mRNA_E-siliculosus-1a_F_contig1015.157.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1015.157.1 vs. uniprot
Match: D8LQJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQJ3_ECTSI) HSP 1 Score: 2949 bits (7645), Expect = 0.000e+0 Identity = 1636/2001 (81.76%), Postives = 1674/2001 (83.66%), Query Frame = 1 Query: 214 MEESYGAVGLAIFRLVADSGEEAECVKSQAILRSVLQRHPVIRGFALSTLAKRLREGATAGNQPSQRHRASAGASAEARVPHTGIRLALEVLLASYHPSASHVVAPVVDALGDSSLEALLHTQGGTSPLLPWAARLCLLHACLAGASAGSKRWRWLPTVADSACSLALQEIATEGSSSLSGSDAGKXXXXXXGHGAKSAPTKQIANRVAAGTDKAEIYQATLMADVCAELVRVEVAGPAAVSTKKSGFLFGSLGTTPDDVVRISSAGAAASLPERHAADSFRLKLQGLRDALLSRRGSEGNAPVGQSVPSVRTIIGDVALEDRDIHPQAVKRALERGRCGEAFILAVQAALKEQLTPTSTAEAKDQQFSSNSGRRVSVNLKLALETCLFGVGLAGGRGLLDAVVPDGDEIGFTSTSSSIRATGTTEARQACALMQGLVEEGTRIRDLLLVLVGMYQERERLPPTSSPAISMDSGRPTGAQVVATVQSACDFRRRTLATVVGAFVGWLADTPWVWGATEGVEGEDWEGDFEAAAMATFVVFPIPGAACADEGIRTAGLVERVRSDVRESCPYNQDSSGEGQPRNGSVGSRGVDPTEVLDRLVAGAAMAMGRVDADEVEWLDVLRRVATAGGASDALKTYAIACVERSASLGGQAPFMVSGKRRFSQVGGKELWGLLQGACLVHEEKMPASLIVRTAAAVVTASRKTCQSWMVSPGLLGSSPIRVVIDMLTAAKGCLSPSDLLAGLLEGPGDDGPALAADVFAAFIAASAAGHGRTAGGNNEVGDLRSLSMAWLHGALATAVLPVRTPAGSTVDLDRVMSATALTRVLIQRVPFEAKPVLLAVEEAAELATAGRGVGGCTRRSGKSRRVSGRGVRENLDGDAASPLASLLKLAGAAKQSRLLPLPVPATGSPPRSAGLKYGEASGAGAVGVGDDEESPAKDRDGWQADASAAFVTAGLLLDAFVRSPTAARRSIREAMQQGGCGNELQVVQRVLRTALCTAPASPGQPLGGIPTTLPAGSGDRKVAACLLVGFLVESGVPGWDETKAAMTPPPPQLLVATEEAVRTEGESYVWHSDHSRQQLTALRLEVMLQSLLCDVGGSRLIGDMDIEKSFPDVFRTARTLARAIAHHASALVTRTNQGQEAWRTNDYHRFQSGGGGFEGVDPRWPSVVGGSCSRDGEGAGNRQLELPRRALAGRLQHSPAAAALTSWVSSIVKTVKQFRRWLPWQPLADELRELVLRNARQKPVRQPVSGGERNETEGRTLAAEAAVFAVSELLLAWDEGGEEVVPAVFQSVLCSKALKIAVAPVASDAPPPIWLELLRCLIDEGQCDVSGWMSSCVNGSTQQDPLAMASAAAVWIGGDGPRAGQRSRRGTHEAWVYWYGARLGSLIPMGDADFGDWLILSSATGASAGGGVQVRVEGLVRTIQPDEWEHWGRSPLQAAWNFPGTWAAVSQSSESTSTEGAPPAILLPQFASWLRVVLRGGSTCPKHLLEAYLRRMALEVYLPCQFGRASNEMARQWLAVLIEAEATAEESGRKRAKMAADAVVCDGGSVTADPSSGSAGGMVSACHLVVKAFFREELLRFGSGEAPAAPNGGPMSWLWPLEAVVAACGNSGSFGGGSLARRRRGSLGPEGIDSDASSRITLDGPPSALARALSTVPHDLLCGSRRFGMGGQPPPALATLRAFATRVVDLTARALATPPCRQWSVARQLLLGLGLLYHALAKPVPARGGKLQKSFGAPSRAGAVESDSAAQEAAQAVALSAIEGLVRIALGLGNLGVGERESGGGGNRGSAAASKSGNPLLTSACLALRPLETGGCAGADDFARALMGAGAWRAETAFFGERSAAQASSSVKAPSLGKTAPALVLTASLAPSXXXXXXXXXXXXXXXQGHRLSSPGATPAVEPHQSVGGDQASGQSTADCCISLAQELVGGAQPCSSGRGEREQVVGSPRAPSWGMPARQKKKARLSTNAMEGKSPPPSSPRRVLPMRXXXXXXXXEGSE 6216
MEESYGAVGLAIFRLVADSGEEAEC+KSQAILR VLQRHPV+RGFALSTLA+RLREGATAGNQPS+RHRASAGASAEARVPHTGIRLALEVLLASYHPSASHVV+PVVDALGDS+LE GGTSPLLPWAARLCLLHACLAG SAGSKRWRWLPTVADSACSLALQEIATEGSSS+SGS+AGKXXXXXXGHGAKSAPTK+IANRVAAGTDKAE+YQATLMADVC EL RVEVA PAAVSTKKSGFLFGSLGTTPDDV RISSAGAAASLP RHAADSFRLKLQGLRDALLSRRGSEGNAPVGQSVPSV TIIGDVALED DIHPQAVKRALERGRCGEAFILAVQAALKEQLTPTST EAKDQQFSSN GRR+SVNLKLALETCLFG GLAGGRGLLDAVVPDGDEIGFTSTSSS RA GTTEARQACALMQGLVEEGTRIRDLLLVLVGMYQERERLPPTSSPAISMDSGR GAQ APFMVSGKRRFSQVGGKELWGLLQGACLVHEEKMPASLIVRTAAAVVTASRKTCQS MVSPGLLGSSPIRVVIDMLTAAK CL+ SDLL GLLE PGDDGPALAADVFAAFIAASAAG+GRTAGG+NEVGDLRSLSM+WLHGALATAVLPVRTPAGSTV+L+RVMSATALTRVLIQRVPFEAKPVLLAVEEAAELATAGRGVGGCTRRSGKSRRVSGRG ENLDGDAASPLASLLKLAGAAKQSRLLPLPVP+T SPPRSAGLK GEASGAGAVG GIPTTLPAGSGDRKVAACLLVGFLVESGVPGWDETKAAMTPPPPQLLVA EE+VRTEGES+VWHS HSRQQLTALRLEVMLQSLLCDVGGSRLIGDMD+EKSFPDVFRTARTLARAIAHHASALVTR NQGQ+AWRTNDYHRFQSGGGGFEGVDP WPS+VGGSCSR GEGAGNRQL+LPRRALAGRLQHSPAAAALTSWVSSIVKTV+QFRRWLPWQPLADELRELVLRNAR+KPVRQ VSGGERNET+GRTLAAEAAVFAVSELLLAWDEGGEEVVPAVFQSVLCSKAL IAVAPVASDAPPPIWLELLRCL+DEGQCD+SGWMSSC++GS QQDPLAMASAAAVWIGGDGPRAGQRSRRGTHEAWV+WYGA+LGSLIP GDADFGDWLILSSATGASA GGVQVRVEGL RTIQPDEWEHWGRSPLQAAWNFPGTWAAVSQ SES S+EGAPPAILLP FASWLRVVLRGGSTCPKHLLEAYLRRMALEVYLPCQFGRASNEMARQWLAVLIEAEATAE SGRKRAKMAADAVVCD GSVTADPSSGSA GMVSACHLVVKAFFREELLRFGSGEAPAAPNGGPMSWLWPLEAVVAACGN+GSFG GSLARRRRGSLGPEGIDSDASSRITLDGPPSALARALSTVPHDLLCGSRRFGMGGQPPPALATLRAFATRVVDLTARALATPPCR WSVARQLLLGLGLLYHALAKPV ARGGKLQKSFGAPSRAG VE DSAAQEAAQAVALSAIEGLVRI+LGLGNLGVGER+SG GGNRGSAAASKSGNPLLTSACLALRPLETGGCAGADDFARALMGAGAWRAETAFFGERSAAQASSSVKAPSL TAPAL TASLA S XX QGHRLSSPGATPAVEPH SVGGDQASGQSTADCCISLAQELVGGAQ CSSGRGEREQVVGSPRAPSW MP+RQKKKARLSTNAMEGKSPPPSSPRRVLPMRXXXXXXXXEGSE
Sbjct: 1 MEESYGAVGLAIFRLVADSGEEAECLKSQAILRCVLQRHPVVRGFALSTLARRLREGATAGNQPSRRHRASAGASAEARVPHTGIRLALEVLLASYHPSASHVVSPVVDALGDSNLE------GGTSPLLPWAARLCLLHACLAGTSAGSKRWRWLPTVADSACSLALQEIATEGSSSVSGSEAGKXXXXXXGHGAKSAPTKEIANRVAAGTDKAEMYQATLMADVCTELARVEVAEPAAVSTKKSGFLFGSLGTTPDDVARISSAGAAASLPGRHAADSFRLKLQGLRDALLSRRGSEGNAPVGQSVPSVTTIIGDVALEDLDIHPQAVKRALERGRCGEAFILAVQAALKEQLTPTSTTEAKDQQFSSNRGRRISVNLKLALETCLFGSGLAGGRGLLDAVVPDGDEIGFTSTSSSTRAKGTTEARQACALMQGLVEEGTRIRDLLLVLVGMYQERERLPPTSSPAISMDSGRLAGAQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------APFMVSGKRRFSQVGGKELWGLLQGACLVHEEKMPASLIVRTAAAVVTASRKTCQSRMVSPGLLGSSPIRVVIDMLTAAKDCLTASDLLTGLLEVPGDDGPALAADVFAAFIAASAAGNGRTAGGDNEVGDLRSLSMSWLHGALATAVLPVRTPAGSTVELNRVMSATALTRVLIQRVPFEAKPVLLAVEEAAELATAGRGVGGCTRRSGKSRRVSGRGGGENLDGDAASPLASLLKLAGAAKQSRLLPLPVPSTVSPPRSAGLKCGEASGAGAVGA-------------------------------------------------------------------------------GIPTTLPAGSGDRKVAACLLVGFLVESGVPGWDETKAAMTPPPPQLLVAAEESVRTEGESHVWHSYHSRQQLTALRLEVMLQSLLCDVGGSRLIGDMDVEKSFPDVFRTARTLARAIAHHASALVTRPNQGQQAWRTNDYHRFQSGGGGFEGVDPHWPSIVGGSCSRGGEGAGNRQLKLPRRALAGRLQHSPAAAALTSWVSSIVKTVRQFRRWLPWQPLADELRELVLRNARRKPVRQLVSGGERNETQGRTLAAEAAVFAVSELLLAWDEGGEEVVPAVFQSVLCSKALNIAVAPVASDAPPPIWLELLRCLVDEGQCDMSGWMSSCLDGSAQQDPLAMASAAAVWIGGDGPRAGQRSRRGTHEAWVHWYGAKLGSLIPTGDADFGDWLILSSATGASASGGVQVRVEGLARTIQPDEWEHWGRSPLQAAWNFPGTWAAVSQRSESQSSEGAPPAILLPPFASWLRVVLRGGSTCPKHLLEAYLRRMALEVYLPCQFGRASNEMARQWLAVLIEAEATAEGSGRKRAKMAADAVVCDWGSVTADPSSGSAVGMVSACHLVVKAFFREELLRFGSGEAPAAPNGGPMSWLWPLEAVVAACGNNGSFGRGSLARRRRGSLGPEGIDSDASSRITLDGPPSALARALSTVPHDLLCGSRRFGMGGQPPPALATLRAFATRVVDLTARALATPPCRHWSVARQLLLGLGLLYHALAKPVSARGGKLQKSFGAPSRAGDVELDSAAQEAAQAVALSAIEGLVRISLGLGNLGVGERDSGEGGNRGSAAASKSGNPLLTSACLALRPLETGGCAGADDFARALMGAGAWRAETAFFGERSAAQASSSVKAPSLDNTAPALEQTASLALSLPPPPXXLSPQAGPEQGHRLSSPGATPAVEPHHSVGGDQASGQSTADCCISLAQELVGGAQQCSSGRGEREQVVGSPRAPSWDMPSRQKKKARLSTNAMEGKSPPPSSPRRVLPMRXXXXXXXXEGSE 1744 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1015.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1015.157.1 >prot_E-siliculosus-1a_F_contig1015.157.1 ID=prot_E-siliculosus-1a_F_contig1015.157.1|Name=mRNA_E-siliculosus-1a_F_contig1015.157.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=2003bp MEESYGAVGLAIFRLVADSGEEAECVKSQAILRSVLQRHPVIRGFALSTLback to top mRNA from alignment at E-siliculosus-1a_F_contig1015:23467..32749- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1015.157.1 ID=mRNA_E-siliculosus-1a_F_contig1015.157.1|Name=mRNA_E-siliculosus-1a_F_contig1015.157.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9283bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:23467..32749- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1015:23467..32749- >mRNA_E-siliculosus-1a_F_contig1015.157.1 ID=mRNA_E-siliculosus-1a_F_contig1015.157.1|Name=mRNA_E-siliculosus-1a_F_contig1015.157.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=12018bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:23467..32749- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |