mRNA_E-siliculosus-1a_F_contig1236.1474.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1236.1474.1
Unique NamemRNA_E-siliculosus-1a_F_contig1236.1474.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1236.1474.1 vs. uniprot
Match: D8LQF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF5_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 1.170e-75
Identity = 119/123 (96.75%), Postives = 120/123 (97.56%), Query Frame = 1 
Query:    1 MSHPRNVALAAMALWLGAIGALAFVV-APHSSLSAFSKHASRQPHEHHLLGYRNAGARKARGVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGRW 366
            M HPRNVALAAMALWLGAIGALAFVV APHSSLSAFSKHASRQPHEHHLLGYRN GARKARGVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGR+
Sbjct:    1 MPHPRNVALAAMALWLGAIGALAFVVVAPHSSLSAFSKHASRQPHEHHLLGYRNTGARKARGVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGRY 123
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BLAST of mRNA_E-siliculosus-1a_F_contig1236.1474.1 vs. uniprot
Match: A0A835YGN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.030e-17
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:  169 RKARGVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGRW 366
            R A  ++ ++ SI  DLKG+ERL+K+L DC LLGP RFVS+ DGAILEAVGSF+NLR+ DL KG +
Sbjct:   33 RAASALRMMTVSI--DLKGKERLQKYLKDCELLGPVRFVSMNDGAILEAVGSFENLRFNDLEKGTY 96
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BLAST of mRNA_E-siliculosus-1a_F_contig1236.1474.1 vs. uniprot
Match: A0A6U1NZN9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NZN9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.370e-10
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  181 GVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGRW 366
            G   L A+    L+G  RLEKF  D +LLG  RFV VTDGAILE VGS++N++  DL KG++
Sbjct:   54 GSCALEATSVDGLEGIPRLEKFFQDSSLLGAVRFVVVTDGAILETVGSYENMKINDLDKGKF 115
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BLAST of mRNA_E-siliculosus-1a_F_contig1236.1474.1 vs. uniprot
Match: A0A7S3X2R9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X2R9_9SPIT)

HSP 1 Score: 57.4 bits (137), Expect = 1.110e-7
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:  175 ARGVQGLS-ASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKG 360
            +R V  +S AS+P    G   + +FLGD   LGP RFV   +GAILEAVG+FD+LR ++ P G
Sbjct:   24 SRAVASISRASLPVMAAGPVGIRRFLGDLEFLGPCRFVVQGNGAILEAVGAFDDLRVSNTPNG 86
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1236.1474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LQF5_ECTSI1.170e-7596.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGN4_9STRA3.030e-1762.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1NZN9_9STRA1.370e-1053.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3X2R9_9SPIT1.110e-749.21Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1236contigE-siliculosus-1a_F_contig1236:34463..35186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size366
Model size366
Exons2
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
Ec32 orthologEc-10_005430.1
Ec32 ortholog descriptionconserved unknown protein
EggNOG OGs28J5U@1,2SDH4@2759
Seed eggNOG ortholog2880.D8LQF5
Seed ortholog evalue9.5e-59
Seed ortholog score232.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.5890465-CDS-E-siliculosus-1a_F_contig1236:34462..346751622927756.5890465-CDS-E-siliculosus-1a_F_contig1236:34462..34675Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1236 34463..34675 +
1696318668.057433-CDS-E-siliculosus-1a_F_contig1236:34462..346751696318668.057433-CDS-E-siliculosus-1a_F_contig1236:34462..34675Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1236 34463..34675 +
1622927756.6015267-CDS-E-siliculosus-1a_F_contig1236:35033..351861622927756.6015267-CDS-E-siliculosus-1a_F_contig1236:35033..35186Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1236 35034..35186 +
1696318668.0675538-CDS-E-siliculosus-1a_F_contig1236:35033..351861696318668.0675538-CDS-E-siliculosus-1a_F_contig1236:35033..35186Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1236 35034..35186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1236.1474.1prot_E-siliculosus-1a_F_contig1236.1474.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1236 34463..35186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1236.1474.1

>prot_E-siliculosus-1a_F_contig1236.1474.1 ID=prot_E-siliculosus-1a_F_contig1236.1474.1|Name=mRNA_E-siliculosus-1a_F_contig1236.1474.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=122bp
MSHPRNVALAAMALWLGAIGALAFVVAPHSSLSAFSKHASRQPHEHHLLG
YRNAGARKARGVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDG
AILEAVGSFDNLRYTDLPKGRW
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mRNA from alignment at E-siliculosus-1a_F_contig1236:34463..35186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1236.1474.1 ID=mRNA_E-siliculosus-1a_F_contig1236.1474.1|Name=mRNA_E-siliculosus-1a_F_contig1236.1474.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=724bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1236:34463..35186+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTCACCCCCGGAATGTCGCACTCGCAGCAATGGCACTGTGGTTGGG
CGCAATTGGTGCGTTAGCCTTCGTGGTGGCTCCACACTCCTCTCTGTCAG
CCTTCTCGAAACATGCGTCTCGCCAACCTCATGAGCACCACCTCCTGGGC
TACCGCAACGCTGGCGCTAGGAAGGCGCGAGGGGTCCAAGGCCTGTCAGC
TTCGATACCGAGTGTGAGTTTTTTGTTTCGTTGCCCTAATGCTTGATACC
CGATGCACTGGAAGCGAAAACTGCCGTCCCCGCCTCCATTTGAGTCAAGT
TGCAGTGCTGACCCCCGCTGGCTCTTTCTCTCTCTCTCTCTCTCTCTCGC
CCTCTAAGAAATGCATGCATCACCTCTCTCAGCCCGGCTGCTCGAACACA
GGGCTACGTGTCTACTGCAATAGAGCGAACGCTTGCGTGGGTCTTGTCAA
GGCTGTATTCGTACGTACACCGTTGCACTTTGGTTCCAGTTCCTTCTGCT
GTAAGATGCCTACACCAGTGTAGACCTCTGGTCGCTGGTGCTGCTGCTGA
TTTCGTTTTCGACCATCGCAGGACCTGAAAGGAAGGGAAAGACTGGAAAA
ATTCTTGGGCGACTGTGCTCTACTCGGCCCTACGCGCTTTGTTTCCGTAA
CCGACGGCGCTATCCTGGAGGCTGTGGGGTCGTTTGACAATCTCCGGTAC
ACCGATCTTCCCAAGGGCAGGTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1236:34463..35186+

>mRNA_E-siliculosus-1a_F_contig1236.1474.1 ID=mRNA_E-siliculosus-1a_F_contig1236.1474.1|Name=mRNA_E-siliculosus-1a_F_contig1236.1474.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=732bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1236:34463..35186+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTCACCCCCGGAATGTCGCACTCGCAGCAATGGCACTGTGGTTGGG
CGCAATTGGTGCGTTAGCCTTCGTGGTGGCTCCACACTCCTCTCTGTCAG
CCTTCTCGAAACATGCGTCTCGCCAACCTCATGAGCACCACCTCCTGGGC
TACCGCAACGCTGGCGCTAGGAAGGCGCGAGGGGTCCAAGGCCTGTCAGC
TTCGATACCGAGTATGTCTCACCCCCGGAATGTCGCACTCGCAGCAATGG
CACTGTGGTTGGGCGCAATTGGTGCGTTAGCCTTCGTGGTGGCTCCACAC
TCCTCTCTGTCAGCCTTCTCGAAACATGCGTCTCGCCAACCTCATGAGCA
CCACCTCCTGGGCTACCGCAACGCTGGCGCTAGGAAGGCGCGAGGGGTCC
AAGGCCTGTCAGCTTCGATACCGAGTGACCTGAAAGGAAGGGAAAGACTG
GAAAAATTCTTGGGCGACTGTGCTCTACTCGGCCCTACGCGCTTTGTTTC
CGTAACCGACGGCGCTATCCTGGAGGCTGTGGGGTCGTTTGACAATCTCC
GGTACACCGATCTTCCCAAGGGCAGGTGGGACCTGAAAGGAAGGGAAAGA
CTGGAAAAATTCTTGGGCGACTGTGCTCTACTCGGCCCTACGCGCTTTGT
TTCCGTAACCGACGGCGCTATCCTGGAGGCTGTGGGGTCGTTTGACAATC
TCCGGTACACCGATCTTCCCAAGGGCAGGTGG
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