prot_E-siliculosus-1a_F_contig124.1498.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig124.1498.1
Unique Nameprot_E-siliculosus-1a_F_contig124.1498.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length443
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 7.200e-67
Identity = 138/189 (73.02%), Postives = 147/189 (77.78%), Query Frame = 0
Query:    1 MDAVALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVVTLTLQQSDGREHGRTAIAGSXXXXXXXXXXXXXXXXXXXXXX---RRGSKEGAVSGVGNKXXXXXXXXXXXXXXXXXKRSRTGSPAVESVVS 186
            MD VALPPAV SSPRRIRVVF ADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHL RQLK+RKG+KARSSSL+LTLDGFVLPPTESLDVLRETDVVTLTL+QSDGREHGRTAI+G+   XXXXXXX               +RG +EG+VSGVGNK                 KRSRTGSPAVES  S
Sbjct:   54 MDTVALPPAVASSPRRIRVVFKADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLKRRKGRKARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTLRQSDGREHGRTAISGNSTTXXXXXXXGAGKAKTNQKAKAPKKRGGREGSVSGVGNKAGGKKRGAPAVGAAAGRKRSRTGSPAVESSAS 242          
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ)

HSP 1 Score: 56.6 bits (135), Expect = 1.590e-6
Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 0
Query:    5 ALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKR-WIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVV 97
            A PPA      R+R+VF        S   +  +R W+ +PP L+ + DLA H+A + + R+   +  S ++L++DGFVLPP ES  + R+ D++
Sbjct:    2 ATPPAQAV---RLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLRR---SCPSCVILSIDGFVLPPFESTCIFRDNDII 89          
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: A0A452ZID7_AEGTS (Coilin n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZID7_AEGTS)

HSP 1 Score: 57.4 bits (137), Expect = 1.920e-5
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 0
Query:    5 ALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVV 97
            A PPA   SP R+R+VF      +  +   L + W+ + P L  + DL+ H+A + +  +   +    ++LT+DGF LPP ES  + R+ D++
Sbjct:   28 ATPPAXXPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHR---SCPGGVVLTMDGFALPPFESTCIFRDKDII 116          
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: B8BP67_ORYSI (Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP67_ORYSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.460e-5
Identity = 33/102 (32.35%), Postives = 58/102 (56.86%), Query Frame = 0
Query:    7 PPAVVSSPR---RIRVVFTADAGCVPSSNPTLTKR-WIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVVTLTLQQS 104
            PP + + P    R+R+VF        S   +  +R W+ +PP L+ + DLA H+A + + R+   +  S ++L++DGFVLPP ES  + R+ D++ +  + S
Sbjct:  130 PPPMATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLRR---SCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKAS 228          
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: A0A0E0RG41_ORYRU (Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_ORYRU)

HSP 1 Score: 57.0 bits (136), Expect = 5.330e-5
Identity = 34/101 (33.66%), Postives = 57/101 (56.44%), Query Frame = 0
Query:    5 ALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKR-WIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVVTLTLQQS 104
            A PPA      R+R+VF        S   +  +R W+ +PP L+ + DLA H+A + + R+   +  S ++L++DGFVLPP ES  + R+ D++ +  + S
Sbjct:    2 ATPPAQAV---RLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLRR---SCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKAS 96          
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Match: A0A3B5ZYF5_WHEAT (Coilin n=23 Tax=Triticinae TaxID=1648030 RepID=A0A3B5ZYF5_WHEAT)

HSP 1 Score: 56.6 bits (135), Expect = 7.090e-5
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 0
Query:    5 ALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVV 97
            A PPA   SP R+R+VF      +  +   L + W+ + P L  + DL+ H+A + +  +   +    ++LT+DGF LPP ES  + R+ D++
Sbjct:    2 ATPPAPSPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHR---SCPGGVVLTMDGFALPPFESTCIFRDKDII 90          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig124.1498.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L4H0_9PHAE7.200e-6773.02Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A0P0Y9A7_ORYSJ1.590e-635.11Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=... [more]
A0A452ZID7_AEGTS1.920e-532.26Coilin n=1 Tax=Aegilops tauschii subsp. strangulat... [more]
B8BP67_ORYSI2.460e-532.35Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP6... [more]
A0A0E0RG41_ORYRU5.330e-533.66Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_O... [more]
A0A3B5ZYF5_WHEAT7.090e-532.26Coilin n=23 Tax=Triticinae TaxID=1648030 RepID=A0A... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 343..373
NoneNo IPR availablePANTHERPTHR15197:SF0COILINcoord: 15..237
IPR031722Coilin, N-terminal domainPFAMPF15862Coilin_Ncoord: 16..141
e-value: 6.4E-14
score: 51.9
IPR024822CoilinPANTHERPTHR15197COILIN P80coord: 15..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig124contigE-siliculosus-1a_F_contig124:11333..13373 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig124.1498.1mRNA_E-siliculosus-1a_F_contig124.1498.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig124 11333..13428 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig124.1498.1 ID=prot_E-siliculosus-1a_F_contig124.1498.1|Name=mRNA_E-siliculosus-1a_F_contig124.1498.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=443bp
MDAVALPPAVVSSPRRIRVVFTADAGCVPSSNPTLTKRWIFIPPRLTVIG
DLAHHLARQLKQRKGKKARSSSLMLTLDGFVLPPTESLDVLRETDVVTLT
LQQSDGREHGRTAIAGSSSSSSNTGAGSTKKKQKASAAKRRGSKEGAVSG
VGNKAGGKKRGAPAAGAAAGRKRSRTGSPAVESVVSSGKRRKVGSSSTAE
KAEKAVRKRAKGKGADSAAATQDSSSSDDDSSSSDESAPAKGGGRAAAGG
KGATAVAAKKPGELAAAVVYPAGGGEEAVAMSSTKKKKKKKKKTLPADVP
ARGAESTSSSSSDESSSSSSSSSTSSSGGSSSSSSSSSSSSSSSSSEEEE
SDSEEEEEEAEAKKTRSRKAKEVEPNALAAAAAAGDVDDSSSSSNGSDSS
DSDESSSSDEEEKAKETKGKGAKENAKGKRTPTLSAGGTAGGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024822Coilin
IPR031722Coilin_N