSPIAG+DP E+VDTR +  +I+ MIT++ KGNP L NLPRK NIA+SG RDD+AHT INDIGL+P  + E+GE+GFNV+VGG+FS+KR  ESIP+D+WIK  D   FC+ +LL FR+ G R  RQ+ARL+++IE+MGME FR+ + +           G     +P+P A A     P +   +RD +  H QKQEG SWV +  PAGR++ ++
Sbjct:  233 SGMDNVRNLVGSPIAGIDPEELVDTRDIAKDIDAMITNDGKGNPKLANLPRKFNIAVSGSRDDFAHTSINDIGLRPCPNKESGEMGFNVIVGGYFSIKRVMESIPMDIWIKAEDAARFCEAVLLYFRDNGSRGDRQKARLIWLIEDMGMEGFRQAISDKYDEMFPKKKGGAAIPAQPEPWAVAAGTNTPTQPHKKRDILRVHSQKQEGLSWVGINVPAGRILPDE 457          
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A8J5XYI8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYI8_DIALT)

HSP 1 Score: 234 bits (598), Expect = 1.600e-70
Identity = 121/216 (56.02%), Postives = 154/216 (71.30%), Query Frame = 1
Query:    1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPET-GEIGFNVVVGGFFSVKRAAESIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYV--KGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAEDV 639
            SG+DNVRN+VGSPIAGLDP E+VDTR +C +IN  IT   +GNP   NLPRK NIA+SG RDD++HT INDIGLQ   HP+   E GFN+V+GG+FS+KR AESIP+  W+   D  AF   +L  FR+ G R+ RQ+ RLM+++EE G++ FR  V E +  +GVD+    + AAP P +AFSRRD +G H Q+QEGKSWV VT P GRL   +V
Sbjct:  210 SGLDNVRNLVGSPIAGLDPHELVDTRPVCAQINSDITGAFRGNPEWANLPRKFNIAVSGSRDDFSHTTINDIGLQAAVHPDCPSEPGFNIVLGGYFSIKRVAESIPMGAWVSARDAPAFSLAVLEVFRDYGRREDRQKTRLMWLLEERGLDWFRAMVNEILARRGVDAL---RAAAPPPADAFSRRDLLGVHTQRQEGKSWVGVTVPVGRLSVGEV 422          
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Match: A0A1E7FE99_9STRA (Ferredoxin-nitrite reductase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE99_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.630e-69
Identity = 119/218 (54.59%), Postives = 150/218 (68.81%), Query Frame = 1
Query:    1 SGMDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMIT----DNRKGNPALTNLPRKINIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAESIPLDMWIK--QSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKFRETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVTTPAGRLMAED 636
            S +D+VRNMVGSP+AG+D  E+VDTR LCN +ND+I+       +GNP   NLPRK NIAISG RDD+AHT INDIGLQP  H ETGE+GFNVV+GGF S+KR AES+   MWIK  +   V FC+ +L  FR+   RK RQ+ARLM+++E+ G+E F++ V+  VK  D   E     P P E F RR+ +G HPQKQ GK  V +  PAGRL A +
Sbjct:  152 SALDSVRNMVGSPLAGIDDHELVDTRVLCNAVNDLISMDPETETRGNPQWANLPRKFNIAISGSRDDFAHTHINDIGLQPCVHAETGEMGFNVVLGGFMSIKRVAESVDSGMWIKADRESVVTFCEAILRIFRDESERKDRQKARLMWLVEKYGVEDFKKAVIAEVKSYDRGVEIFDEQPRPTEKFERRELLGVHPQKQVGKVRVGIMVPAGRLSATE 369          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10150.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVZ4_ECTSI5.570e-14297.17Ferredoxin nitrite reductase n=2 Tax=Ectocarpus Ta... [more]
A0A2V3J4B2_9FLOR6.700e-8260.56Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QAL9_CHOCR4.710e-8059.91Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0D8G4_9EUKA2.040e-7455.66Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6S9KFP9_HETAK3.460e-7458.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TF51_9RHOD1.160e-7355.19Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6P1I5_PORUM4.510e-7257.21Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
Q7XYQ0_BIGNA2.360e-7152.89Ferredoxin nitrite reductase n=1 Tax=Bigelowiella ... [more]
A0A8J5XYI8_DIALT1.600e-7056.02Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A1E7FE99_9STRA1.630e-6954.59Ferredoxin-nitrite reductase n=1 Tax=Fragilariopsi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10150contigE-siliculosus-1a_F_contig10150:375..2641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size639
Model size645
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.P
EC1.7.7.1
EggNOG OGsCOG0155@1,KOG0560@2759
EggNOG free text desc.sulfite reductase (ferredoxin) activity
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0010035,GO:0010167,GO:0016020,GO:0016491,GO:0016661,GO:0016662,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0050421,GO:0050896,GO:0055114,GO:0098809,GO:1901698,GO:1901700
KEGG ModuleM00531
KEGG Pathwayko00910,ko01120,map00910,map01120
KEGG ReactionR00790
KEGG koko:K00366
KEGG rclassRC00176
Preferred nameNIR
Seed eggNOG ortholog2880.D7FVZ4
Seed ortholog evalue1.2e-114
Seed ortholog score419.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10150.159.1prot_E-siliculosus-1a_F_contig10150.159.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10150 381..2641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927517.5948362-UTR-E-siliculosus-1a_F_contig10150:374..3801622927517.5948362-UTR-E-siliculosus-1a_F_contig10150:374..380Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10150 375..380 +
1696318564.214559-UTR-E-siliculosus-1a_F_contig10150:374..3801696318564.214559-UTR-E-siliculosus-1a_F_contig10150:374..380Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10150 375..380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927517.609076-CDS-E-siliculosus-1a_F_contig10150:380..6261622927517.609076-CDS-E-siliculosus-1a_F_contig10150:380..626Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10150 381..626 +
1696318564.2281435-CDS-E-siliculosus-1a_F_contig10150:380..6261696318564.2281435-CDS-E-siliculosus-1a_F_contig10150:380..626Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10150 381..626 +
1622927517.6233761-CDS-E-siliculosus-1a_F_contig10150:1156..12691622927517.6233761-CDS-E-siliculosus-1a_F_contig10150:1156..1269Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10150 1157..1269 +
1696318564.2354968-CDS-E-siliculosus-1a_F_contig10150:1156..12691696318564.2354968-CDS-E-siliculosus-1a_F_contig10150:1156..1269Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10150 1157..1269 +
1622927517.6371095-CDS-E-siliculosus-1a_F_contig10150:2361..26411622927517.6371095-CDS-E-siliculosus-1a_F_contig10150:2361..2641Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10150 2362..2641 +
1696318564.2429955-CDS-E-siliculosus-1a_F_contig10150:2361..26411696318564.2429955-CDS-E-siliculosus-1a_F_contig10150:2361..2641Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10150 2362..2641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10150.159.1

>prot_E-siliculosus-1a_F_contig10150.159.1 ID=prot_E-siliculosus-1a_F_contig10150.159.1|Name=mRNA_E-siliculosus-1a_F_contig10150.159.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=213bp
MDNVRNMVGSPIAGLDPLEMVDTRQLCNEINDMITDNRKGNPALTNLPRK
INIAISGGRDDYAHTMINDIGLQPHAHPETGEIGFNVVVGGFFSVKRAAE
SIPLDMWIKQSDTVAFCKGMLLAFRNLGPRKKRQEARLMFMIEEMGMEKF
RETVVEYVKGVDSAFEPQPAAPAPEEAFSRRDYVGAHPQKQEGKSWVCVT
TPAGRLMAEDVS*
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mRNA from alignment at E-siliculosus-1a_F_contig10150:375..2641+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10150.159.1 ID=mRNA_E-siliculosus-1a_F_contig10150.159.1|Name=mRNA_E-siliculosus-1a_F_contig10150.159.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2267bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10150:375..2641+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCGGGATGGACAACGTGCGCAACATGGTGGGCAGCCCCATCGCCGGCCT GGACCCGCTGGAGATGGTCGATACGCGGCAGCTCTGTAACGAGATCAACG ACATGATCACCGACAACCGCAAGGGCAACCCCGCCCTCACCAACCTCCCG CGCAAGATCAACATCGCCATCTCCGGCGGCCGCGACGACTACGCGCACAC CATGATCAATGACATCGGCCTGCAGCCCCACGCGCACCCTGAAACCGGCG AGGTGAAAATACTGTTCGTCTACATGACTATTTACCTGCTGCCTCCCAGC ACAGTTGTTCGTTTTTTTTTTTTTTTACGTTTTTTTCGTGTTCCCTGTGT GACGTTTGGGGCGAGAGATGCTTAGACATTGGAACCACGCGGCGAGATAC GGAGCGGGGGTCTGCAGTGATGTAGTTTTTTTACGTGATTTTTTTGGGCG TGGCGGACGGCGACTAGGAAGAGAAAAAAGGGAGCAAGAGGCGGTGAGCG GGGCGGCGGGGGGCGTTGGATCTGCACCGGCGCACTTGTTTGTTGTCTTG AGAACCTGTCGTGGTAGGCCCAAGAAGTGGTTATTGCGTATGCACGCACA CATGCTGCGTGCTTGAAACGCAAGGTAGCATTCGCCGTTGCTGGCGTGTG TTCTGTTGTTCTGTTCGCTCGTGTACGCCTCGATGGTGTCCCGCCCCTTC TCCGTGTGCCTGACACCCCCCCCTCTCCTACATCGCTGCCTGTGATGATG GCTTTTGGCGTGGGTACATATATACACGGTAGATCGGTTTCAACGTGGTC GTAGGAGGCTTCTTCTCGGTGAAGCGGGCGGCGGAGAGCATCCCCCTCGA CATGTGGATCAAGCAGAGCGACACCGTCGCCTTCTGCAAGGGCATGTGAG CTTTTTCGGTACTTGAGTCGAGGTCCACTGCTGGCGCGTGCTTTGGTGCT CCGAAGGAAATGATGTTGCCATTGCCAGATAGCCCTTCGGTTCTTTTGAA AGCTTTTTTTCTGCTCTCTTAATTTGACACAACAACATACGAGGGGACAA CCAGCACAGCAGCATACGAAACTGCTGTAGGCCAAGGGAAGCCAGAGGCA CACATCATAGCAGGCGTAGGAAGCGATTTTTAGAGTCGGAGGCCTGCTGC TACCAGCGTAAGCGAGGAAAGCAGGTGCGCACTCATGCACAGCAGCAGCA GCAGCCACATGTAGCTGCTACATGTAGCTGATTATGAGAGCTTGTCACAC CAAACAGCGCTCTCACTCATTCCCGGGATGCTACACAGCAGACAACATCT GACTGACTGGTGGTGTCGGGTGAAGTGTGAGGGTGTGCCGTGGTGGCCTC TGTGATGGCGTAGGCACCATATCTAATCTACACCTGCCTTGATCTCTCTC TCTCTCCGCCCCTTCTTTTCGCACTTCGCTTGAAATAATATAGTTTTTTT TTGTTTGACCCCTATGATATGATATGTATGGGAGGTGAGCCTTTTTTGTA GCAGATGCCACTATTTTTGGTTGTTTTTTTTATGTTGTCTGCAGCTCCTC TTGCTGCAGCTAGAAAGGAGCAGGAGCAGTGGAACCTTTTTTTTTCCAGC CTGAGGCATGCAACATGCAACATGCTATCTATGCCGAAGGATGCCCTTCC TTCCAGTCACACCTTCGCGTGTCTACAGGAGGCACAACAGTAGCTCCGAA ACCGCACACAACGCTAACGCTCTTTGTCTGTTTTGGCGAGATCGAAACAA GAAACAAACACCCCCACTTTTCACCGCTACCGAGATTCGTCGTTAGGCCT GCTGCTGTTTCCCGGCGCTCGGCGAAATCACCCCTTCGTCGCCCCCCCCC CCCCNNNNNNNNNNCCCCCCCCGCTCTCTCCGTCTCCCGCGGCTGGTTTC CCCCCCCGCCCGGCAATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCGTTGTCCCAAAAACCCAATTCGTGACACCCCCCAGGCTGTTGGCCTTC CGCAACCTGGGACCGCGCAAGAAACGCCAGGAGGCTCGCCTGATGTTCAT GATCGAGGAGATGGGGATGGAGAAGTTCCGCGAGACCGTCGTGGAGTACG TCAAGGGCGTGGACTCGGCGTTCGAGCCCCAGCCTGCGGCTCCCGCGCCG GAGGAGGCGTTCTCTAGGAGGGACTACGTCGGGGCGCACCCCCAGAAGCA GGAGGGCAAGTCGTGGGTGTGCGTCACCACGCCCGCCGGTCGCTTGATGG CGGAAGATGTGAGTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10150:375..2641+

>mRNA_E-siliculosus-1a_F_contig10150.159.1 ID=mRNA_E-siliculosus-1a_F_contig10150.159.1|Name=mRNA_E-siliculosus-1a_F_contig10150.159.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10150:375..2641+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACAACGTGCGCAACATGGTGGGCAGCCCCATCGCCGGCCTGGACCC
GCTGGAGATGGTCGATACGCGGCAGCTCTGTAACGAGATCAACGACATGA
TCACCGACAACCGCAAGGGCAACCCCGCCCTCACCAACCTCCCGCGCAAG
ATCAACATCGCCATCTCCGGCGGCCGCGACGACTACGCGCACACCATGAT
CAATGACATCGGCCTGCAGCCCCACGCGCACCCTGAAACCGGCGAGATGG
ACAACGTGCGCAACATGGTGGGCAGCCCCATCGCCGGCCTGGACCCGCTG
GAGATGGTCGATACGCGGCAGCTCTGTAACGAGATCAACGACATGATCAC
CGACAACCGCAAGGGCAACCCCGCCCTCACCAACCTCCCGCGCAAGATCA
ACATCGCCATCTCCGGCGGCCGCGACGACTACGCGCACACCATGATCAAT
GACATCGGCCTGCAGCCCCACGCGCACCCTGAAACCGGCGAGATCGGTTT
CAACGTGGTCGTAGGAGGCTTCTTCTCGGTGAAGCGGGCGGCGGAGAGCA
TCCCCCTCGACATGTGGATCAAGCAGAGCGACACCGTCGCCTTCTGCAAG
GGCATATCGGTTTCAACGTGGTCGTAGGAGGCTTCTTCTCGGTGAAGCGG
GCGGCGGAGAGCATCCCCCTCGACATGTGGATCAAGCAGAGCGACACCGT
CGCCTTCTGCAAGGGCATGCTGTTGGCCTTCCGCAACCTGGGACCGCGCA
AGAAACGCCAGGAGGCTCGCCTGATGTTCATGATCGAGGAGATGGGGATG
GAGAAGTTCCGCGAGACCGTCGTGGAGTACGTCAAGGGCGTGGACTCGGC
GTTCGAGCCCCAGCCTGCGGCTCCCGCGCCGGAGGAGGCGTTCTCTAGGA
GGGACTACGTCGGGGCGCACCCCCAGAAGCAGGAGGGCAAGTCGTGGGTG
TGCGTCACCACGCCCGCCGGTCGCTTGATGGCGGAAGATGTGAGTTGAGC
TGTTGGCCTTCCGCAACCTGGGACCGCGCAAGAAACGCCAGGAGGCTCGC
CTGATGTTCATGATCGAGGAGATGGGGATGGAGAAGTTCCGCGAGACCGT
CGTGGAGTACGTCAAGGGCGTGGACTCGGCGTTCGAGCCCCAGCCTGCGG
CTCCCGCGCCGGAGGAGGCGTTCTCTAGGAGGGACTACGTCGGGGCGCAC
CCCCAGAAGCAGGAGGGCAAGTCGTGGGTGTGCGTCACCACGCCCGCCGG
TCGCTTGATGGCGGAAGATGTGAGTTGA
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