mRNA_E-siliculosus-1a_F_contig10143.153.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10143.153.1
Unique NamemRNA_E-siliculosus-1a_F_contig10143.153.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10143.153.1 vs. uniprot
Match: D8LEC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC0_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 1.410e-71
Identity = 147/178 (82.58%), Postives = 156/178 (87.64%), Query Frame = 1 
Query:  142 FNVQTEASALQRLGMLSLNAALMKEEGKTEKAERDLVTCRAKYEECRSSLQLAREQMARDSAQGEAVEEAARTAATRGNETRPQAQQQQVPHGSHASTASDAELDEEGFGLKHMKEAMLRSLEEESKQDGGRDPQHGKVSSAPWAKATAAPGKRXXXXXXXXXXXTASTNRWAVFAED 675
            FNVQT+   LQRLGM SLNAALMKEEGKTEKAERD+ TCRAKYEECRSSLQ AREQMARDSAQ EAV+EAAR AAT+G ET PQAQ+QQV  GSHASTASDA+LDEEGFGL+HM++AMLRSLEEE KQDG  DPQ GKVSSAP AKA AAP  RXXXXXXXXX  TASTNRWAVFAED
Sbjct:  191 FNVQTQ---LQRLGMRSLNAALMKEEGKTEKAERDMATCRAKYEECRSSLQSAREQMARDSAQAEAVKEAARKAATQGKETGPQAQKQQVAQGSHASTASDAKLDEEGFGLQHMEQAMLRSLEEEVKQDGVCDPQQGKVSSAPRAKAIAAPA-RXXXXXXXXXLPTASTNRWAVFAED 364
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BLAST of mRNA_E-siliculosus-1a_F_contig10143.153.1 vs. uniprot
Match: A0A6H5K864_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K864_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.070e-26
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:  337 AVEEAARTAATRGNETRPQAQQQQVPHGSHASTASDAELDEEGFGLKHMKEAMLRSLEEESKQDGGRDPQHGKVS 561
            AVEEAAR  AT+G ET PQAQQQQ+P GSHASTASDA+L +EGFGL+HM+EAMLRS+EE SKQDGGR+PQ GKVS
Sbjct:   36 AVEEAARKGATQGKETGPQAQQQQLPQGSHASTASDAKLGKEGFGLRHMEEAMLRSMEE-SKQDGGRNPQQGKVS 109
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BLAST of mRNA_E-siliculosus-1a_F_contig10143.153.1 vs. uniprot
Match: A0A6H5KTB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.410e-18
Identity = 63/147 (42.86%), Postives = 77/147 (52.38%), Query Frame = 1 
Query:    4 RLQTARSACYEYHLEGIQNRQDAYRASIALAQAEHDLQKMTQVVAR-------------------------------------------------FNVQTEASALQRLGMLSLNAALMKEEGKTEKAERDLVTCRAKYEECRSSLQL 297
            RLQTARSACYE+ L  ++NR D+++A   LA+ + DL   T++  R                                                 FNVQT+ASA QRL ML LNAAL+KEEGKTEKAERDL TCRAKYE  R++L L
Sbjct:   19 RLQTARSACYEFQLAVVENRADSHKAGADLARVKTDLPTKTKLFRRTEAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNVQTQASAPQRLRMLCLNAALVKEEGKTEKAERDLATCRAKYE--RATLTL 163
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BLAST of mRNA_E-siliculosus-1a_F_contig10143.153.1 vs. uniprot
Match: D8LEC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC9_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.500e-5
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  169 LQRLGMLSLNAALMKEEGKTEKAERDLVTCRAKYE 273
            LQRLGML LN A++KEE KT+KAERDL TCRAKY+
Sbjct:  112 LQRLGMLFLNGAIIKEEEKTKKAERDLATCRAKYD 146
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10143.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEC0_ECTSI1.410e-7182.58Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K864_9PHAE8.070e-2678.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTB2_9PHAE5.410e-1842.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEC9_ECTSI1.500e-577.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10143contigE-siliculosus-1a_F_contig10143:609..2591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size831
Model size831
Exons5
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10143.153.1prot_E-siliculosus-1a_F_contig10143.153.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10143 609..2591 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.8939738-CDS-E-siliculosus-1a_F_contig10143:608..7241622927516.8939738-CDS-E-siliculosus-1a_F_contig10143:608..724Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10143 609..724 -
1696318563.8113153-CDS-E-siliculosus-1a_F_contig10143:608..7241696318563.8113153-CDS-E-siliculosus-1a_F_contig10143:608..724Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10143 609..724 -
1622927516.9072585-CDS-E-siliculosus-1a_F_contig10143:987..11031622927516.9072585-CDS-E-siliculosus-1a_F_contig10143:987..1103Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10143 988..1103 -
1696318563.8188527-CDS-E-siliculosus-1a_F_contig10143:987..11031696318563.8188527-CDS-E-siliculosus-1a_F_contig10143:987..1103Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10143 988..1103 -
1622927516.920383-CDS-E-siliculosus-1a_F_contig10143:1518..18441622927516.920383-CDS-E-siliculosus-1a_F_contig10143:1518..1844Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10143 1519..1844 -
1696318563.8261218-CDS-E-siliculosus-1a_F_contig10143:1518..18441696318563.8261218-CDS-E-siliculosus-1a_F_contig10143:1518..1844Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10143 1519..1844 -
1622927516.934872-CDS-E-siliculosus-1a_F_contig10143:2144..22491622927516.934872-CDS-E-siliculosus-1a_F_contig10143:2144..2249Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10143 2145..2249 -
1696318563.8333015-CDS-E-siliculosus-1a_F_contig10143:2144..22491696318563.8333015-CDS-E-siliculosus-1a_F_contig10143:2144..2249Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10143 2145..2249 -
1622927516.9484208-CDS-E-siliculosus-1a_F_contig10143:2423..25911622927516.9484208-CDS-E-siliculosus-1a_F_contig10143:2423..2591Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10143 2424..2591 -
1696318563.8405666-CDS-E-siliculosus-1a_F_contig10143:2423..25911696318563.8405666-CDS-E-siliculosus-1a_F_contig10143:2423..2591Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10143 2424..2591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10143.153.1

>prot_E-siliculosus-1a_F_contig10143.153.1 ID=prot_E-siliculosus-1a_F_contig10143.153.1|Name=mRNA_E-siliculosus-1a_F_contig10143.153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=277bp
ARLQTARSACYEYHLEGIQNRQDAYRASIALAQAEHDLQKMTQVVARFNV
QTEASALQRLGMLSLNAALMKEEGKTEKAERDLVTCRAKYEECRSSLQLA
REQMARDSAQGEAVEEAARTAATRGNETRPQAQQQQVPHGSHASTASDAE
LDEEGFGLKHMKEAMLRSLEEESKQDGGRDPQHGKVSSAPWAKATAAPGK
RRRREKKEEPPPTASTNRWAVFAEDEDDDDEDEGKGAEGATPADVTPAMS
PPGRGRTRGKSPSPSRRRANNERQDS*
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mRNA from alignment at E-siliculosus-1a_F_contig10143:609..2591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10143.153.1 ID=mRNA_E-siliculosus-1a_F_contig10143.153.1|Name=mRNA_E-siliculosus-1a_F_contig10143.153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1983bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10143:609..2591- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCGTCTGCAGACGGCACGCTCGGCCTGCTACGAGTATCACCTGGAGGG
AATCCAGAACCGGCAAGACGCCTACCGGGCGAGCATTGCGTTGGCGCAAG
CCGAGCACGACCTGCAGAAAATGACCCAGGTGGTAGCCCGGTTCAACGTC
CAGACCGAGGCAAGTGCTGTGACAAGAGTCTCATACGTTCTGATTAGTTG
TGTTGTTCAGCTGAGCGGAAACTATTCATGAAACCTCATATTGGTACACA
GACTACATAGGCATGTTACATACCTGACGTCGTTTGTCGCCGGCCACAAA
TCCCCCTGCCCGCCCCCCCAACCTTCCAACCCTGCCCTACAGCTCCAGCG
CTTAGGGATGCTTTCCCTAAACGCCGCATTGATGAAGGAGGAAGGGAAGA
CGGAAAAGGCGGAACGTGACTTGGTTACGTGCCGTGCCAAGTACGAGGTA
CGCGCACGCTCTGAAACGAAAGTATCTTACTGCACAACGTAGTAGGGACC
CGCACGCACGACGCCGATTATGCTGGCCCCGATAGAACACAGCCGTGATG
ATCAGACGATACGTGGTGAGAATGATTTGTGCATCTCTCGGTGAAACTTG
TACAGCACAACTTTGCATGACTGATGTGTAGTCTATGCTAACAGTATGCT
CCTCTACACATAGTCTAAGCTACCATGTAACGTCTTCCCCAAGTGTTACA
GGTTGCAAGTAACACTCCACTCTTCACCCCTCTCCGGCGCTTGTCAGGAA
TGTCGGTCCTCGCTGCAGTTGGCGAGGGAGCAGATGGCGAGGGATTCTGC
TCAGGGGGAGGCGGTCGAGGAGGCCGCCCGCACGGCGGCAACCCGGGGGA
ACGAGACGCGGCCTCAAGCCCAGCAGCAGCAAGTTCCCCACGGCTCCCAC
GCGTCCACGGCCAGCGACGCCGAGCTGGACGAGGAAGGGTTCGGCCTGAA
GCACATGAAGGAGGCGATGCTTCGGTCTTTGGAGGAGGAGTCCAAGCAGG
ACGGGGGGCGTGACCCGCAACATGGGAAGGTTTCATCAGCACCGTGGGCA
AAGGCGACAGCAGCACCGGGTAAGTACATGCATCGTTGCTCGAAGTATGA
ATATCGCAATCAACCTTTCTTTGTAGGCTCAAACCACACCTTGTCGCCAA
GGGGCCCTGAACGCAGCTCCCTGATACTGTGGGGTATCCACGGGAGGGCG
AGCACCGGTCGTACGTAGCGAAGCGAGTGAATCATTCGACGTACTCAAGA
GTTCTCGACGGAATCTAGAAGGAAGCAAACCGGTTGGACGAGGCCGACCG
CAGCCACCAGTGTGCCGTCGAAGTCAAACATGTGGCAGAACGCCCTGTAG
CAAGATTGACCTGAGTATGATCGGGCTCTTTAGGCAGCAGCATCGTTAGT
GCCCTCACCACCGTCAACCCAGGCGTTGTGACCAACCCCTTCGCCACTCG
CCACCCGCTTCTTCCCCTATCGTGCCAAAAGCGAGGAGGAGGAGGAGGAG
GGAGAAGAAGGAGGAGCCCCCCCCCACCGCGTCAACCAACCGGTGGGCGG
TTTTCGCCGAAGACGAGGATGACGACGACGAGGACGAGGGCAAGGGAGCA
GAAGGTGAGCTCTCTGCTAGGTACTACCGCAGTCGATGCACCTATCTCAG
GTAGCAGGACCCTCCTCTCGACCCTTCACGCCCCCTCCCTGTGGTCGGCG
AAAAGTCTTGCGGGTTCCGCCCCGGGTTTGCGAGGGTCACGACGTTCCCT
GCAGCCTGTGACGTGAAAGTGATCTACTGTGGCTGTCCATTTTCGTGATC
AAGAACAAGTTCCTCATCATTCGCCCTCTCTCCTTCACCCGGTTTTTCCC
CACGCCAAACGTTGCAGGAGCAACGCCCGCCGACGTCACGCCCGCCATGT
CGCCCCCCGGCAGGGGTCGAACCCGCGGCAAGTCGCCGAGCCCGAGTCGC
CGCCGGGCCAACAATGAACGCCAAGACTCCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10143:609..2591-

>mRNA_E-siliculosus-1a_F_contig10143.153.1 ID=mRNA_E-siliculosus-1a_F_contig10143.153.1|Name=mRNA_E-siliculosus-1a_F_contig10143.153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1662bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10143:609..2591- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCGTCTGCAGACGGCACGCTCGGCCTGCTACGAGTATCACCTGGAGGG
AATCCAGAACCGGCAAGACGCCTACCGGGCGAGCATTGCGTTGGCGCAAG
CCGAGCACGACCTGCAGAAAATGACCCAGGTGGTAGCCCGGTTCAACGTC
CAGACCGAGGCAAGTGCTGCTCGTCTGCAGACGGCACGCTCGGCCTGCTA
CGAGTATCACCTGGAGGGAATCCAGAACCGGCAAGACGCCTACCGGGCGA
GCATTGCGTTGGCGCAAGCCGAGCACGACCTGCAGAAAATGACCCAGGTG
GTAGCCCGGTTCAACGTCCAGACCGAGGCAAGTGCTCTCCAGCGCTTAGG
GATGCTTTCCCTAAACGCCGCATTGATGAAGGAGGAAGGGAAGACGGAAA
AGGCGGAACGTGACTTGGTTACGTGCCGTGCCAAGTACGAGCTCCAGCGC
TTAGGGATGCTTTCCCTAAACGCCGCATTGATGAAGGAGGAAGGGAAGAC
GGAAAAGGCGGAACGTGACTTGGTTACGTGCCGTGCCAAGTACGAGGAAT
GTCGGTCCTCGCTGCAGTTGGCGAGGGAGCAGATGGCGAGGGATTCTGCT
CAGGGGGAGGCGGTCGAGGAGGCCGCCCGCACGGCGGCAACCCGGGGGAA
CGAGACGCGGCCTCAAGCCCAGCAGCAGCAAGTTCCCCACGGCTCCCACG
CGTCCACGGCCAGCGACGCCGAGCTGGACGAGGAAGGGTTCGGCCTGAAG
CACATGAAGGAGGCGATGCTTCGGTCTTTGGAGGAGGAGTCCAAGCAGGA
CGGGGGGCGTGACCCGCAACATGGGAAGGTTTCATCAGCACCGTGGGCAA
AGGCGACAGCAGCACCGGGTAAGAATGTCGGTCCTCGCTGCAGTTGGCGA
GGGAGCAGATGGCGAGGGATTCTGCTCAGGGGGAGGCGGTCGAGGAGGCC
GCCCGCACGGCGGCAACCCGGGGGAACGAGACGCGGCCTCAAGCCCAGCA
GCAGCAAGTTCCCCACGGCTCCCACGCGTCCACGGCCAGCGACGCCGAGC
TGGACGAGGAAGGGTTCGGCCTGAAGCACATGAAGGAGGCGATGCTTCGG
TCTTTGGAGGAGGAGTCCAAGCAGGACGGGGGGCGTGACCCGCAACATGG
GAAGGTTTCATCAGCACCGTGGGCAAAGGCGACAGCAGCACCGGGTAAGA
GGAGGAGGAGGGAGAAGAAGGAGGAGCCCCCCCCCACCGCGTCAACCAAC
CGGTGGGCGGTTTTCGCCGAAGACGAGGATGACGACGACGAGGACGAGGG
CAAGGGAGCAGAAGGAGGAGGAGGAGGGAGAAGAAGGAGGAGCCCCCCCC
CACCGCGTCAACCAACCGGTGGGCGGTTTTCGCCGAAGACGAGGATGACG
ACGACGAGGACGAGGGCAAGGGAGCAGAAGGAGCAACGCCCGCCGACGTC
ACGCCCGCCATGTCGCCCCCCGGCAGGGGTCGAACCCGCGGCAAGTCGCC
GAGCCCGAGTCGCCGCCGGGCCAACAATGAACGCCAAGACTCCTAGGAGC
AACGCCCGCCGACGTCACGCCCGCCATGTCGCCCCCCGGCAGGGGTCGAA
CCCGCGGCAAGTCGCCGAGCCCGAGTCGCCGCCGGGCCAACAATGAACGC
CAAGACTCCTAG
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