mRNA_E-siliculosus-1a_F_contig1250.1558.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1250.1558.1
Unique NamemRNA_E-siliculosus-1a_F_contig1250.1558.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1250.1558.1 vs. uniprot
Match: A0A6H5K9D0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D0_9PHAE)

HSP 1 Score: 1409 bits (3647), Expect = 0.000e+0
Identity = 852/1051 (81.07%), Postives = 879/1051 (83.63%), Query Frame = 2
Query:  125 MAPRQVFPYDECGVLRTPRQLLAESQQQEQQH---------HQREQWAELDKPSPFTPTFDELGSSGGEAGYVQQPHCSDLRDALNDDXXXXXXESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWNCAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFHRHQTSPRPXXXXXXXXXXXXXXXXXXQGPTTELXXXXXXXXXXXXXX--AGLPYERDARAES-SSTTCTSAGGNAGDGGGEEAGTGAGVPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAPPEFGVQNGRPSSRGAGCKGASGNEGGGGAFRGAVGFGXXXXFQSWPQQXXXXXXXXXXXXXXXXXXXXXXXXXXRAVHALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSDSQQRTATAPGIMALDGSSDRLAHHLSRSGSLPAATRERGHTIAAGLTSTRRSFCDDVIGGSXXXXXXGSLSQQHQFGGEGDMEWPRSVSSSGVPLPRHHRASRYTPGHAGFLRDAAA-GAVAEQRDYGGRPSVLGGPVELQDQYPHRNSRLQHPSDMVGRIGGQESSMRKQLQDHEHHHGIGSG--HVRPYSAGAVGPGTGGGG-NYGIVRRDMPTRSASCRPYNEHPHPAAALPPSSWDCLGSGEGVAAGAGDGEAYLDWSGSTVPPPSGRRELRRWSLQQQQXXXXR----------WEQQDALDRATGAFA-AAWPKDPTRLPQEGWVEDNDIGTRNNHDAAAGFSAWDPGFGDEQLGRPRQQSPPARFRNGVAAVSASTAALHAHPRRHSVTEGLVGDEAIRAEVAGGXXXXXXXXXR--AGAVFGGAVPIDKDNGGSCPPGFSAGVTRGYGDGGNGRRWSETGNGMSQQVQGEERGVEVDFGSLSMADHPRGGRTWGGASSLMPEGGTAPAGDDIVGGLWEGIGAGGLDSQERSSSWPNPLLSPGSGGRSPWGT 3190
            MAPRQVFPYDECGVLRTPRQLLAESQ               HQRE W +LD PSPFTPTFDE GSSGGEAG VQQPH SDLRDAL DDXXXXX ESLDLG  WASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQAN AI+TMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEW+CAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIF+RHQTSPR     XXXXXXXXXXXXXXQGPTTEL    XXXXXXXXXX  AGL YERDAR ES SSTTCTSAG NA DGGGE+ GTGAGVPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAPPE GVQNGRP+SRGAGCKG SGN GGGGAFRGAVG GXXXX       XXXXXXXXXXX               RAVHALE     XXXXXXXXXXXXXX           PSDSQQR A AP IMALDGSSDRL HHLS SGS PAATRERG+TIA+GLTSTRR+FCDDVIGGS  XXX GSLSQQH+FGGEG+   PRSVSSSGVPLPRHHRASRY+P HAGFLRD A   A AEQRDYGGRPS  GGPVEL DQYPHRNSR QHPS MVGR+GGQESSMR+QLQDH           HVRPYSAGAV PGTGGGG NYGIVRRDMPTRSASCRPY+EH HPAAALPPSS DCLGS EGVAAGAGDGEAYLDWSGSTVPPPSGRRELRRWSLQQQQXXXX           WEQQDALDRATGAFA AAWPKD  RL +EGWVEDNDIGTRN++++AA FS WD GFG+EQ GR RQQSPPARFRNGVAAVSASTAALHAHPRRHSVTEGLVG         GGXXXXXXXXX   A AV GGAVP DKDNGGSCPPGFSAG+TRGYG+G N RRWSET N + QQ QGEERGVEVDFGSL+++DH  GGRTWGG SSLMPEGGTAP  DDIVGGLWEGIGAGGLDSQE SSSWPN LLSPGSGGRSPWGT
Sbjct:    1 MAPRQVFPYDECGVLRTPRQLLAESQXXXXXXXXXXXXXXXHQREPWLDLDNPSPFTPTFDESGSSGGEAGCVQQPHSSDLRDALKDDXXXXX-ESLDLGTAWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANLAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQTSPR-LPQPXXXXXXXXXXXXXXQGPTTELSLPLXXXXXXXXXXXXAGLRYERDARRESRSSTTCTSAGDNAADGGGEKDGTGAGVPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAPPESGVQNGRPASRGAGCKGGSGN-GGGGAFRGAVGIGXXXXXXX----XXXXXXXXXXXSSPLIDPRRQGGDHSRAVHALEHQHLLXXXXXXXXXXXXXXPYHRHR-----PSDSQQRNAAAPSIMALDGSSDRLTHHLSLSGSSPAATRERGYTIASGLTSTRRAFCDDVIGGSSGXXXAGSLSQQHRFGGEGER--PRSVSSSGVPLPRHHRASRYSPTHAGFLRDVATVEAAAEQRDYGGRPSAPGGPVELHDQYPHRNSRPQHPSGMVGRMGGQESSMRQQLQDHXXXXXXXXXXXHVRPYSAGAVDPGTGGGGGNYGIVRRDMPTRSASCRPYSEHQHPAAALPPSSRDCLGSWEGVAAGAGDGEAYLDWSGSTVPPPSGRRELRRWSLQQQQXXXXXXXXXXXXXXXWEQQDALDRATGAFATAAWPKDAARLLEEGWVEDNDIGTRNDNNSAAVFSGWDSGFGEEQRGRRRQQSPPARFRNGVAAVSASTAALHAHPRRHSVTEGLVG--------GGGXXXXXXXXXXXLARAVVGGAVPTDKDNGGSCPPGFSAGLTRGYGNGSNERRWSETDNCILQQAQGEERGVEVDFGSLTLSDHS-GGRTWGGVSSLMPEGGTAPNDDDIVGGLWEGIGAGGLDSQELSSSWPNSLLSPGSGGRSPWGT 1028          
BLAST of mRNA_E-siliculosus-1a_F_contig1250.1558.1 vs. uniprot
Match: D7FYA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA1_ECTSI)

HSP 1 Score: 701 bits (1809), Expect = 1.050e-241
Identity = 372/465 (80.00%), Postives = 380/465 (81.72%), Query Frame = 2
Query: 1808 MEWPRSVSSSGVPLPRHHRASRYTPGHAGFLRDAAAGAVAEQRDYGGRPSVLGGPVELQDQYPHRNSRLQHPSDMVGRIGGQESSMRKQLQDHEHHHGIGSGHVRPYSAGAVGPGTGGGGNYGIVRRDMPTRSASCRPYNEHPHPAAALPPSSWDCLGSGEGVAAGAGDGEAYLDWSGSTVPPPSGRRELRRWSLQQQQXXXX----RWEQQDALDRATGAFA-AAWPKDPTRLPQEGWVEDNDIGTRNNHDAAAGFSAWDPGFGDEQLGRPRQQSPPARFRNGVAAVSASTAALHAHPRRHSVTEGLVGDEAIRAEVAGGXXXXXXXXXRAGAVFGGAVPIDKDNGGSCPPGFSAGVTRGYGDGGNGRRWSETGNGMSQQVQGEERGVEVDFGSLSMADHPRGGRTWGGASSLMPEGGTAPAGDDIVGGLWEGIGAGGLDSQERSSSWPNPLLSPGSGGRSPWG 3187
            ME PRSVSSSGVPLPRHHRAS YTPGHAGFLRDAAA   AEQRDYGGRPS  GGPVELQDQYPHR SR QHPSDMVGRIGGQESSMR+QLQDH                           NYGIVRRDMPTRSASCRPY+EH HPAAALPPSSWDCLGSGEGVAAG GDGEAYLDWSGSTVPPPSGRRELRRWSLQQQ XXXX    RWEQQDALDRATGAFA AAWPKDP RLPQEGWVEDNDIGTRNNHDAAAGFSAWDPGFGDEQLGR  QQSPPARFRNGVAAV+AST AL  HPRRHSVTEGLVG++ IRAEVAG          RA AV GGA P DKDNGGSCPPGFSAG+TRGY +G NGRR SETGN MSQQ QGEERGVEVDFGSLSM+ HPRGGR WGGASSLMPEGGTAP  DDIVGGLWEGIGAGGLDSQERS SWPNP      G   P G
Sbjct:    1 MERPRSVSSSGVPLPRHHRASHYTPGHAGFLRDAAAAVAAEQRDYGGRPSAPGGPVELQDQYPHRKSRPQHPSDMVGRIGGQESSMRQQLQDHXXXXXXXXXXXXXXXXXXXXXXX----NYGIVRRDMPTRSASCRPYSEHQHPAAALPPSSWDCLGSGEGVAAGTGDGEAYLDWSGSTVPPPSGRRELRRWSLQQQXXXXXXXXXRWEQQDALDRATGAFATAAWPKDPARLPQEGWVEDNDIGTRNNHDAAAGFSAWDPGFGDEQLGRRLQQSPPARFRNGVAAVAASTTALDTHPRRHSVTEGLVGNKTIRAEVAG--CGGVGSGGRARAVVGGAFPTDKDNGGSCPPGFSAGLTRGYSNGSNGRRLSETGNDMSQQPQGEERGVEVDFGSLSMSAHPRGGRAWGGASSLMPEGGTAPTDDDIVGGLWEGIGAGGLDSQERSLSWPNPAFFSRFGRSQPVG 459          
BLAST of mRNA_E-siliculosus-1a_F_contig1250.1558.1 vs. uniprot
Match: D7FYA2_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA2_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 2.260e-123
Identity = 200/223 (89.69%), Postives = 205/223 (91.93%), Query Frame = 2
Query:  125 MAPRQVFPYDECGVLRTPRQLLAESQQQE---------QQHHQREQWAELDKPSPFTPTFDELGSSGGEAGYVQQPHCSDLRDALNDDXXXXXX-ESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWNCAYICQLLKEKMPGL 763
            MAPRQVFPY ECGVLRTPRQLLAESQQQ+         +QH Q EQWA++DKPSPFTPTFDE GSSGGEA  VQQPHCSDLRDALNDDXXXXXX ESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEW+CAYICQLLKEKM  L
Sbjct:    1 MAPRQVFPYHECGVLRTPRQLLAESQQQQRKELESXXXEQHRQGEQWADIDKPSPFTPTFDESGSSGGEAACVQQPHCSDLRDALNDDXXXXXXXESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMVRL 223          
BLAST of mRNA_E-siliculosus-1a_F_contig1250.1558.1 vs. uniprot
Match: A0A836CKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV5_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.060e-37
Identity = 83/171 (48.54%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  425 PKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLG-------------------VLPSDENRTLFVGGLQEEWNCAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFHRHQTS 880
            P PGVEIFVGGLTRS+ R++L D F H G++TEVRIARDKRRRRCRGYG+VRF TSEQAN A+++M  F+FK G +L                    VLPSDENRTL+  G++E+ +   +C  L     G++++  +  +ED  K+R FCF+EF ++ +AAV    H+ S
Sbjct:  151 PCPGVEIFVGGLTRSSTRELLYDCFSHIGDITEVRIARDKRRRRCRGYGFVRFRTSEQANMAVESMQAFQFKRGCYLSALLNAKKIAXXXXXXXXXXVLPSDENRTLYACGIEEDVSPDAVCWFLTRSFEGIKRIHLMWGKEDVCKLRPFCFIEFHTNEQAAVALLSHRQS 321          
BLAST of mRNA_E-siliculosus-1a_F_contig1250.1558.1 vs. uniprot
Match: A0A836CJD8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD8_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.250e-35
Identity = 79/175 (45.14%), Postives = 106/175 (60.57%), Query Frame = 2
Query:  425 PKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWNCAYICQLLKEKMPGLRK--------------------------VEPIPDREDRFKIRTFCFLEFASHAEAAVIFHRH 871
            P PGVEIFVGGLTR++  +ML DWF H GE+TEVR+ARDKRRRRCRGYG+VRF  SEQAN AI+ M  ++FK G +LG+LPSDENRTL+V G+ + W+   +         G+++                          ++ + DRE   ++R FCF+EF +H  A     R+
Sbjct:  230 PPPGVEIFVGGLTRASSAEMLYDWFCHLGEITEVRVARDKRRRRCRGYGFVRFRNSEQANLAIEAMQGYQFKKGCYLGMLPSDENRTLYVSGMCQSWSQDQVHAYFSANFEGVKRQVELCAARDAAARRAPLCWRRVASIRMQLVWDRETPSRLRPFCFVEFDTHEHATSAHARY 404          
BLAST of mRNA_E-siliculosus-1a_F_contig1250.1558.1 vs. uniprot
Match: A0A803NC05_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NC05_CHEQI)

HSP 1 Score: 107 bits (267), Expect = 7.470e-20
Identity = 69/198 (34.85%), Postives = 104/198 (52.53%), Query Frame = 2
Query:  296 GGEAGYVQQPHCSDLRD----ALNDDXXXXXXESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWNCAYICQLLKE-KMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFHRHQ 874
            G E G+V+ P   DL++       D+      E  +L A  A++E   K  +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT +QA RA+  M     + G+  G  P+++N TLF+G +   W    I Q LK+  + G+  +  + D       R FCF++FA HA+A   + R Q
Sbjct:  502 GDEEGFVE-PGDEDLQEDDEPETGDEMKALEVEHKELAA--AAKERKVKKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 695          
BLAST of mRNA_E-siliculosus-1a_F_contig1250.1558.1 vs. uniprot
Match: A0A7C9F016_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9F016_OPUST)

HSP 1 Score: 106 bits (264), Expect = 1.210e-19
Identity = 71/198 (35.86%), Postives = 103/198 (52.02%), Query Frame = 2
Query:  296 GGEAGYVQQPHCSDLRDA----LNDDXXXXXXESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWNCAYICQLLKE-KMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFHRHQ 874
            G E G+V+ P   DL++       D+      E  +L A  A++E   K   EIFVGGL R    D L+  F+  GEV EVR+ +D    + RG+ +VRFAT +QA RA+  M     + G+  G  P+++N TLFVG +   W    I Q LK+  + G+  +  + D       R FCF++FA HA+A   + R Q
Sbjct:  286 GDEEGFVE-PGEEDLQEDDEPDTADEIKASEEEHKELAA--AAKERRVKKEHEIFVGGLDREVVEDDLKKAFEKVGEVVEVRLLKDPLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFVGNICNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 479          
BLAST of mRNA_E-siliculosus-1a_F_contig1250.1558.1 vs. uniprot
Match: A0A803NB38_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NB38_CHEQI)

HSP 1 Score: 103 bits (256), Expect = 5.550e-19
Identity = 58/157 (36.94%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  407 ASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWNCAYICQLLKE-KMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFHRHQ 874
            A++E   K  +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT +QA RA+  M     + G+  G  P+++N TLF+G +   W    I Q LK+  + G+  +  + D       R FCF++FA HA+A   + R Q
Sbjct:  243 AAKERKVKKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 398          
BLAST of mRNA_E-siliculosus-1a_F_contig1250.1558.1 vs. uniprot
Match: A0A5J5BXV2_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BXV2_9ASTE)

HSP 1 Score: 103 bits (256), Expect = 1.240e-18
Identity = 61/166 (36.75%), Postives = 94/166 (56.63%), Query Frame = 2
Query:  380 ESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWNCAYICQLLKEK-MPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFHRHQ 874
            E ++L A  A++E   K  +EIFVGGL R    + ++  F+  GEV EVR+ ++    + +GY +V+FAT EQA+RA+  M       G+  G  PS++N TLF+G +   W    I Q LK+  + G+ K+  + D +     R F FLEF+ HA+A + + R Q
Sbjct:  331 EQMELTA--AAKELKIKKELEIFVGGLDRDAVEEDVKKAFEKIGEVVEVRLHKNPSTNKNKGYAFVKFATKEQASRALSEMKN-PLIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVEKITLVSDAQHEGLSRGFAFLEFSCHADAMLAYKRLQ 493          
BLAST of mRNA_E-siliculosus-1a_F_contig1250.1558.1 vs. uniprot
Match: UPI00053FBE2C (nucleolin-like isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FBE2C)

HSP 1 Score: 102 bits (255), Expect = 1.590e-18
Identity = 69/207 (33.33%), Postives = 104/207 (50.24%), Query Frame = 2
Query:  269 PTFDELGSSGGEAGYVQQPHCSDLRD----ALNDDXXXXXXESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWNCAYICQLLKE-KMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFHRHQ 874
            PT + +   G E  +V+ P   DL++     + D+        L   A   ++E   K  +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT +QA RA+  M       G+  G  P+++N TLF+G +   W    I Q LKE  + G+  +  + D       R FCF++FA HA+A   + R Q
Sbjct:  288 PTAEGIEDYGDEERFVE-PGDEDLQEDDEPEIGDEMKPEEEHKLFAAA---AKERKVKKELEIFVGGLDREVVEDDVKTAFEKVGEVVEVRLLKDPSTNKNRGFAFVRFATKDQAKRALSEMKN-PVICGKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKEYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 489          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1250.1558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9D0_9PHAE0.000e+081.07RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYA1_ECTSI1.050e-24180.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYA2_ECTSI2.260e-12389.69RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CKV5_9STRA1.060e-3748.54RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CJD8_9STRA1.250e-3545.14RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A803NC05_CHEQI7.470e-2034.85Uncharacterized protein n=2 Tax=Chenopodium quinoa... [more]
A0A7C9F016_OPUST1.210e-1935.86Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
A0A803NB38_CHEQI5.550e-1936.94Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A5J5BXV2_9ASTE1.240e-1836.75Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
UPI00053FBE2C1.590e-1833.33nucleolin-like isoform X1 n=2 Tax=Beta vulgaris su... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1250contigE-siliculosus-1a_F_contig1250:7395..14533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size3069
Model size3234
Exons4
Ec32 orthologEc-24_003230.1
Ec32 ortholog descriptionRNA recognition motif domain
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG0117@1,KOG0117@2759
EggNOG free text desc.cytidine to uridine editing
Seed eggNOG ortholog2880.D7FYA2
Seed ortholog evalue9.6e-104
Seed ortholog score385.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1250.1558.1prot_E-siliculosus-1a_F_contig1250.1558.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1250 7519..14492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927772.9257855-UTR-E-siliculosus-1a_F_contig1250:7394..75181622927772.9257855-UTR-E-siliculosus-1a_F_contig1250:7394..7518Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1250 7395..7518 +
1696318674.2913744-UTR-E-siliculosus-1a_F_contig1250:7394..75181696318674.2913744-UTR-E-siliculosus-1a_F_contig1250:7394..7518Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1250 7395..7518 +
1622927772.9899254-UTR-E-siliculosus-1a_F_contig1250:14492..145331622927772.9899254-UTR-E-siliculosus-1a_F_contig1250:14492..14533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1250 14493..14533 +
1696318674.3610237-UTR-E-siliculosus-1a_F_contig1250:14492..145331696318674.3610237-UTR-E-siliculosus-1a_F_contig1250:14492..14533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1250 14493..14533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927772.939446-CDS-E-siliculosus-1a_F_contig1250:7518..81481622927772.939446-CDS-E-siliculosus-1a_F_contig1250:7518..8148Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1250 7519..8148 +
1696318674.3157616-CDS-E-siliculosus-1a_F_contig1250:7518..81481696318674.3157616-CDS-E-siliculosus-1a_F_contig1250:7518..8148Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1250 7519..8148 +
1622927772.9523287-CDS-E-siliculosus-1a_F_contig1250:11025..118651622927772.9523287-CDS-E-siliculosus-1a_F_contig1250:11025..11865Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1250 11026..11865 +
1696318674.32893-CDS-E-siliculosus-1a_F_contig1250:11025..118651696318674.32893-CDS-E-siliculosus-1a_F_contig1250:11025..11865Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1250 11026..11865 +
1622927772.9659007-CDS-E-siliculosus-1a_F_contig1250:12200..130851622927772.9659007-CDS-E-siliculosus-1a_F_contig1250:12200..13085Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1250 12201..13085 +
1696318674.3385167-CDS-E-siliculosus-1a_F_contig1250:12200..130851696318674.3385167-CDS-E-siliculosus-1a_F_contig1250:12200..13085Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1250 12201..13085 +
1622927772.9780831-CDS-E-siliculosus-1a_F_contig1250:13778..144921622927772.9780831-CDS-E-siliculosus-1a_F_contig1250:13778..14492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1250 13779..14492 +
1696318674.3488686-CDS-E-siliculosus-1a_F_contig1250:13778..144921696318674.3488686-CDS-E-siliculosus-1a_F_contig1250:13778..14492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1250 13779..14492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1250.1558.1

>prot_E-siliculosus-1a_F_contig1250.1558.1 ID=prot_E-siliculosus-1a_F_contig1250.1558.1|Name=mRNA_E-siliculosus-1a_F_contig1250.1558.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1023bp
MAPRQVFPYDECGVLRTPRQLLAESQQQEQQHHQREQWAELDKPSPFTPT
FDELGSSGGEAGYVQQPHCSDLRDALNDDDDDDDDESLDLGAVWASREFV
PKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGY
VRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWNCA
YICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFHRHQ
TSPRPPQPPPHQQPAAAAASSTPQGPTTELPLPPPSATSAAGGGAGLPYE
RDARAESSSTTCTSAGGNAGDGGGEEAGTGAGVPLVVGGATLKVDWADPL
RYHIHLNGGIKGPSAPPEFGVQNGRPSSRGAGCKGASGNEGGGGAFRGAV
GFGGGGAFQSWPQQEQQQGLMRRSSPPPLIDPRRQGGDHSRAVHALEHQQ
LLQQRHQHQRRQQQQQQQQQQPYHRHHPSDSQQRTATAPGIMALDGSSDR
LAHHLSRSGSLPAATRERGHTIAAGLTSTRRSFCDDVIGGSGGGGGAGSL
SQQHQFGGEGDMEWPRSVSSSGVPLPRHHRASRYTPGHAGFLRDAAAGAV
AEQRDYGGRPSVLGGPVELQDQYPHRNSRLQHPSDMVGRIGGQESSMRKQ
LQDHEHHHGIGSGHVRPYSAGAVGPGTGGGGNYGIVRRDMPTRSASCRPY
NEHPHPAAALPPSSWDCLGSGEGVAAGAGDGEAYLDWSGSTVPPPSGRRE
LRRWSLQQQQRQQQRWEQQDALDRATGAFAAAWPKDPTRLPQEGWVEDND
IGTRNNHDAAAGFSAWDPGFGDEQLGRPRQQSPPARFRNGVAAVSASTAA
LHAHPRRHSVTEGLVGDEAIRAEVAGGGGGGVGGGGRAGAVFGGAVPIDK
DNGGSCPPGFSAGVTRGYGDGGNGRRWSETGNGMSQQVQGEERGVEVDFG
SLSMADHPRGGRTWGGASSLMPEGGTAPAGDDIVGGLWEGIGAGGLDSQE
RSSSWPNPLLSPGSGGRSPWGT*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1250:7395..14533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1250.1558.1 ID=mRNA_E-siliculosus-1a_F_contig1250.1558.1|Name=mRNA_E-siliculosus-1a_F_contig1250.1558.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7139bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1250:7395..14533+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGAACTCGTTTTTAACGGAAAGGAGAACTGTAGAGAGCGAGTTTTTTCG GGCGGAACGAGCGAGTTCATATTATTGACAGCAAAGAGACGGACTTCCAT ATCACACACGGCGGTCAGAGTCTGATGGCCCCGCGACAAGTCTTCCCGTA CGACGAGTGCGGAGTCCTCCGCACGCCGCGGCAGTTGCTGGCAGAGTCGC AGCAGCAGGAGCAGCAGCATCATCAGAGAGAGCAATGGGCCGAGCTTGAC AAGCCATCGCCCTTTACCCCGACGTTTGATGAGCTAGGAAGCAGCGGAGG CGAGGCGGGCTACGTGCAGCAACCGCACTGCAGCGACCTACGGGACGCGC TGAACGACGACGACGATGACGACGACGACGAGAGCTTGGACTTGGGGGCG GTCTGGGCGAGCCGCGAGTTCGTGCCCAAGCCCGGGGTGGAGATTTTCGT CGGGGGCCTCACCCGCAGCACGCGACGCGACATGCTGCGGGACTGGTTTC AGCATGCCGGGGAAGTGACCGAAGTGCGCATCGCGCGCGACAAGCGGCGC AGGAGGTGCCGCGGGTACGGCTACGTGCGCTTCGCCACGAGCGAGCAGGC AAACCGGGCCATCGACACCATGCACCGCTTCGAGTTCAAGCACGGCAGGT TCCTCGGCGTCTTGCCCTCTGATGAAAATCGCACGCTGTTTGTGGGAGGG CTCCAGGAGGAGTGGAACTGCGCCTACATATGCCAGCTTCTCAAGGAAAA AATGGTGAGATTGTTGGTTCAATTTGGCCCCTTTGAGGCTGTCCTGGCAC GCCGCGTTCGGATGTGCACACCGTGCATCATCTGCGAGGGCCGGAGGCGG CGCCCGTAGGAGCACACCGCAGCGGGGCGTTAGGGCGCTTGTTTTCTGGG ACACACGTGATTATCGCGCCGTCAACAATGGCGCCGTCAACAAGATGTTT TCATTCCTACAGCGGCAGTTTTCCTTGCTCCAAGCGATTGTAATCATCCC GTTGTGCACCACCTCGTCCCTCTCTTTTTCTCTCTCGAGTCTTGCACGAT GCATCGGCAGTTTACCCCTTCTTCTCCCCAGCAAGAATTTAATCCCCCGC CCCGCTAACCACCACGCGTGGGTTGCAACGTACGCATTCCAGCAACGAAA TTATTTGATCTTCGAACAACACTTTCCGCCAAGACTGAAACATTTCGAGC CAGTTTTGGCCGTCAAACTGCCAGCTATTCTGCCCGCTGCCCATCCGGCT AAGTTTGGGTGGTACACGCCGTGCGATGCGATGAAAAAAGCTGCTGTATT GGTCTGGACCATGAATATTATCCGTGCTCACTCATCCCATCTTGTAGTGA GAGGCTGTACGTGTTGATGCGCTACTCATCTATGATATGTTTTTTTTTTG CATGCATGCACACGTGCGCATAATGTGCCTCCAAATGTGGTATGTACATA GGTTGCAGCTGCTGTCGAACGTGTTGCCGTCCTGTGTTGTGGTTGCTGTT GTCGCTGAACGCTCAACACCGTCCCAGTCTCTGCTCTGGACCCTCCAAAC ATCCACACCGGTTCCACCTGACGCAGACGCCGTGGTGGTAGGCCATCTAG ACTGCTTCCGAATAGGTACCGTGTACACGCTCGCGTGGTGATTCGGCCCG CACTTCTCTTGACTTCACTTTTCAAGTACATGGAAGAATACGGAGAGGAA ATAACCGCCGCAGCACAACGCCCATAGCAGCACCACAGAACCATAATGTC GCTGGCTACAAGATATTGGGCGGATGTGTACGATTTTACTAATATTGAAA TTCATGGCGCCCATCAATCCCGCTCGGCACGTAATGTCAAATATAACAAT GCACAACCCGCGGTGCAAACGAAGGGGAGAGGAAAAGAGGAAACGGATTG TTCTTCGTTCTGTCGAACTGCTTCAAGGTATGTAGATGCATACTGAGACA ATAAAAAAGGTGCAAGGGTACTAGACTGCTGCAAAGGTACAGGGGGATAA TGAGCCGCGGGTTACGACTCAATACGTTGGAGTAATCTGTGTGCGATGCT GTGCAAGGCTGCTTTCCGGCAATAACGCAGCAACCTAGAACTAATCTGCT GTAACGAATCGCGCGTTCGCTAGCGGATATGCAAATTGTGTTCGAACGGA TCTTGTGAGACTGCTGCATCCGCTCCCGGACTCGGAAGTTAAAACTTAAA ACACATCCGTTTCGACTGCTGTGGAATTATCTCGAACGGGTATAGTAGAT ATTCCCATCCCCAAACCAAAAACAAAAAACTATCCCTCCCCAACCCAAAA CCATAAACAATTAATACACAAAACACACCCCAACCGCCGATCGATCGGCA CGTAAAAGTACCGACACATGAGACAAATATCGGACGCGTTTTTTCTCATC CTGCTGGGGATGAAAATATGAAAATAAAAAAATGTCACGCTTCGCGCTCC GCGGCTGGTTGTACGGAGGAGTATCTAATCGCGATAGTTTTGGTTCGGTG TGATTCGCTGGGCTCTTCGAGGCCATCAACGTCAACTGCTGTTTTGAGCT TGTCGAGCTTTGTTTCGTCACACCCGATCGATATATGGCAAGCCAGCTGT TCTCAGCGGGCGGTTGTGGTGTTGAGATTGTCACGTCAGCTGCCCAGCTG TCTCCTGCTCTGAACAATCCCAACATTAGGGGCCACCGCGCATGATGCGC TGTACCACCAGTTATGTTTTTCCCATCATGCACCACCCTTGAGGTGGCAC TGCTGTGCTCCCGTGAGTCCTCTTCGGCGGGCATCCTCGAACTTCTTTTG TTGTGTTTTTTTCGTTTTTTCCATCTTGCATCACCGTTGATGTGGCACTG CTGTGCTCTCATGAGCCCTCTTCCATTTAGCCAGCCGTCTTCAAGTTGGG GAGGCAGCACTGTCGATGATAAATTCACGGCAGGTCCTCGAACCCTTTTT TTTTTTGCAAATGCCAGTAATTCGCATGAATCCATCGTTGTTTTGTATCT CTACTTCAGGCTACGGCGGGGAGCACCGGCCGCGGCCTCTGGGGGTTGCT GAGCCTCGATTCCGCACGTGTTGTTGCGCAGACTCACGACGTCGTCAGAA CGACACTACGTGCAGCCCTCGTGTGTGTCCTTCTATCTGAGTGTTCCGGC GTCACATTATCTTAAAACAGGCACACACGCCCGCCGGGTCTCGTTCATAC CAGGGCCGCTTATGCCAGGTCCTGGTAATCAAATAACTCAAGTTACCCTC TCCAAAAACGACTCCACCGCCGTTCCTAGCTTCCGTGTGTTGTTCAAATG TTGAAATTGTTCTTCTGGGGTTGTCCCTTGAACTTACGAAGGCCGAACCC ATCCCTCCCGACACCCCGTTCTCCGGTCTTGCCCTGATCACGCACCGACA GACATGATCTCAGTAACGCGCACTACTTTGTTTCACAAGATTTACCCGCC AATCACCGAAGAGACTACCCGTTGCACATGTTTACGGGTTTTTTTCCGTG GACGTTTCAACCCTCCAGCGTTTACCGTATGCCTCACTCGCGGTTTTTTT CTTGTGCGTGCGCTCCCTCCCTTGCATTATGTTTTGGCTCCGTACCCCGG GAAATACGACGACGACGACGACGACAACAAGCCTGGCTTAAGGAAAGTGG AGCCCATTCCCGACCGGGAGGACAGGTTCAAGATCCGCACCTTCTGCTTC CTGGAGTTTGCTTCCCACGCCGAGGCCGCCGTGATTTTCCACCGGCACCA GACCAGCCCCCGGCCGCCGCAGCCGCCACCTCACCAACAGCCGGCGGCGG CTGCGGCTTCTTCGACGCCGCAAGGCCCGACGACTGAGCTCCCGCTCCCG CCGCCTTCTGCTACGTCGGCCGCCGGGGGAGGCGCGGGCTTGCCTTACGA GCGTGATGCACGGGCGGAGAGCAGCAGCACCACCTGCACCAGCGCCGGTG GCAATGCCGGCGATGGCGGCGGCGAAGAAGCGGGGACGGGGGCGGGGGTA CCACTGGTTGTGGGCGGGGCCACTCTTAAAGTCGACTGGGCGGACCCCCT GCGGTACCACATCCACCTGAACGGGGGCATCAAGGGACCGTCGGCTCCTC CGGAGTTCGGCGTGCAGAACGGTCGTCCGTCTTCTCGCGGCGCCGGCTGC AAGGGGGCTTCTGGGAACGAAGGAGGAGGAGGGGCCTTCCGGGGCGCGGT GGGTTTCGGCGGCGGCGGCGCCTTCCAATCCTGGCCGCAGCAAGAACAGC AGCAGGGCCTGATGAGGCGGTCGTCGCCACCTCCGTTGATCGACCCCAGG CGGCAGGGCGGGGACCACTCGCGCGCCGTGCACGCTCTGGAGCACCAGCA GCTTCTGCAGCAGCGGCACCAGCACCAGCGGCGGCAACAGCAGCAGCAGC AGCAGCAGCAGCAGCCCTATCATCGGCACCACCCGTCCGATTCCCAGCAA CGGACCGCTACGGCACCGGGGGTAAGTGGGGAAAACCGACGCGTTGCAGA CGATGTGCGCGACGTGCGCTTGGTGTTTTTGTACGGTGTTTTGTGTGTGT TGCTTTCGGCGAGCCATGTTCCTGGCTCGTATTTGTTCCGAAGACAGCAG GAGTGGACCCGCAGTTCGGTGGGCTGTTTGGTGGGCTTGGTAAAGCCGTG AGAAAGTCGCCCTCTGACTCGGCCATCGTCTTTGTTTCCCGCCGAAGTAT CTTGATTCTTGTCGACTTTTTTTTTTTTTTTCACAGTGTAGCGTCGACCC CCTCCCTGCTGACCCCCTCCGTGCCATTCATGCGTTCATTGTGCCCCGTG CTCCAGATTATGGCTCTGGACGGGTCTTCAGATCGCCTCGCTCACCACCT GTCACGCAGCGGGTCCTTGCCCGCGGCAACGAGGGAGCGCGGCCACACCA TCGCGGCGGGGCTTACATCCACCCGGAGGTCCTTCTGCGATGACGTGATC GGCGGCAGCGGCGGCGGCGGTGGCGCGGGTTCCCTGTCCCAGCAGCACCA GTTCGGCGGCGAAGGCGACATGGAATGGCCGCGATCGGTCTCGTCGAGCG GCGTGCCGCTCCCCCGCCACCACCGCGCGTCCCGCTACACCCCGGGCCAC GCCGGCTTTCTCCGCGACGCGGCGGCGGGGGCGGTGGCCGAACAGCGGGA CTACGGTGGCCGCCCGAGCGTGCTCGGGGGTCCCGTAGAGTTGCAGGATC AATACCCGCACCGCAACTCTCGGCTGCAGCACCCTTCGGACATGGTCGGA CGAATAGGAGGCCAGGAGAGTTCCATGAGGAAACAGCTTCAGGACCACGA GCATCATCACGGCATCGGCAGCGGGCATGTTCGGCCGTATAGCGCAGGTG CCGTCGGCCCGGGTACCGGCGGCGGCGGTAACTACGGCATCGTCCGCCGC GATATGCCGACGAGGAGCGCCTCTTGCCGCCCCTACAACGAGCATCCGCA CCCCGCAGCGGCATTGCCGCCATCGTCTTGGGATTGCCTCGGGTCTGGGG AAGGGGTCGCCGCCGGCGCAGGTGATGGTGAGGCCTACTTGGATTGGTCC GGCTCCACGGTGCCCCCGCCTTCCGGGCGGAGAGAGCTTCGCAGGTGGTC GCTGCAGCAGCAGCAAAGGCAGCAGCAGCGTTGGGAGCAACAGGACGCCC TTGACCGCGCGACCGGTGCTTTTGCGGCAGCCTGGCCGAAGGTGCGTTCG CGATGATGAGACCTCTATCCGCTGCGCGCTTCGTTGCGTGTGTTTGTTTG TTTTTTTAATTTTTTTTTTGGGTGTTCGTGGTTTTTCTGTATTGTTTCGT TGTTGTTGTTTGTGTTTCAAGTTCTCTCGCACGGGGTACATCAATCGACC GAAGGATTTTCCGGGCTGGATTTTTTTTTGTGGCACACCTTGGCAGTGCC GCCAAGTGCGGTGACTGCCTTCCTGCAAGGTAACCGGCCGTAGTTGCCAT GTGGCCCTGTTCTTTATGATTCGAGGGCTCTCCTACACGCGGTTGGACGG ACTGCTGTGAACCGCGCAACAGCAGCACCACAGCAGCACCACGACTCCAA CATTATACTAGTTTTTTGTTTTTCGAGTGTTTCGGCTTTTGGAATTGTGG ACCCTCTTTTTGGGTAGTCGAACCTTCAAGCAGAGACCGGGACAGCTTTT CTTGGTAGACAATACCAACTACAACAGCATGACTTGTCCGATGCTTTTGA TATGCCGTAGAGCTCGCCGCTCTGCCCAAAGAAAACGAGACGACCACCTT GGGAATCAGCGCTCCCCCCCACTACCACCAGCGTGGGTGTTTTATTTCTC CGTCCACCTTCTAAGCTTCCCGCCGTGGTCCCACTCCCAACGCCCCGTTT CTCCGTTCATGTTCTGCAACTTGAAACCCTTCAGGACCCGACACGCCTGC CCCAGGAAGGTTGGGTCGAAGACAACGACATCGGCACCAGAAACAACCAT GACGCCGCCGCTGGGTTCTCCGCTTGGGATCCGGGGTTCGGGGACGAGCA GCTGGGGCGGCCGCGGCAGCAGTCACCGCCGGCACGGTTCCGGAACGGCG TGGCGGCGGTGTCAGCCTCCACCGCGGCCCTTCACGCGCACCCTCGCCGC CACTCCGTCACGGAAGGGTTGGTCGGCGACGAGGCCATCCGGGCCGAGGT GGCCGGCGGTGGCGGTGGCGGGGTCGGCGGCGGCGGCCGGGCTGGAGCGG TGTTCGGAGGAGCGGTCCCCATCGACAAGGATAACGGTGGCAGCTGTCCG CCCGGGTTCTCGGCCGGGGTGACCCGCGGCTACGGCGACGGTGGCAATGG GCGTCGCTGGAGCGAAACCGGCAACGGCATGTCGCAGCAGGTGCAGGGAG AAGAGAGAGGCGTGGAGGTTGACTTTGGAAGCCTTTCCATGGCCGACCAC CCTCGCGGTGGCCGCACTTGGGGCGGCGCGTCGTCGCTCATGCCTGAAGG CGGCACCGCCCCCGCTGGCGATGATATCGTCGGAGGCCTCTGGGAGGGCA TCGGGGCGGGAGGACTGGACAGCCAGGAGCGGTCATCATCGTGGCCGAAC CCGCTTCTTTCTCCCGGTTCGGGAGGTCGCAGCCCGTGGGGTACGTAAAA CCACACGGAGCGATGAGTTCAGGGGGGGGGGGGGGGGGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1250:7395..14533+

>mRNA_E-siliculosus-1a_F_contig1250.1558.1 ID=mRNA_E-siliculosus-1a_F_contig1250.1558.1|Name=mRNA_E-siliculosus-1a_F_contig1250.1558.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6138bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1250:7395..14533+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCCCGCGACAAGTCTTCCCGTACGACGAGTGCGGAGTCCTCCGCAC
GCCGCGGCAGTTGCTGGCAGAGTCGCAGCAGCAGGAGCAGCAGCATCATC
AGAGAGAGCAATGGGCCGAGCTTGACAAGCCATCGCCCTTTACCCCGACG
TTTGATGAGCTAGGAAGCAGCGGAGGCGAGGCGGGCTACGTGCAGCAACC
GCACTGCAGCGACCTACGGGACGCGCTGAACGACGACGACGATGACGACG
ACGACGAGAGCTTGGACTTGGGGGCGGTCTGGGCGAGCCGCGAGTTCGTG
CCCAAGCCCGGGGTGGAGATTTTCGTCGGGGGCCTCACCCGCAGCACGCG
ACGCGACATGCTGCGGGACTGGTTTCAGCATGCCGGGGAAGTGACCGAAG
TGCGCATCGCGCGCGACAAGCGGCGCAGGAGGTGCCGCGGGTACGGCTAC
GTGCGCTTCGCCACGAGCGAGCAGGCAAACCGGGCCATCGACACCATGCA
CCGCTTCGAGTTCAAGCACGGCAGGTTCCTCGGCGTCTTGCCCTCTGATG
AAAATCGCACGCTGTTTGTGGGAGGGCTCCAGGAGGAGTGGAACTGCGCC
TACATATGCCAGCTTCTCAAGGAAAAAATGATGGCCCCGCGACAAGTCTT
CCCGTACGACGAGTGCGGAGTCCTCCGCACGCCGCGGCAGTTGCTGGCAG
AGTCGCAGCAGCAGGAGCAGCAGCATCATCAGAGAGAGCAATGGGCCGAG
CTTGACAAGCCATCGCCCTTTACCCCGACGTTTGATGAGCTAGGAAGCAG
CGGAGGCGAGGCGGGCTACGTGCAGCAACCGCACTGCAGCGACCTACGGG
ACGCGCTGAACGACGACGACGATGACGACGACGACGAGAGCTTGGACTTG
GGGGCGGTCTGGGCGAGCCGCGAGTTCGTGCCCAAGCCCGGGGTGGAGAT
TTTCGTCGGGGGCCTCACCCGCAGCACGCGACGCGACATGCTGCGGGACT
GGTTTCAGCATGCCGGGGAAGTGACCGAAGTGCGCATCGCGCGCGACAAG
CGGCGCAGGAGGTGCCGCGGGTACGGCTACGTGCGCTTCGCCACGAGCGA
GCAGGCAAACCGGGCCATCGACACCATGCACCGCTTCGAGTTCAAGCACG
GCAGGTTCCTCGGCGTCTTGCCCTCTGATGAAAATCGCACGCTGTTTGTG
GGAGGGCTCCAGGAGGAGTGGAACTGCGCCTACATATGCCAGCTTCTCAA
GGAAAAAATGCCTGGCTTAAGGAAAGTGGAGCCCATTCCCGACCGGGAGG
ACAGGTTCAAGATCCGCACCTTCTGCTTCCTGGAGTTTGCTTCCCACGCC
GAGGCCGCCGTGATTTTCCACCGGCACCAGACCAGCCCCCGGCCGCCGCA
GCCGCCACCTCACCAACAGCCGGCGGCGGCTGCGGCTTCTTCGACGCCGC
AAGGCCCGACGACTGAGCTCCCGCTCCCGCCGCCTTCTGCTACGTCGGCC
GCCGGGGGAGGCGCGGGCTTGCCTTACGAGCGTGATGCACGGGCGGAGAG
CAGCAGCACCACCTGCACCAGCGCCGGTGGCAATGCCGGCGATGGCGGCG
GCGAAGAAGCGGGGACGGGGGCGGGGGTACCACTGGTTGTGGGCGGGGCC
ACTCTTAAAGTCGACTGGGCGGACCCCCTGCGGTACCACATCCACCTGAA
CGGGGGCATCAAGGGACCGTCGGCTCCTCCGGAGTTCGGCGTGCAGAACG
GTCGTCCGTCTTCTCGCGGCGCCGGCTGCAAGGGGGCTTCTGGGAACGAA
GGAGGAGGAGGGGCCTTCCGGGGCGCGGTGGGTTTCGGCGGCGGCGGCGC
CTTCCAATCCTGGCCGCAGCAAGAACAGCAGCAGGGCCTGATGAGGCGGT
CGTCGCCACCTCCGTTGATCGACCCCAGGCGGCAGGGCGGGGACCACTCG
CGCGCCGTGCACGCTCTGGAGCACCAGCAGCTTCTGCAGCAGCGGCACCA
GCACCAGCGGCGGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCCTATC
ATCGGCACCACCCGTCCGATTCCCAGCAACGGACCGCTACGGCACCGGGG
CCTGGCTTAAGGAAAGTGGAGCCCATTCCCGACCGGGAGGACAGGTTCAA
GATCCGCACCTTCTGCTTCCTGGAGTTTGCTTCCCACGCCGAGGCCGCCG
TGATTTTCCACCGGCACCAGACCAGCCCCCGGCCGCCGCAGCCGCCACCT
CACCAACAGCCGGCGGCGGCTGCGGCTTCTTCGACGCCGCAAGGCCCGAC
GACTGAGCTCCCGCTCCCGCCGCCTTCTGCTACGTCGGCCGCCGGGGGAG
GCGCGGGCTTGCCTTACGAGCGTGATGCACGGGCGGAGAGCAGCAGCACC
ACCTGCACCAGCGCCGGTGGCAATGCCGGCGATGGCGGCGGCGAAGAAGC
GGGGACGGGGGCGGGGGTACCACTGGTTGTGGGCGGGGCCACTCTTAAAG
TCGACTGGGCGGACCCCCTGCGGTACCACATCCACCTGAACGGGGGCATC
AAGGGACCGTCGGCTCCTCCGGAGTTCGGCGTGCAGAACGGTCGTCCGTC
TTCTCGCGGCGCCGGCTGCAAGGGGGCTTCTGGGAACGAAGGAGGAGGAG
GGGCCTTCCGGGGCGCGGTGGGTTTCGGCGGCGGCGGCGCCTTCCAATCC
TGGCCGCAGCAAGAACAGCAGCAGGGCCTGATGAGGCGGTCGTCGCCACC
TCCGTTGATCGACCCCAGGCGGCAGGGCGGGGACCACTCGCGCGCCGTGC
ACGCTCTGGAGCACCAGCAGCTTCTGCAGCAGCGGCACCAGCACCAGCGG
CGGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCCTATCATCGGCACCA
CCCGTCCGATTCCCAGCAACGGACCGCTACGGCACCGGGGATTATGGCTC
TGGACGGGTCTTCAGATCGCCTCGCTCACCACCTGTCACGCAGCGGGTCC
TTGCCCGCGGCAACGAGGGAGCGCGGCCACACCATCGCGGCGGGGCTTAC
ATCCACCCGGAGGTCCTTCTGCGATGACGTGATCGGCGGCAGCGGCGGCG
GCGGTGGCGCGGGTTCCCTGTCCCAGCAGCACCAGTTCGGCGGCGAAGGC
GACATGGAATGGCCGCGATCGGTCTCGTCGAGCGGCGTGCCGCTCCCCCG
CCACCACCGCGCGTCCCGCTACACCCCGGGCCACGCCGGCTTTCTCCGCG
ACGCGGCGGCGGGGGCGGTGGCCGAACAGCGGGACTACGGTGGCCGCCCG
AGCGTGCTCGGGGGTCCCGTAGAGTTGCAGGATCAATACCCGCACCGCAA
CTCTCGGCTGCAGCACCCTTCGGACATGGTCGGACGAATAGGAGGCCAGG
AGAGTTCCATGAGGAAACAGCTTCAGGACCACGAGCATCATCACGGCATC
GGCAGCGGGCATGTTCGGCCGTATAGCGCAGGTGCCGTCGGCCCGGGTAC
CGGCGGCGGCGGTAACTACGGCATCGTCCGCCGCGATATGCCGACGAGGA
GCGCCTCTTGCCGCCCCTACAACGAGCATCCGCACCCCGCAGCGGCATTG
CCGCCATCGTCTTGGGATTGCCTCGGGTCTGGGGAAGGGGTCGCCGCCGG
CGCAGGTGATGGTGAGGCCTACTTGGATTGGTCCGGCTCCACGGTGCCCC
CGCCTTCCGGGCGGAGAGAGCTTCGCAGGTGGTCGCTGCAGCAGCAGCAA
AGGCAGCAGCAGCGTTGGGAGCAACAGGACGCCCTTGACCGCGCGACCGG
TGCTTTTGCGGCAGCCTGGCCGAAGATTATGGCTCTGGACGGGTCTTCAG
ATCGCCTCGCTCACCACCTGTCACGCAGCGGGTCCTTGCCCGCGGCAACG
AGGGAGCGCGGCCACACCATCGCGGCGGGGCTTACATCCACCCGGAGGTC
CTTCTGCGATGACGTGATCGGCGGCAGCGGCGGCGGCGGTGGCGCGGGTT
CCCTGTCCCAGCAGCACCAGTTCGGCGGCGAAGGCGACATGGAATGGCCG
CGATCGGTCTCGTCGAGCGGCGTGCCGCTCCCCCGCCACCACCGCGCGTC
CCGCTACACCCCGGGCCACGCCGGCTTTCTCCGCGACGCGGCGGCGGGGG
CGGTGGCCGAACAGCGGGACTACGGTGGCCGCCCGAGCGTGCTCGGGGGT
CCCGTAGAGTTGCAGGATCAATACCCGCACCGCAACTCTCGGCTGCAGCA
CCCTTCGGACATGGTCGGACGAATAGGAGGCCAGGAGAGTTCCATGAGGA
AACAGCTTCAGGACCACGAGCATCATCACGGCATCGGCAGCGGGCATGTT
CGGCCGTATAGCGCAGGTGCCGTCGGCCCGGGTACCGGCGGCGGCGGTAA
CTACGGCATCGTCCGCCGCGATATGCCGACGAGGAGCGCCTCTTGCCGCC
CCTACAACGAGCATCCGCACCCCGCAGCGGCATTGCCGCCATCGTCTTGG
GATTGCCTCGGGTCTGGGGAAGGGGTCGCCGCCGGCGCAGGTGATGGTGA
GGCCTACTTGGATTGGTCCGGCTCCACGGTGCCCCCGCCTTCCGGGCGGA
GAGAGCTTCGCAGGTGGTCGCTGCAGCAGCAGCAAAGGCAGCAGCAGCGT
TGGGAGCAACAGGACGCCCTTGACCGCGCGACCGGTGCTTTTGCGGCAGC
CTGGCCGAAGGACCCGACACGCCTGCCCCAGGAAGGTTGGGTCGAAGACA
ACGACATCGGCACCAGAAACAACCATGACGCCGCCGCTGGGTTCTCCGCT
TGGGATCCGGGGTTCGGGGACGAGCAGCTGGGGCGGCCGCGGCAGCAGTC
ACCGCCGGCACGGTTCCGGAACGGCGTGGCGGCGGTGTCAGCCTCCACCG
CGGCCCTTCACGCGCACCCTCGCCGCCACTCCGTCACGGAAGGGTTGGTC
GGCGACGAGGCCATCCGGGCCGAGGTGGCCGGCGGTGGCGGTGGCGGGGT
CGGCGGCGGCGGCCGGGCTGGAGCGGTGTTCGGAGGAGCGGTCCCCATCG
ACAAGGATAACGGTGGCAGCTGTCCGCCCGGGTTCTCGGCCGGGGTGACC
CGCGGCTACGGCGACGGTGGCAATGGGCGTCGCTGGAGCGAAACCGGCAA
CGGCATGTCGCAGCAGGTGCAGGGAGAAGAGAGAGGCGTGGAGGTTGACT
TTGGAAGCCTTTCCATGGCCGACCACCCTCGCGGTGGCCGCACTTGGGGC
GGCGCGTCGTCGCTCATGCCTGAAGGCGGCACCGCCCCCGCTGGCGATGA
TATCGTCGGAGGCCTCTGGGAGGGCATCGGGGCGGGAGGACTGGACAGCC
AGGAGCGGTCATCATCGTGGCCGAACCCGCTTCTTTCTCCCGGTTCGGGA
GGTCGCAGCCCGTGGGGTACGTAAGACCCGACACGCCTGCCCCAGGAAGG
TTGGGTCGAAGACAACGACATCGGCACCAGAAACAACCATGACGCCGCCG
CTGGGTTCTCCGCTTGGGATCCGGGGTTCGGGGACGAGCAGCTGGGGCGG
CCGCGGCAGCAGTCACCGCCGGCACGGTTCCGGAACGGCGTGGCGGCGGT
GTCAGCCTCCACCGCGGCCCTTCACGCGCACCCTCGCCGCCACTCCGTCA
CGGAAGGGTTGGTCGGCGACGAGGCCATCCGGGCCGAGGTGGCCGGCGGT
GGCGGTGGCGGGGTCGGCGGCGGCGGCCGGGCTGGAGCGGTGTTCGGAGG
AGCGGTCCCCATCGACAAGGATAACGGTGGCAGCTGTCCGCCCGGGTTCT
CGGCCGGGGTGACCCGCGGCTACGGCGACGGTGGCAATGGGCGTCGCTGG
AGCGAAACCGGCAACGGCATGTCGCAGCAGGTGCAGGGAGAAGAGAGAGG
CGTGGAGGTTGACTTTGGAAGCCTTTCCATGGCCGACCACCCTCGCGGTG
GCCGCACTTGGGGCGGCGCGTCGTCGCTCATGCCTGAAGGCGGCACCGCC
CCCGCTGGCGATGATATCGTCGGAGGCCTCTGGGAGGGCATCGGGGCGGG
AGGACTGGACAGCCAGGAGCGGTCATCATCGTGGCCGAACCCGCTTCTTT
CTCCCGGTTCGGGAGGTCGCAGCCCGTGGGGTACGTAA
back to top