mRNA_E-siliculosus-1a_F_contig1249.1548.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1548.1 vs. uniprot
Match: D8LHL4_ECTSI (DUF3342 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL4_ECTSI) HSP 1 Score: 481 bits (1237), Expect = 2.380e-157 Identity = 286/314 (91.08%), Postives = 291/314 (92.68%), Query Frame = 2
Query: 2 LDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEKVRDVMSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCREVFLAGDIGHCRSHPQQAFFPGDSGCGSSTTXXXXXXISGEEQGGVGVGAADGYYPCCKSPVNRFSLEPPPLGCVSLDHVVRDADEDPLVLRVLQLQRANISYQARDWRNAVHEETSAAVKSAVGSGSDGGGAYSXXXXXXXXXXXXXXXXXXXXXXXXXXXNYGSRGNSGGGDGVRGXXXXXGS--GIVSTDKMPA 937
LDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCR+CAGLFSEKVRDVMSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCREVFLAGDIGHCRSHPQQAFFPGDSGCGSSTTXXXXXXISGEE+GGVGVGAADGYYPCC+SPVNRFSLEPPPLGCVSLDHVVRDADEDPLVLRVLQLQRANISYQ DWR+AV+EET A VKSAVG GSDG XXXXXXXXXXXXXXXXXXXXXXXXXXX SRGNS GGD VRG XXXX GIV TDK A
Sbjct: 461 LDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRYCAGLFSEKVRDVMSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCREVFLAGDIGHCRSHPQQAFFPGDSGCGSSTTXXXXXXISGEERGGVGVGAADGYYPCCQSPVNRFSLEPPPLGCVSLDHVVRDADEDPLVLRVLQLQRANISYQ--DWRDAVNEETRAVVKSAVGPGSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGNSSGGDRVRGGXXXXXXXFGIVGTDKAAA 772
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1548.1 vs. uniprot
Match: A0A835YQX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX4_9STRA) HSP 1 Score: 171 bits (432), Expect = 2.620e-41 Identity = 108/287 (37.63%), Postives = 144/287 (50.17%), Query Frame = 2
Query: 2 LDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEKVRD-----------------------------VMSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCREVFLAGDI-----GHCRSH---PQQAF--FPGDSGCG------SSTTXXXXXXISGEEQGGV---------GVGAADGYYPCCKSPVNRFSLEPPPLGCVSLDHVVR-DADEDPLVLRVLQLQRANISYQARDWRNAVHEE 697
L +LA A+DR+DKLLSRV KKR+E+++RDRS D A+ CCRHCA L++E+ ++C APP V RG+L+RRH P PWSLT V +LH +GM+WT VYW LWG T+ L C RC E F A + R H P+ ++ F + C +S T I+ + GG GA +G + CC++ RFSL+ GC DHV DA E L +L LQR +I+ A WR A+ EE
Sbjct: 287 LRELAAARDRRDKLLSRVFKKRLEVEYRDRS--GDRAVRCCRHCAALYTERPHGSGSXXXXXXXXXXXXXXXXXXXXXXXXXXALTCARAPPLVDARGRLVRRHAPARPWSLTALVAALHARGMTWTEVYWLLWGATRTLRCRRCGEAFTASERKSNAESRLRPHAFTPESSYAVFETAASCRLASPSIASLTRARALPIAPRQIGGCRHHPGRAAYAAGACEGRWSCCRAAAARFSLDTAAPGCAVTDHVPEEDAPESAEALALLPLQRRSIT--AEGWREAIAEE 569
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1548.1 vs. uniprot
Match: A0A6H5K7D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D3_9PHAE) HSP 1 Score: 146 bits (368), Expect = 2.640e-38 Identity = 70/92 (76.09%), Postives = 75/92 (81.52%), Query Frame = 2
Query: 80 FRDRSPHSDNAIHCCRHCAGL-FSEKVRDVMSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCR 352
R R P+ + C R + +VRD+MSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCR
Sbjct: 1 MRRRLPNGNPKRQCNRKLQSYNTTRQVRDMMSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCR 92
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1548.1 vs. uniprot
Match: A0A7S2SHR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHR3_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.180e-30 Identity = 70/196 (35.71%), Postives = 101/196 (51.53%), Query Frame = 2
Query: 23 KDRKDKLLSRVHKKRIEIDFRD-----RSPHSDNAIHCCRHCAGLFSEKVRDVMSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCREVFLAGDIGHCRSHPQQAFFPGDSGCGSSTTXXXXXXISGEEQGGVGVGAADGYYPCCKSPVNRFSLEPPPLGCVSLDHVV 595
KD+KDKL+S+++K+R+EIDFR+ + + I CCR C LF D++ C AP V FRG ++ RH PL WSLT V+ LH+ GMSW +YW LWG++ YC R F+A ++ H R HP++ G+ V +YPCC P F++ +GC ++H V
Sbjct: 306 KDKKDKLMSKLYKRRLEIDFRNPPLDSKKRQGYSKICCCRWCGRLFHFGAMDILDCPRAPSAVDFRGAVISRHMPLEIWSLTECVSRLHKNGMSWEEIYWLLWGVSHIFYCSESRRNFMALELSHRRHHPEKP------------------------SAGLDVRNPSLHYPCCSEPALLFNVADVCIGCCYMEHEV 477
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1548.1 vs. uniprot
Match: A0A7S3ZMG3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMG3_9STRA) HSP 1 Score: 127 bits (318), Expect = 6.370e-27 Identity = 78/227 (34.36%), Postives = 99/227 (43.61%), Query Frame = 2
Query: 26 DRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEKVRDVMSCRAAPPTVSFRGQLLRRHEPLSP-WSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCREVFLAGDIGHCRSHPQQAFFPGDSGCGSSTTXXXXXXISGEEQGGVGVGAADGYYPCCKSPVNRFSLEPPPLGCVSLDHVVR--DADEDPLVLRVLQLQRANISYQARDWRNAVHEE 697
D KDKLL +++K+R+E+DFR S + I CRHC L+ + +SC APP + RG L RHEP+ WSLT V LH GM W VYW +W T C C E F A D+ +CR HP F D A G Y CC + RF+ GC + H V D P L +L+ RDW V +E
Sbjct: 257 DAKDKLLPKLYKRRLELDFRHSSKANKRDILKCRHCDRLYPAWAQTKLSCAKAPPRIDRRGHLCLRHEPVEERWSLTEYVGELHAAGMPWEEVYWTMWAATHIFRCTACDEWFGAADMENCRHHPGPQEFTDDH-------------------------ALRGKYACCGAECLRFAAGAVAKGCAARRHAVSSIDGSASPQTLALLE---------KRDWARTVEQE 449
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1548.1 vs. uniprot
Match: A0A7S1XVF4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVF4_9STRA) HSP 1 Score: 119 bits (297), Expect = 4.550e-24 Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 2
Query: 11 LAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEKVRDVMSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCREVFL-AGDIGHCRS 391
LA +D++DKLLS+++KKRIE+DFR+R ++I CR+C F+ K + C AAP +V F G L+ RH P WSLT+ V LH KG+SW +YW+LWGLT C C F AG C++
Sbjct: 444 LAYTRDKRDKLLSKLYKKRIEMDFRERQKGVPHSISACRYCLQPFATKSEAQLRCPAAPISVDFAGGLVARHAPAGGWSLTKFVGGLHNKGISWERIYWYLWGLTHHFNCSACGLTFNGAGAANLCQA 571
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1548.1 vs. uniprot
Match: A0A7R9U8L3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8L3_9STRA) HSP 1 Score: 102 bits (253), Expect = 2.710e-22 Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 2
Query: 11 LAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEKVRDVMSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLW 316
LA AKD++DKLLS+++KKRIE+DFR+R ++I CR+C F+ K C + P + F G ++ +H P + WSLT+ V LH K +SW +YW+LW
Sbjct: 2 LAYAKDKRDKLLSKLYKKRIEMDFRERHKGLPHSISACRYCLVPFATKSEAAHRCPSVPLAIDFAGDVVGKHAPATKWSLTKFVAGLHSKNVSWEEIYWYLW 103
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1548.1 vs. uniprot
Match: F0YN17_AURAN (DUF3342 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN17_AURAN) HSP 1 Score: 111 bits (277), Expect = 8.330e-22 Identity = 82/263 (31.18%), Postives = 107/263 (40.68%), Query Frame = 2
Query: 11 LAVAKDRKDKLLSRVHKKRIEIDFRDR--------------------------------SPHS--------DNAIHCCRHCAGLFSEKVRDVMSCRAAPPTVSFRGQLLRRHEP-LSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCREVFLAGDIGHCRSHPQQAFFPGDSGCGSSTTXXXXXXISGEEQGGVGVGAADGYYPCCKSPVNRFSLEPPPLGCVSLDHVV--RDADEDPLVLRVLQLQRANISYQAR 670
LA D+KDKLL +++K+R+EIDFR R +P S I CRHCA L+ + + C AP V RG L RH P L WSLT V +LH GM+W VYW +WG+T C C + F A D+G C H ++ F D G Y CC +P RFS GC +H + R P LR+LQ Q I++ A+
Sbjct: 142 LASLSDKKDKLLPKLYKRRLEIDFRHRHAEARKDRDAKEPDKKPGAKRDGDEKKDGDLRAPASGGPSEKPVSREILRCRHCAKLYPAWAQKWLPCADAPFLVDGRGALASRHAPVLERWSLTEHVGALHALGMTWEEVYWLMWGVTHVFRCSACAKWFGADDLGRCLYHEERPHFADDF-------------------------RMHGAYGCCGAPCLRFSAYADVAGCRCREHRIDPRRGSAKPSTLRLLQRQGKLIAHAAK 379
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1548.1 vs. uniprot
Match: A0A6H5K1Y3_9PHAE (DUF3342 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Y3_9PHAE) HSP 1 Score: 100 bits (249), Expect = 6.390e-19 Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 2
Query: 2 LDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEK 154
LDQLAVAKDRKDKLLSRVHKKRIEIDF DRSPHSD+A+HCCRHC GLFSEK
Sbjct: 377 LDQLAVAKDRKDKLLSRVHKKRIEIDFCDRSPHSDSAVHCCRHCGGLFSEK 427
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1548.1 vs. uniprot
Match: UPI001CFDBA90 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFDBA90) HSP 1 Score: 96.3 bits (238), Expect = 4.260e-17 Identity = 54/199 (27.14%), Postives = 95/199 (47.74%), Query Frame = 2
Query: 23 KDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEKVRDVMSCRA--APPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWGLTQPLYCVRCREVFLAGDIGHCRSHPQQAFFPGDSGCGSSTTXXXXXXISGEEQGGVGVGAADGYYPCCKSPVNRFSLEP-PPLGCVSLDHVVRDADE 610
KD+KDK+LS++ K++E+ + +N ++ C+HC +F++ + M C + A + F G+ + RH W++ + L + GMSW +YW W LT +C+ C++ F+A + HC H ++A F E+G + G +PCC + +F+ P GC S H + + E
Sbjct: 281 KDKKDKILSKLFMKKLEMLLEE----EENTLYKCQHCQTMFTKSQLEWMICNSEKAKIQIDFHGRAISRHALDKTWNVDKYFYKLKKSGMSWRDIYWRFWSLTHSYFCLSCKQHFVAAEYHHCTYHKKEAVF---------------------ERGSI-----VGEHPCCGAKSLKFNSGIIVPKGCCSKSHTIFENQE 449 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1249.1548.1 >prot_E-siliculosus-1a_F_contig1249.1548.1 ID=prot_E-siliculosus-1a_F_contig1249.1548.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1548.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=508bp MSCRAAPPTVSFRGQLLRRHEPLSPWSLTRTVTSLHRKGMSWTAVYWFLWback to top mRNA from alignment at E-siliculosus-1a_F_contig1249:21781..29928+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1249.1548.1 ID=mRNA_E-siliculosus-1a_F_contig1249.1548.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1548.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8148bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1249:21781..29928+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1249:21781..29928+ >mRNA_E-siliculosus-1a_F_contig1249.1548.1 ID=mRNA_E-siliculosus-1a_F_contig1249.1548.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1548.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3048bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1249:21781..29928+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |