prot_E-siliculosus-1a_F_contig1236.1474.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1236.1474.1
Unique Nameprot_E-siliculosus-1a_F_contig1236.1474.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length122
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1236.1474.1 vs. uniprot
Match: D8LQF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF5_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 1.170e-75
Identity = 119/123 (96.75%), Postives = 120/123 (97.56%), Query Frame = 0 
Query:    1 MSHPRNVALAAMALWLGAIGALAFVV-APHSSLSAFSKHASRQPHEHHLLGYRNAGARKARGVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGRW 122
            M HPRNVALAAMALWLGAIGALAFVV APHSSLSAFSKHASRQPHEHHLLGYRN GARKARGVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGR+
Sbjct:    1 MPHPRNVALAAMALWLGAIGALAFVVVAPHSSLSAFSKHASRQPHEHHLLGYRNTGARKARGVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGRY 123
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BLAST of mRNA_E-siliculosus-1a_F_contig1236.1474.1 vs. uniprot
Match: A0A835YGN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.030e-17
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 0 
Query:   57 RKARGVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGRW 122
            R A  ++ ++ SI  DLKG+ERL+K+L DC LLGP RFVS+ DGAILEAVGSF+NLR+ DL KG +
Sbjct:   33 RAASALRMMTVSI--DLKGKERLQKYLKDCELLGPVRFVSMNDGAILEAVGSFENLRFNDLEKGTY 96
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BLAST of mRNA_E-siliculosus-1a_F_contig1236.1474.1 vs. uniprot
Match: A0A6U1NZN9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NZN9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.370e-10
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 0 
Query:   61 GVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGRW 122
            G   L A+    L+G  RLEKF  D +LLG  RFV VTDGAILE VGS++N++  DL KG++
Sbjct:   54 GSCALEATSVDGLEGIPRLEKFFQDSSLLGAVRFVVVTDGAILETVGSYENMKINDLDKGKF 115
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BLAST of mRNA_E-siliculosus-1a_F_contig1236.1474.1 vs. uniprot
Match: A0A7S3X2R9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X2R9_9SPIT)

HSP 1 Score: 57.4 bits (137), Expect = 1.110e-7
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0 
Query:   59 ARGVQGLS-ASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKG 120
            +R V  +S AS+P    G   + +FLGD   LGP RFV   +GAILEAVG+FD+LR ++ P G
Sbjct:   24 SRAVASISRASLPVMAAGPVGIRRFLGDLEFLGPCRFVVQGNGAILEAVGAFDDLRVSNTPNG 86
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1236.1474.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LQF5_ECTSI1.170e-7596.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGN4_9STRA3.030e-1762.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1NZN9_9STRA1.370e-1053.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3X2R9_9SPIT1.110e-749.21Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.1570.10coord: 76..122
e-value: 1.3E-8
score: 36.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..122
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..33
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..23
score: 0.548
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1236contigE-siliculosus-1a_F_contig1236:34463..35186 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1236.1474.1mRNA_E-siliculosus-1a_F_contig1236.1474.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1236 34463..35186 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1236.1474.1 ID=prot_E-siliculosus-1a_F_contig1236.1474.1|Name=mRNA_E-siliculosus-1a_F_contig1236.1474.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=122bp
MSHPRNVALAAMALWLGAIGALAFVVAPHSSLSAFSKHASRQPHEHHLLG
YRNAGARKARGVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDG
AILEAVGSFDNLRYTDLPKGRW
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