mRNA_E-siliculosus-1a_F_contig1241.1513.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1241.1513.1 vs. uniprot
Match: A0A6H5JHW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW4_9PHAE) HSP 1 Score: 1469 bits (3802), Expect = 0.000e+0 Identity = 938/1327 (70.69%), Postives = 956/1327 (72.04%), Query Frame = 1
Query: 319 PYPPPGPQACMRVGDVLVSVDGKSVEGATLPVALAAIETARRRDRLRDFITAKQDDPRKGNVVMIFERVSPRLTFRDVALDPRKVVYLLNYMLEVRCAGTGGVGGXXXXXXXXXGKKEAVIISLDEARLMFWLEVQVLFEMSAVMAPSRDDMSKVYDKFFRPGSGFYVHELTDTRQAKIRTRRSWDGDVSGLPSVGRKAHPDPSAKTAKGVAQPQDAASSGSGSGGVVSTASTDSAASVSPCVGGGEGLGXXXXXXXXXXXXXXXXXXXXXX---NIEAGEPPSSXXXXXXXXXXXXXXXXGSDVSAKHGAEAGENGTREGSGGTKPAVGAGDWVSLPVEFLAADLSKIFRASQEKVEETLTAGCFYRFKTSPWKGRMVAHLSNSPDFVHVPFERIMAEQELRDVMMLHMIITQTPGWLQVWREIELTVKPRMALLQTRRSVRHRRGSALSSRSSGTIRRHSASDDWERPM-SSSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSPDMRELKAAAAVAIVASAVYLWDFFLSADSHASLGVARDTNAYVTLKQLLAENVPGDKMGGPGAGDASSGDGPGTQKGRDAGDDYAVSVGKALLDMQRHVLRK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LCASVYPDFQASSSHEHLCAELTTGTRSPARLPPGPPDQLDFDPAPSQQQRDSIGGXXXXXXXXXGPTPGVRRGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---EVGAGDKASSASPFAFLGGGTPPSDGERKAVTAGNSHARRSSAPGVTPTGVASRGAGIGGKSGPGRVDPFPSEEDAPRMSDRAGRVQGVSGPQFDPLWRASRGWVLDKVMRRVELPPHVSRHRPPWDKACQQGRRGDKGAVGAGRPSSDTAPPDLRQHLSLPRTARRLGRRPSHSSGSLVPGEPTEEADSSAG-------GGGGVAGDLDVASPPDVLGSRSGFGVQEAQGIEPGPRG--AREDGGGGVVGEGIRGCAEWAVSFSGSLQQGITTVQ-----------TEHAVCVAPRNLGLDVPPEGLEAFYCPCLPASGEAPRACPPPSGGKSSSGVGKGGRGSGSSRGGCFGPGVPPPAPRLFTFAAPGRSGAGTFYGACLSVFR 3576
PYPPPGPQACMRVGDVLVSVDGKSVEGATLPVALAAIETARRRDRLRDFITAKQDDPRKGNVVM+FERVSPRLTFRDVALDPRKVVYLLNYMLEVRCAGTGGVGGXXXXXXXXX KEAVIISLDEARLMFWLEVQVLFEMSAVMAPSRDDMSKVYDKFFRPGSGFYVHELTDTRQAKIRTRRSWDGDVSGLPSVGR A PDPSAKTAK VAQPQDAASSGSGS GV ST A XXXXXXXXXXXXX XXXXXX NI+AGEPPSS XXXXXXXX GSDV AKHGAEAGENGTREGSGG K A GA DWVSLPVEFLAADLSKIFRASQEKVEETLTAGCFYRFKTSPWKGRMVAHLSNSPDFVHVPFERIMAEQELRDVMMLHMI+TQTPGWLQVW+EIELTVKPRMALLQTRRSVR RRGSALSSR SG W M + PPSPDMRELKAAAAVAIVASAVYLWDFFLSADSHASLGVARDTNAY TLKQLLAENVPGDKMGG GAGDASSGDGPGTQKGRDAGDDYAVSVGKALLDMQRHVLRK LCASVYPDFQASSSHEHLCAELTTGTRSPARLPPGPPD+LDFDP XXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EVGAG+KA SASPFAFLGGGTPPSDGERK +TAGNSHARRSSAPGV+PTGVASRGAG+GGK+GPGRVDPF SE+DAPR+SDRAGRVQGVSGPQF+PLWRASRGWVL+KVMRRVELPPHVSRHRPP DKACQQGRRG KGAVG+G SS TAPPDLRQHLSLPRTARRLGRRP+HSSGSLVPGEPTEEADSSAG GGGGVAGDLDVASPPDVLGSRSGFGVQE QGIEPGP G AREDGGGGVVGEGIRGCAEWAVSFSGSL+QGI TVQ TEHAVCVAPRNLGLDV PEGLEAFYCP LPASGEAPRACPPPSGGKSSSGVGKGGRGSGSSRGGCFGPGVPPP PRLFTFAAPGRSG GTFYGACLSVFR
Sbjct: 50 PYPPPGPQACMRVGDVLVSVDGKSVEGATLPVALAAIETARRRDRLRDFITAKQDDPRKGNVVMVFERVSPRLTFRDVALDPRKVVYLLNYMLEVRCAGTGGVGGXXXXXXXXXXXKEAVIISLDEARLMFWLEVQVLFEMSAVMAPSRDDMSKVYDKFFRPGSGFYVHELTDTRQAKIRTRRSWDGDVSGLPSVGRVARPDPSAKTAKEVAQPQDAASSGSGSEGVASTXXXXXAVXXXXXXXXXXXXXXXXXXXXXXXXXXEGKXXXXXXXXXNIKAGEPPSSAXXXXXXXXRSSTEGGGSDVLAKHGAEAGENGTREGSGGRKAAAGAEDWVSLPVEFLAADLSKIFRASQEKVEETLTAGCFYRFKTSPWKGRMVAHLSNSPDFVHVPFERIMAEQELRDVMMLHMIVTQTPGWLQVWKEIELTVKPRMALLQTRRSVRQRRGSALSSRGSGV-------SVWLYFMIHGGVNEEREAIIEAGTLGTQRSSIRVGTSTPSFSPPSPDMRELKAAAAVAIVASAVYLWDFFLSADSHASLGVARDTNAYGTLKQLLAENVPGDKMGGCGAGDASSGDGPGTQKGRDAGDDYAVSVGKALLDMQRHVLRKAAWGKATPGNKGIRWDKVVERVWKEIGDEEETLDTKGFGGFKKKVKEMLESREEATLRKKVRSEDHLEIYGKLKEGIGMKSYLDGPMDYAKKLKLQFRVGDLDLPERRKRYSSXXXXXXXDRQTCPCGKSEEIRPHIVGECELYRKEREDLEEDMRQRGCDMDKFGKLDNSEKIIAVIGDRWWAQEAVEDGGIRCARNFYVVCGRNVKSSQMLVLCASVYPDFQASSSHEHLCAELTTGTRSPARLPPGPPDELDFDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEVGAGEKAGSASPFAFLGGGTPPSDGERKVITAGNSHARRSSAPGVSPTGVASRGAGVGGKNGPGRVDPFQSEDDAPRVSDRAGRVQGVSGPQFEPLWRASRGWVLEKVMRRVELPPHVSRHRPPLDKACQQGRRGGKGAVGSGTSSSGTAPPDLRQHLSLPRTARRLGRRPNHSSGSLVPGEPTEEADSSAGVGGSTQGGGGGVAGDLDVASPPDVLGSRSGFGVQETQGIEPGPTGDRAREDGGGGVVGEGIRGCAEWAVSFSGSLRQGIMTVQVWGGHEARGRCTEHAVCVAPRNLGLDVLPEGLEAFYCPGLPASGEAPRACPPPSGGKSSSGVGKGGRGSGSSRGGCFGPGVPPPPPRLFTFAAPGRSGTGTFYGACLSVFR 1369
BLAST of mRNA_E-siliculosus-1a_F_contig1241.1513.1 vs. uniprot
Match: D8LH28_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH28_ECTSI) HSP 1 Score: 939 bits (2428), Expect = 0.000e+0 Identity = 540/587 (91.99%), Postives = 548/587 (93.36%), Query Frame = 1
Query: 1840 MRELKAAAAVAIVASAVYLWDFFLSADSHASLGVARDTNAYVTLKQLLAENVPGDKMGGPGAGDASSGDGPGTQKGRDAGDDYAVSVGKALLDMQRHVLRKLCASVYPDFQASSSHEHLCAELTTGTRSPARLPPGPPDQLDFDPAPSQQQRDSIGGXXXXXXXXXGPTPGVRRGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVGAGDKASSASPFAFLGGGTPPSDGERKAVTAGNSHARRSSAPGVTPTGVASRGAGIGGKSGPGRVDPFPSEEDAPRMSDRAGRVQGVSGPQFDPLWRASRGWVLDKVMRRVELPPHVSRHRPPWDKACQQGRRGDKGAVGAGRPSSDTAPPDLRQHLSLPRTARRLGRRPSHSSGSLVPGEPTEEADSSAG--------GGGGVAGDLDVASPPDVLGSRSGFGVQEAQGIEPGPRGAREDGGGGVVGEGIRGCAEWAVSFSGSLQQGITTVQTEHAVCVAPRNLGLDVPPEGLEAFYCPCLPASGEAPRACPPPSGGKSSSGVGKGGRGSGSSRGGCFGPGVPPPAPRLFTFAAPGRSGAGTFYGACLSVFR 3576
MRELKAAAAVAIVASAVYLWDFFLSADSHASLGVARDTNAYVTLKQLLAENVPGDKMGGPGAGDASSGDGP TQKGRDAGDDYAVSVGKALLDMQRHVLRK+CASVYPDFQASSSHEHLCAELTTGTRSPARLPPGPPDQLDFDPAPSQQQRDSIG XXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EVGAGDKA+SASPFAFLGGGTPPSDGERKAVTAGNSHARRSSAPGV+PTGVASRGAGIGGKSGPGRVDPFP EEDAPR+SDRAGRVQGVSGPQF+PLWRASRGWVL+KVMRRVELPPHVSRHRPPWDKACQQGRRG+KGAVG GR SS TAPPDLRQHLSLPRTARRLGRRPSHSSGSLVPGEP +EADSSAG GGGGVAGDLDVASPPDVLGSRSGFGVQE QGIEPGP GAREDGG GVVGEGIRGCAEWAVSFSGSLQQGITTVQTEHAVCVAPRNLGLDVPPEGLEAFY PCLPASGEAPRACPP GGKSS GVGKGGRGSGSSRG CFGPGVPPP PRLFTFAAPGRSGAGTFYGACLSVFR
Sbjct: 1 MRELKAAAAVAIVASAVYLWDFFLSADSHASLGVARDTNAYVTLKQLLAENVPGDKMGGPGAGDASSGDGPDTQKGRDAGDDYAVSVGKALLDMQRHVLRKICASVYPDFQASSSHEHLCAELTTGTRSPARLPPGPPDQLDFDPAPSQQQRDSIGXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGSEVGAGDKATSASPFAFLGGGTPPSDGERKAVTAGNSHARRSSAPGVSPTGVASRGAGIGGKSGPGRVDPFPPEEDAPRVSDRAGRVQGVSGPQFEPLWRASRGWVLEKVMRRVELPPHVSRHRPPWDKACQQGRRGEKGAVGTGRSSSGTAPPDLRQHLSLPRTARRLGRRPSHSSGSLVPGEPPKEADSSAGVGGSTHAGGGGGVAGDLDVASPPDVLGSRSGFGVQETQGIEPGPTGAREDGGSGVVGEGIRGCAEWAVSFSGSLQQGITTVQTEHAVCVAPRNLGLDVPPEGLEAFYSPCLPASGEAPRACPPLGGGKSS-GVGKGGRGSGSSRGRCFGPGVPPPPPRLFTFAAPGRSGAGTFYGACLSVFR 583
BLAST of mRNA_E-siliculosus-1a_F_contig1241.1513.1 vs. uniprot
Match: D8LH29_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH29_ECTSI) HSP 1 Score: 518 bits (1335), Expect = 2.870e-170 Identity = 326/368 (88.59%), Postives = 328/368 (89.13%), Query Frame = 1
Query: 319 PYPPPGPQACMRVGDVLVSVDGKSVEGATLPVALAAIETARRRDRLRDFITAKQDDPRKGNVVMIFERVSPRLTFRDVALDPRKVVYLLNYMLEVRCAGTGGVGGXXXXXXXXXGKKEAVIISLDEARLMFWLEVQVLFEMSAVMAPSRDDMSKVYDKFFRPGSGFYVHELTDTRQAKIRTRRSWDGDVSGLPSVGRKAHPDPSAKTAKGVAQPQDAASSGSGSGG--VVSTASTDSAASVSPCVGGGEGL-GXXXXXXXXXXXXXXXXXXXXXXNIEAGEPPSSXXXXXXXXXXXXXXXXGSDVSAKHGAEAGENGTREGSGGTKPAVGAGDWVSLPVEFLAADLSKIFRASQEKVEETLTAGCFYR 1413
PYPPPGPQACMRVGDVLVSVDGKSVEGATLPVALAAIETARRRDRLRDFITAKQDDPRKGNVVM+FERVSPRLTFRD+ALDPRKVVYLLNYMLEVRCAGTGGVGGXXXXXXXXX KEAVIISLDEARLMFWLEVQVLFEMSAVMAPSRDDMSKVYDKFFRPGSGFYVHELTDTRQAKIRTRRSWDGDVSGLPSVGRKA DPSAKTAK VAQP V STA T AAS P VGGGEGL XXXXXXXXXXXXXXXXXNIEAGEPPS XXXXXXXXXXX GSDVSAKHGAEAGENGTREGSGGTKPAVGA DWVSLPVEFLAADLSKIFRASQEKVEETLTAGCFYR
Sbjct: 50 PYPPPGPQACMRVGDVLVSVDGKSVEGATLPVALAAIETARRRDRLRDFITAKQDDPRKGNVVMVFERVSPRLTFRDIALDPRKVVYLLNYMLEVRCAGTGGVGGXXXXXXXXXXXKEAVIISLDEARLMFWLEVQVLFEMSAVMAPSRDDMSKVYDKFFRPGSGFYVHELTDTRQAKIRTRRSWDGDVSGLPSVGRKA--DPSAKTAKEVAQPXXXXXXXXXXXXXXVASTAGTGPAASSLPGVGGGEGLDAITTASXXXXXXXXXXXXXXXXXNIEAGEPPSXXXXXXXXXXXXSTEGGGSDVSAKHGAEAGENGTREGSGGTKPAVGARDWVSLPVEFLAADLSKIFRASQEKVEETLTAGCFYR 415
BLAST of mRNA_E-siliculosus-1a_F_contig1241.1513.1 vs. uniprot
Match: A0A6H5KG55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG55_9PHAE) HSP 1 Score: 211 bits (536), Expect = 4.810e-59 Identity = 117/142 (82.39%), Postives = 123/142 (86.62%), Query Frame = 1
Query: 2872 GRRGDKGAVGAGRPSSDTAPPDLRQHLSLPRTARRLGRRPSHSSGSLVPGEPTEEADSSAG-------GGGGVAGDLDVASPPDVLGSRSGFGVQEAQGIEPGPRGAREDGGGGVVGEGIRGCAEWAVSFSGSLQQGITTVQ 3276
G +G KGAVG+G SS TAP DLRQHLSL RTA+RLGRRPSHSSGSLVPGEPTEEADSSAG GGGGVAGD DVASPP+VLGSRSGFGVQE QGIEPGP GAREDGGGGVVGEGI+GCAEW VSFSGSL+QGI TVQ
Sbjct: 30 GSKGGKGAVGSGTSSSGTAPLDLRQHLSLTRTAQRLGRRPSHSSGSLVPGEPTEEADSSAGVGGSTQGGGGGVAGDSDVASPPNVLGSRSGFGVQETQGIEPGPTGAREDGGGGVVGEGIKGCAEWTVSFSGSLRQGIMTVQ 171 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1241.1513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1241.1513.1 >prot_E-siliculosus-1a_F_contig1241.1513.1 ID=prot_E-siliculosus-1a_F_contig1241.1513.1|Name=mRNA_E-siliculosus-1a_F_contig1241.1513.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1140bp MKSSSRRVEHLWASSCTRPRAKEVTDRLTLCKRSSLCIALLLRVSVSWPYback to top mRNA from alignment at E-siliculosus-1a_F_contig1241:474..10073- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1241.1513.1 ID=mRNA_E-siliculosus-1a_F_contig1241.1513.1|Name=mRNA_E-siliculosus-1a_F_contig1241.1513.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9600bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1241:474..10073- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1241:474..10073- >mRNA_E-siliculosus-1a_F_contig1241.1513.1 ID=mRNA_E-siliculosus-1a_F_contig1241.1513.1|Name=mRNA_E-siliculosus-1a_F_contig1241.1513.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1241:474..10073- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |