prot_E-siliculosus-1a_F_contig12359.1471.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig12359.1471.1
Unique Name	prot_E-siliculosus-1a_F_contig12359.1471.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	101

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A1I9LVJ8_9PHAE (50S ribosomal protein L23, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ8_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.040e-57
Identity = 89/100 (89.00%), Postives = 98/100 (98.00%), Query Frame = 0

Query:    1 MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFSND 100
            M +INFSSSIDLIKYPLITSKTNLLFE+NQYTFLVDPRLNK++IKKAIEFLFDVKIIKINSCNLPKKKRR+G+ +GIKP+YKKVIVKLAKDNKIDLFSN+
Sbjct:    1 MARINFSSSIDLIKYPLITSKTNLLFEHNQYTFLVDPRLNKVNIKKAIEFLFDVKIIKINSCNLPKKKRRIGKVSGIKPQYKKVIVKLAKDNKIDLFSNN 100

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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A0R6LUV2_UNDPI (50S ribosomal protein L23, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUV2_UNDPI)

HSP 1 Score: 174 bits (441), Expect = 8.240e-55
Identity = 84/98 (85.71%), Postives = 92/98 (93.88%), Query Frame = 0

Query:    1 MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFS 98
            M +I FSSSIDLIKYP+ T KTNLL ENNQYTFLVDP+LNK+SIKKAIEFLFDV +IK+NSCNLPKKKRRVGQFTG++PRYKKVIVKLAKDNKIDLFS
Sbjct:    1 MARIKFSSSIDLIKYPVTTIKTNLLLENNQYTFLVDPKLNKVSIKKAIEFLFDVSVIKVNSCNLPKKKRRVGQFTGVRPRYKKVIVKLAKDNKIDLFS 98

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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A2R4QQ38_9PHAE (50S ribosomal protein L23 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ38_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 4.540e-50
Identity = 80/100 (80.00%), Postives = 91/100 (91.00%), Query Frame = 0

Query:    1 MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFSND 100
            MVKI  SS IDLIKYP+ T KT LL ENNQYTFLVDP+LNKL+IKKAIEFLF+VK+IK+NSCNLPKKKRRVG+F GI+PRYKKVIVKLAKD+KI+LFS +
Sbjct:    1 MVKIKLSSIIDLIKYPVTTPKTLLLLENNQYTFLVDPKLNKLNIKKAIEFLFNVKVIKVNSCNLPKKKRRVGRFIGIRPRYKKVIVKLAKDDKINLFSKN 100

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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A8F0JZN8_9PHAE (Ribosomal protein L23 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZN8_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 5.140e-49
Identity = 76/100 (76.00%), Postives = 89/100 (89.00%), Query Frame = 0

Query:    1 MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFSND 100
            M +I FSS+IDLIKYP+ T+KT+LL ENNQYTFLVDP L K+++KKAIEFLF+VK+IK+NSCNLPKKKRRVGQF G+KPRYKKVIVKLAK+N ID  S D
Sbjct:    1 MARIKFSSTIDLIKYPISTNKTSLLLENNQYTFLVDPVLTKINVKKAIEFLFNVKVIKVNSCNLPKKKRRVGQFIGVKPRYKKVIVKLAKENTIDFSSTD 100

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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A8F0JZQ2_9PHAE (Ribosomal protein L23 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZQ2_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 6.000e-48
Identity = 76/100 (76.00%), Postives = 89/100 (89.00%), Query Frame = 0

Query:    1 MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFSND 100
            M +I FSSSIDLIK P+IT KTNLL ENNQYTFLVDP+L K+++K+AIEFLF+V +IKINSCNLPKKKRR+G+  G +PRYKKVIVKLAKDNKIDLFS +
Sbjct:    1 MARITFSSSIDLIKCPVITIKTNLLLENNQYTFLVDPKLTKVNVKQAIEFLFNVNVIKINSCNLPKKKRRMGKSIGFRPRYKKVIVKLAKDNKIDLFSTN 100

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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A141BSN9_9PHAE (50S ribosomal protein L23, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSN9_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 8.530e-48
Identity = 75/99 (75.76%), Postives = 89/99 (89.90%), Query Frame = 0

Query:    1 MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFSN 99
            MVK   SS IDLIKYP+ T KT LL ENNQYTF+VDP+LNK +IKK+IEFLF+VK+IK+NSCNLPKKKRRVG+FTG++PRYKKVIVKLA ++KI+LFSN
Sbjct:    1 MVKRKLSSLIDLIKYPVTTPKTLLLLENNQYTFMVDPKLNKFNIKKSIEFLFNVKVIKVNSCNLPKKKRRVGRFTGVRPRYKKVIVKLANNDKIELFSN 99

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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A2I4Q2I3_9PHAE (50S ribosomal protein L23, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I3_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.580e-47
Identity = 76/100 (76.00%), Postives = 87/100 (87.00%), Query Frame = 0

Query:    1 MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFSND 100
            M KINFS+S+DLIK PL T KT+ LFE NQYTFLVDP+L+K +IKKAIEFLF VKIIKIN+CNLPKK RRVGQ  GI+PRYKKV+VKLAK+N ID FS+D
Sbjct:    1 MAKINFSTSLDLIKQPLTTLKTSQLFEKNQYTFLVDPKLDKPTIKKAIEFLFSVKIIKINTCNLPKKTRRVGQLRGIRPRYKKVVVKLAKENTIDFFSSD 100

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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A8F0F780_9PHAE (Ribosomal protein L23 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F780_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 7.010e-47
Identity = 74/100 (74.00%), Postives = 87/100 (87.00%), Query Frame = 0

Query:    1 MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFSND 100
            M +IN +SSIDLIKYP+ T KTNLL ENNQYTFLVD ++ K++IKKAIE LF+VK+IKINSCNLPKKKRRVGQ  GI+PRYKKV++KLAK+N ID FS D
Sbjct:    1 MAQININSSIDLIKYPMTTDKTNLLLENNQYTFLVDRKMTKIAIKKAIELLFNVKVIKINSCNLPKKKRRVGQKVGIRPRYKKVVIKLAKENIIDFFSMD 100

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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A8E5FAP4_9PHAE (Ribosomal protein L23 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5FAP4_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.960e-39
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 0

Query:    1 MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFS 98
            M+K+  +SSIDLIKYPL T+K   L   NQYTFLVDPRL K++IKKAIEFLFD+KIIKINSCNLP K+RRV +  GIK RYKKVI+K+AK+ KI+  S
Sbjct:    1 MIKMELNSSIDLIKYPLNTTKAKGLISKNQYTFLVDPRLTKINIKKAIEFLFDIKIIKINSCNLPIKRRRVRKSIGIKSRYKKVIIKVAKNQKINFLS 98

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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: B7T1Y2_VAULI (50S ribosomal protein L23, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Y2_VAULI)

HSP 1 Score: 131 bits (330), Expect = 6.880e-38
Identity = 59/100 (59.00%), Postives = 81/100 (81.00%), Query Frame = 0

Query:    1 MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEFLFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFSND 100
            M  +N + +IDLIKYPLIT KT  L  NNQYTF+VDP+++K  IK+ +E++F++KIIK+N+C +P+KKRRVG+F GIKP YKK IVKL+K+  I+LFS +
Sbjct:    1 MTNLNIADNIDLIKYPLITDKTIQLLNNNQYTFIVDPKISKNKIKQTLEYIFNIKIIKVNTCQIPRKKRRVGRFLGIKPNYKKAIVKLSKNYTINLFSQN 100

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1I9LVJ8_9PHAE	1.040e-57	89.00	50S ribosomal protein L23, chloroplastic n=8 Tax=E...	[more]
A0A0R6LUV2_UNDPI	8.240e-55	85.71	50S ribosomal protein L23, chloroplastic n=25 Tax=...	[more]
A0A2R4QQ38_9PHAE	4.540e-50	80.00	50S ribosomal protein L23 n=3 Tax=Fucaceae TaxID=3...	[more]
A0A8F0JZN8_9PHAE	5.140e-49	76.00	Ribosomal protein L23 n=1 Tax=Desmarestia aculeata...	[more]
A0A8F0JZQ2_9PHAE	6.000e-48	76.00	Ribosomal protein L23 n=1 Tax=Chorda asiatica TaxI...	[more]
A0A141BSN9_9PHAE	8.530e-48	75.76	50S ribosomal protein L23, chloroplastic n=13 Tax=...	[more]
A0A2I4Q2I3_9PHAE	5.580e-47	76.00	50S ribosomal protein L23, chloroplastic n=1 Tax=D...	[more]
A0A8F0F780_9PHAE	7.010e-47	74.00	Ribosomal protein L23 n=1 Tax=Protohalopteris sp. ...	[more]
A0A8E5FAP4_9PHAE	3.960e-39	68.37	Ribosomal protein L23 n=1 Tax=Phaeophyceae sp. Tax...	[more]
B7T1Y2_VAULI	6.880e-38	59.00	50S ribosomal protein L23, chloroplastic n=1 Tax=V...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..100 e-value: 1.0E-28 score: 101.5
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 11..95 e-value: 1.2E-26 score: 92.9
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_B	Ribosomal_L23_B	coord: 10..99 score: 21.357
None	No IPR available	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 11..97
None	No IPR available	PANTHER	PTHR11620:SF62	50S RIBOSOMAL PROTEIN L23, CHLOROPLASTIC	coord: 11..97
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 9..99

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig12359	contig	E-siliculosus-1a_F_contig12359:1093..1395 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig12359.1471.1	mRNA_E-siliculosus-1a_F_contig12359.1471.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig12359 459..1395 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig12359.1471.1 ID=prot_E-siliculosus-1a_F_contig12359.1471.1|Name=mRNA_E-siliculosus-1a_F_contig12359.1471.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=101bp
MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEF
LFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFSND
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR013025	Ribosomal_L25/23
IPR012677	Nucleotide-bd_a/b_plait_sf