mRNA_E-siliculosus-1a_F_contig124.1498.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE) HSP 1 Score: 243 bits (621), Expect = 6.750e-68 Identity = 141/199 (70.85%), Postives = 150/199 (75.38%), Query Frame = 2
Query: 26 QRLNQGYSQKMDAVALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVVTLTLQQSDGREHGRTAIAGSXXXXXXXXXXXXXXXXXXXXXX---RRGSKEGAVSGVGNKXXXXXXXXXXXXXXXXXKRSRTGSPAVESVVS 613
Q Q KMD VALPPAV SSPRRIRVVF ADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHL RQLK+RKG+KARSSSL+LTLDGFVLPPTESLDVLRETDVVTLTL+QSDGREHGRTAI+G+ XXXXXXX +RG +EG+VSGVGNK KRSRTGSPAVES S
Sbjct: 44 QNQMQVIFVKMDTVALPPAVASSPRRIRVVFKADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLKRRKGRKARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTLRQSDGREHGRTAISGNSTTXXXXXXXGAGKAKTNQKAKAPKKRGGREGSVSGVGNKAGGKKRGAPAVGAAAGRKRSRTGSPAVESSAS 242
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ) HSP 1 Score: 57.8 bits (138), Expect = 6.540e-7 Identity = 33/95 (34.74%), Postives = 55/95 (57.89%), Query Frame = 2
Query: 65 VALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKR-WIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVV 346
+A PPA R+R+VF S + +R W+ +PP L+ + DLA H+A + + R+ + S ++L++DGFVLPP ES + R+ D++
Sbjct: 1 MATPPAQAV---RLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLRR---SCPSCVILSIDGFVLPPFESTCIFRDNDII 89
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: B8BP67_ORYSI (Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP67_ORYSI) HSP 1 Score: 60.1 bits (144), Expect = 6.630e-6 Identity = 34/118 (28.81%), Postives = 63/118 (53.39%), Query Frame = 2
Query: 26 QRLNQGYSQKMDAVALPPAVVSSPR---RIRVVFTADAGCVPSSNPTLTKR-WIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVVTLTLQQS 367
+ +G + + PP + + P R+R+VF S + +R W+ +PP L+ + DLA H+A + + R+ + S ++L++DGFVLPP ES + R+ D++ + + S
Sbjct: 114 ENSEEGINPRRPPRCQPPPMATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLRR---SCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKAS 228
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: A0A452ZID7_AEGTS (Coilin n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZID7_AEGTS) HSP 1 Score: 58.5 bits (140), Expect = 8.610e-6 Identity = 30/94 (31.91%), Postives = 52/94 (55.32%), Query Frame = 2
Query: 65 VALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVV 346
+A PPA SP R+R+VF + + L + W+ + P L + DL+ H+A + + + + ++LT+DGF LPP ES + R+ D++
Sbjct: 27 MATPPAXXPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHR---SCPGGVVLTMDGFALPPFESTCIFRDKDII 116
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: A0A0E0RG41_ORYRU (Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_ORYRU) HSP 1 Score: 58.2 bits (139), Expect = 2.500e-5 Identity = 34/102 (33.33%), Postives = 58/102 (56.86%), Query Frame = 2
Query: 65 VALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKR-WIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVVTLTLQQS 367
+A PPA R+R+VF S + +R W+ +PP L+ + DLA H+A + + R+ + S ++L++DGFVLPP ES + R+ D++ + + S
Sbjct: 1 MATPPAQAV---RLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLRR---SCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKAS 96
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: A0A3B5ZYF5_WHEAT (Coilin n=23 Tax=Triticinae TaxID=1648030 RepID=A0A3B5ZYF5_WHEAT) HSP 1 Score: 57.8 bits (138), Expect = 3.330e-5 Identity = 30/94 (31.91%), Postives = 52/94 (55.32%), Query Frame = 2
Query: 65 VALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVV 346
+A PPA SP R+R+VF + + L + W+ + P L + DL+ H+A + + + + ++LT+DGF LPP ES + R+ D++
Sbjct: 1 MATPPAPSPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHR---SCPGGVVLTMDGFALPPFESTCIFRDKDII 90
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: A0A6G1BQ98_9ORYZ (Coilin n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BQ98_9ORYZ) HSP 1 Score: 56.6 bits (135), Expect = 7.500e-5 Identity = 33/95 (34.74%), Postives = 53/95 (55.79%), Query Frame = 2
Query: 65 VALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKR-WIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVV 346
+A PPA V R+R+VF S + +R W+ +PP L + DLA H+A + + R + ++L++DGFVLPP ES + R+ D++
Sbjct: 1 MATPPAQVV---RLRLVFDNQRLLRRSQRESGLRRCWLLLPPELATVADLAAHIAARFRLRY---SCPGCVILSIDGFVLPPFESTCIFRDNDII 89
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: UPI0019D6AB8C (coilin-like isoform X1 n=3 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D6AB8C) HSP 1 Score: 56.6 bits (135), Expect = 7.630e-5 Identity = 31/95 (32.63%), Postives = 52/95 (54.74%), Query Frame = 2
Query: 65 VALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKR-WIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVV 346
+A PP +P R+R+VF + +R W+ + P L + DLA H+A + + R+ SS ++L++DGF LPP ES + R+ D++
Sbjct: 1 MARPPPDAPAPVRLRLVFENRRLLRRTERDEGLRRCWLLLRPELATVADLASHVAARFRLRR---FCSSGIILSMDGFALPPFESTCIFRDNDII 92 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig124.1498.1 >prot_E-siliculosus-1a_F_contig124.1498.1 ID=prot_E-siliculosus-1a_F_contig124.1498.1|Name=mRNA_E-siliculosus-1a_F_contig124.1498.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=443bp MDAVALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKRWIFIPPRLTVIGback to top mRNA from alignment at E-siliculosus-1a_F_contig124:11333..13428- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig124.1498.1 ID=mRNA_E-siliculosus-1a_F_contig124.1498.1|Name=mRNA_E-siliculosus-1a_F_contig124.1498.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2096bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig124:11333..13428- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig124:11333..13428- >mRNA_E-siliculosus-1a_F_contig124.1498.1 ID=mRNA_E-siliculosus-1a_F_contig124.1498.1|Name=mRNA_E-siliculosus-1a_F_contig124.1498.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2658bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig124:11333..13428- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |