mRNA_E-siliculosus-1a_F_contig12359.1471.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12359.1471.1
Unique NamemRNA_E-siliculosus-1a_F_contig12359.1471.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: D1J751_ECTSI (50S ribosomal protein L4, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J751_ECTSI)

HSP 1 Score: 402 bits (1033), Expect = 1.950e-139
Identity = 205/213 (96.24%), Postives = 211/213 (99.06%), Query Frame = 1 
Query:    1 DKILTFPLKLLTGEENNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIENKTSIFINLFKGCDISFSKNITFIVPTIEENLFKVTKNIKTVTIMRADTLNLITLLESDHLFINKDSLKIIEEIYNG 639
            DKILTFPLKLLTGEE NETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEP+ITIIDH+FSSI+NKT+IFINLFKGCDISFSKNITFIVP IEENLFKVT+NIKTVTIMRADTLNLITLLESDHLFI+KDSLKIIEEIYNG
Sbjct:   20 DKILTFPLKLLTGEEKNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPSITIIDHNFSSIDNKTNIFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLESDHLFISKDSLKIIEEIYNG 232
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A1I9LVD9_9PHAE (50S ribosomal protein L4, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVD9_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 1.650e-119
Identity = 172/213 (80.75%), Postives = 195/213 (91.55%), Query Frame = 1 
Query:    1 DKILTFPLKLLTGEENNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIENKTSIFINLFKGCDISFSKNITFIVPTIEENLFKVTKNIKTVTIMRADTLNLITLLESDHLFINKDSLKIIEEIYNG 639
            DK+LTFP+K LTGE N E  +LTL++KEGQETDNYI+YRAY+AQRTNERQGT NTLTRAEV+GGGRKPWRQKGTG+AR+GSNRSPLWKGGGVSFGPKPKTY NK+NRKEWQLA+R LI+LKEP IT+ID+DFSS+ENKT+IFI LFK C+I FSKNIT I+P IE+NL K T+NIKTVT+MRADTLNLITLL SDHLFI+KDSLKIIEE YNG
Sbjct:   20 DKVLTFPIKFLTGENNKEIATLTLKVKEGQETDNYIIYRAYVAQRTNERQGTRNTLTRAEVRGGGRKPWRQKGTGKARSGSNRSPLWKGGGVSFGPKPKTYTNKINRKEWQLAIRALILLKEPIITVIDYDFSSLENKTNIFIQLFKVCNIGFSKNITIILPNIEDNLVKATRNIKTVTLMRADTLNLITLLGSDHLFISKDSLKIIEETYNG 232
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A7T8G5K9_SCYLO (50S ribosomal protein L4, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5K9_SCYLO)

HSP 1 Score: 340 bits (873), Expect = 9.760e-115
Identity = 170/213 (79.81%), Postives = 191/213 (89.67%), Query Frame = 1 
Query:    1 DKILTFPLKLLTGEENNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIENKTSIFINLFKGCDISFSKNITFIVPTIEENLFKVTKNIKTVTIMRADTLNLITLLESDHLFINKDSLKIIEEIYNG 639
            DK+LTFP+K L G +N ET +LTLQ+KE QET+NYI+YRAYIAQR NERQGTV+TLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPK Y NKLNRKEWQLAVR LI+LKEP I +IDHDF+S++ KT  FINLFK C+I+FS+NITFIVP IEE+LFK T+NIKTV +MRADTLNLIT+L SDHL I+KDSLKIIEE YNG
Sbjct:   44 DKVLTFPIKPLVGGDNKETATLTLQVKEKQETENYIIYRAYIAQRINERQGTVSTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKLYTNKLNRKEWQLAVRSLIMLKEPIINVIDHDFNSMDIKTKAFINLFKTCNINFSQNITFIVPRIEESLFKATRNIKTVKLMRADTLNLITILRSDHLLISKDSLKIIEETYNG 256
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A6B7EYM7_9PHAE (50S ribosomal protein L4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYM7_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 1.290e-114
Identity = 175/214 (81.78%), Postives = 195/214 (91.12%), Query Frame = 1 
Query:    1 DKILTFPLKLLTGEENN-ETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIENKTSIFINLFKGCDISFSKNITFIVPTIEENLFKVTKNIKTVTIMRADTLNLITLLESDHLFINKDSLKIIEEIYNG 639
            DKILTFP K+LTG + + ETV+LTL+IKEGQET+NYI+YRAYIAQRTNERQGTVNTLTRAEVKGGGRKPW+QKGTGRARAGSNRSPLWKGGGVSFGPKPK Y NK+NRKEWQLAVR LIILKEP IT+IDHDFSSI  KT+ FINLF+ C+++FS+ IT IVPTI E+LFK T+NIKT  IMRADTLNLITLLESD+LFI+KDSLKIIEE YNG
Sbjct:   22 DKILTFPTKVLTGSDTSKETVTLTLKIKEGQETNNYIIYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWKQKGTGRARAGSNRSPLWKGGGVSFGPKPKIYTNKINRKEWQLAVRSLIILKEPIITVIDHDFSSI-TKTNDFINLFQTCNVNFSQKITLIVPTIAESLFKATRNIKTTNIMRADTLNLITLLESDYLFISKDSLKIIEETYNG 234
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BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A0R6LUU1_UNDPI (50S ribosomal protein L4, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUU1_UNDPI)

HSP 1 Score: 259 bits (663), Expect = 1.750e-83
Identity = 132/212 (62.26%), Postives = 169/212 (79.72%), Query Frame = 1 
Query:    4 KILTFPLKLLTGEENNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIENKTSIFINLFKGCDISFSKNITFIVPTIEENLFKVTKNIKTVTIMRADTLNLITLLESDHLFINKDSLKIIEEIYNG 639
            KILTFP+K+LTGEE+ + ++LTL++KE   T NY++ RAY+AQR+NERQGT NTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPK Y +K+NRKEWQL++R L+I K+ +ITI+D+ F+ +E KTS  I +    +I+  +N   +VP I+E L K T+NIKT+ ++ A+ LNL  +L + +L I KDSLK IEE YNG
Sbjct:    5 KILTFPVKILTGEESGDEITLTLKLKEATNTINYVIQRAYLAQRSNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKFYSSKINRKEWQLSLRSLLIAKQKDITIVDN-FNFLEYKTSNIIKVLNTFNINLFENTLIVVPKIDEKLLKSTRNIKTIKLIVANNLNLKQILLAKNLLITKDSLKTIEETYNG 215
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A8F0FA21_9PHAE (Ribosomal protein L4 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FA21_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 2.650e-80
Identity = 124/212 (58.49%), Postives = 167/212 (78.77%), Query Frame = 1 
Query:    4 KILTFPLKLLTGEENNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIENKTSIFINLFKGCDISFSKNITFIVPTIEENLFKVTKNIKTVTIMRADTLNLITLLESDHLFINKDSLKIIEEIYNG 639
            K++TFP+K +TG+E+ + ++L L++K+   T+NY++ RAY+ QR NERQGT NTLTRAEVKGGGRKPW+QKGTGRARAGSN SPLWKGGGVSFGPKPK Y NK+NRKEWQL++R L++ KE +IT++++ F+ ++ KT+  I + +  +I+  +N   IVP IEE L K TKNIKT+ ++ A+ LNL  +L + +LFI KDSLK IEE YNG
Sbjct:    5 KLITFPIKSITGKESGDKITLNLKLKDVVTTNNYVIQRAYLTQRLNERQGTANTLTRAEVKGGGRKPWKQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLVAKEKDITVLEN-FNLLDYKTNDIIKILQSFNINLFENTLIIVPKIEEKLIKSTKNIKTIKVLVANNLNLKQILLAQNLFITKDSLKTIEETYNG 215
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A8F0F722_AKKLU (Ribosomal protein L4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F722_AKKLU)

HSP 1 Score: 251 bits (641), Expect = 3.750e-80
Identity = 129/212 (60.85%), Postives = 161/212 (75.94%), Query Frame = 1 
Query:    4 KILTFPLKLLTGEENNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIENKTSIFINLFKGCDISFSKNITFIVPTIEENLFKVTKNIKTVTIMRADTLNLITLLESDHLFINKDSLKIIEEIYNG 639
            KILTFP+KLLTG+E+ + ++LTL+ KE  +  NY++ RAY+ QR NERQGT NTLTRAEVKGGGRKPWRQKGTGRARAGSN SPLWKGGGVSFGPKPK Y NK+NRKEWQL++R L+I K+ +IT+ID+  + +E KT   I      DI+   N   IVP IE+ L K T+NIKT+ ++ A+ LNL  +L + +L + KDSLK IEE YNG
Sbjct:    5 KILTFPIKLLTGKESGDKITLTLKSKEITDKSNYVIQRAYLTQRYNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLIAKQKDITVIDN-INPLEYKTDNIIKTLNSFDINLFDNTLLIVPKIEDKLLKSTRNIKTIKVIVANNLNLKQILLAKNLLVTKDSLKTIEETYNG 215
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A8F0FAT9_9PHAE (Ribosomal protein L4 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT9_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 3.480e-78
Identity = 128/213 (60.09%), Postives = 161/213 (75.59%), Query Frame = 1 
Query:    1 DKILTFPLKLLTGEENNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIENKTSIFINLFKGCDISFSKNITFIVPTIEENLFKVTKNIKTVTIMRADTLNLITLLESDHLFINKDSLKIIEEIYNG 639
            +KILTFP+KLLTGEE+ + ++LTL+ KE   T NYI++RAY+ Q  NERQG  NTLTR+EV+GGGRKPW+QKGTGRARAGS  SPLWKGGGVSFGPKPK Y NK+NRKEWQL +R L+I K+ +ITII++ FSS   KT+  I   K  +I   +    IVP I+E L K T+NIKT+ ++ A+ LN+  +L + +LFI KDSLK IEE YNG
Sbjct:    4 EKILTFPIKLLTGEESGDNITLTLKSKELSNTSNYIIHRAYLTQLYNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKPKLYSNKINRKEWQLGLRNLLIAKQKDITIINN-FSSTNYKTNDIIKALKVFNIKIFEKTLIIVPKIDEKLLKSTRNIKTIKLIVANNLNIKQILLAKNLFITKDSLKTIEETYNG 215
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: D1GJT1_FUCVE (50S ribosomal protein L4, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJT1_FUCVE)

HSP 1 Score: 246 bits (627), Expect = 4.930e-78
Identity = 125/213 (58.69%), Postives = 163/213 (76.53%), Query Frame = 1 
Query:    1 DKILTFPLKLLTGEENNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIENKTSIFINLFKGCDISFSKNITFIVPTIEENLFKVTKNIKTVTIMRADTLNLITLLESDHLFINKDSLKIIEEIYNG 639
            +K LTFP+KLLTG E+ + ++LTL++K+  ET+NY+++RAY+ QR NERQGT +TLTRAEV+GGGRKP RQKG GRARAGSNRSPLWKGGGVSFGPKPK Y NK+NRKEW+L +R L+I K+ NI I+D+  +  E KT   I + K  +I+ S+   FI+P IE+NL + T NIKT+ +  A  LNL  +L + +L + KDSLKIIE+ YNG
Sbjct:    4 EKTLTFPIKLLTGNESKDKITLTLKVKDANETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPLRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIVDN-LNITEYKTKNIIKILKIFNINLSEKTLFILPKIEKNLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLKIIEDTYNG 215
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Match: A0A141BSP0_9PHAE (50S ribosomal protein L4, chloroplastic n=13 Tax=Sargassum TaxID=3015 RepID=A0A141BSP0_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 7.940e-74
Identity = 122/212 (57.55%), Postives = 159/212 (75.00%), Query Frame = 1 
Query:    4 KILTFPLKLLTGEENNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPNITIIDHDFSSIENKTSIFINLFKGCDISFSKNITFIVPTIEENLFKVTKNIKTVTIMRADTLNLITLLESDHLFINKDSLKIIEEIYNG 639
            KILTF +K L G+ +  T+SL  ++KE  +T+NY++ RAY+ QR NERQGT NTLTRAEV+GGGRKPWRQKG GRARAGSN SPLWKGGGVSFGPKPK Y+NK+NRKEW+L +R L++ KE NIT+I++  S  E KT   I + +   I+ +K+   I+PTIE+ L + T NIKT+ +  A+ LNL  +L + +L + KDSLKIIE+ YNG
Sbjct:    5 KILTFTIKSLKGDTDKTTLSL--KVKELNDTNNYVIQRAYLTQRLNERQGTANTLTRAEVRGGGRKPWRQKGMGRARAGSNTSPLWKGGGVSFGPKPKLYLNKINRKEWKLGLRNLLVAKEKNITVIEN-ISITEYKTKNIIKILEDFSINLAKDTLIILPTIEKELLRSTSNIKTIKLTLANNLNLKQILLAKNLLVIKDSLKIIEDTYNG 213
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12359.1471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J751_ECTSI1.950e-13996.2450S ribosomal protein L4, chloroplastic n=2 Tax=Ec... [more]
A0A1I9LVD9_9PHAE1.650e-11980.7550S ribosomal protein L4, chloroplastic n=1 Tax=Pl... [more]
A0A7T8G5K9_SCYLO9.760e-11579.8150S ribosomal protein L4, chloroplastic n=5 Tax=Sc... [more]
A0A6B7EYM7_9PHAE1.290e-11481.7850S ribosomal protein L4 n=1 Tax=Cladosiphon okamu... [more]
A0A0R6LUU1_UNDPI1.750e-8362.2650S ribosomal protein L4, chloroplastic n=28 Tax=L... [more]
A0A8F0FA21_9PHAE2.650e-8058.49Ribosomal protein L4 n=1 Tax=Chorda asiatica TaxID... [more]
A0A8F0F722_AKKLU3.750e-8060.85Ribosomal protein L4 n=1 Tax=Akkesiphycus lubricus... [more]
A0A8F0FAT9_9PHAE3.480e-7860.09Ribosomal protein L4 n=1 Tax=Desmarestia aculeata ... [more]
D1GJT1_FUCVE4.930e-7858.6950S ribosomal protein L4, chloroplastic n=3 Tax=Fu... [more]
A0A141BSP0_9PHAE7.940e-7457.5550S ribosomal protein L4, chloroplastic n=13 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12359contigE-siliculosus-1a_F_contig12359:459..1395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size303
Model size937
Exons1
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGs2SAK4@2759,COG0089@1
EggNOG free text desc.rRNA binding
GOsGO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
KEGG ModuleM00178,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02892
Preferred namerpl23
Seed eggNOG ortholog2880.D1J750
Seed ortholog evalue2.4e-47
Seed ortholog score194.5
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.0371737-UTR-E-siliculosus-1a_F_contig12359:458..10921622927756.0371737-UTR-E-siliculosus-1a_F_contig12359:458..1092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12359 459..1092 +
1696318667.7499568-UTR-E-siliculosus-1a_F_contig12359:458..10921696318667.7499568-UTR-E-siliculosus-1a_F_contig12359:458..1092Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12359 459..1092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.047632-CDS-E-siliculosus-1a_F_contig12359:1092..13951622927756.047632-CDS-E-siliculosus-1a_F_contig12359:1092..1395Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12359 1093..1395 +
1696318667.7612793-CDS-E-siliculosus-1a_F_contig12359:1092..13951696318667.7612793-CDS-E-siliculosus-1a_F_contig12359:1092..1395Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12359 1093..1395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12359.1471.1prot_E-siliculosus-1a_F_contig12359.1471.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12359 1093..1395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12359.1471.1

>prot_E-siliculosus-1a_F_contig12359.1471.1 ID=prot_E-siliculosus-1a_F_contig12359.1471.1|Name=mRNA_E-siliculosus-1a_F_contig12359.1471.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=101bp
MVKINFSSSIDLIKYPLITSKTNLLFENNQYTFLVDPRLNKLSIKKAIEF
LFDVKIIKINSCNLPKKKRRVGQFTGIKPRYKKVIVKLAKDNKIDLFSND
*
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mRNA from alignment at E-siliculosus-1a_F_contig12359:459..1395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12359.1471.1 ID=mRNA_E-siliculosus-1a_F_contig12359.1471.1|Name=mRNA_E-siliculosus-1a_F_contig12359.1471.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=937bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12359:459..1395+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATAAAATTTTAACCTTTCCTCTTAAACTTTTAACAGGAGAAGAAAATAA
CGAAACAGTAAGCTTAACTTTACAAATAAAAGAAGGACAAGAGACAGATA
ACTATATTCTTTATCGCGCCTATATTGCACAAAGAACAAACGAAAGACAA
GGAACAGTAAATACTTTAACAAGAGCAGAAGTTAAAGGTGGAGGCCGTAA
ACCTTGGAGACAAAAAGGAACTGGACGAGCGCGAGCTGGATCAAATCGTT
CACCTCTTTGGAAAGGTGGAGGTGTTTCTTTTGGACCAAAACCTAAAACA
TATATAAATAAACTAAATCGTAAAGAATGGCAGCTAGCTGTACGAGGTCT
AATTATATTAAAAGAGCCAAATATTACTATAATAGATCATGATTTTAGTT
CGATAGAGAATAAAACGAGTATCTTTATTAATTTATTTAAAGGATGTGAT
ATAAGTTTTTCTAAAAATATAACATTTATTGTTCCAACTATAGAGGAAAA
TTTATTTAAAGTAACAAAAAATATAAAAACTGTTACTATAATGCGTGCCG
ATACTCTAAATTTGATAACATTATTGGAATCAGACCATTTATTTATTAAT
AAAGATAGTTTAAAAATAATTGAGGAAATTTATAATGGTTAAAATAAATT
TTAGTTCAAGTATTGATTTGATCAAATATCCCCTTATAACTTCTAAAACA
AATTTATTATTTGAAAATAACCAATACACATTCTTAGTCGACCCTAGATT
AAATAAGTTAAGTATAAAAAAAGCAATTGAATTTTTATTTGATGTTAAAA
TAATTAAAATTAATAGTTGTAATTTACCTAAAAAAAAGCGTCGTGTAGGA
CAATTTACTGGTATTAAGCCACGTTATAAAAAAGTAATAGTTAAATTAGC
AAAGGATAATAAAATTGATCTCTTTTCTAATGACTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12359:459..1395+

>mRNA_E-siliculosus-1a_F_contig12359.1471.1 ID=mRNA_E-siliculosus-1a_F_contig12359.1471.1|Name=mRNA_E-siliculosus-1a_F_contig12359.1471.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12359:459..1395+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTAAAATAAATTTTAGTTCAAGTATTGATTTGATCAAATATCCCCT
TATAACTTCTAAAACAAATTTATTATTTGAAAATAACCAATACACATTCT
TAGTCGACCCTAGATTAAATAAGTTAAGTATAAAAAAAGCAATTGAATTT
TTATTTGATGTTAAAATAATTAAAATTAATAGTTGTAATTTACCTAAAAA
AAAGCGTCGTGTAGGACAATTTACTGGTATTAAGCCACGTTATAAAAAAG
TAATAGTTAAATTAGCAAAGGATAATAAAATTGATCTCTTTTCTAATGAC
TAAATGGTTAAAATAAATTTTAGTTCAAGTATTGATTTGATCAAATATCC
CCTTATAACTTCTAAAACAAATTTATTATTTGAAAATAACCAATACACAT
TCTTAGTCGACCCTAGATTAAATAAGTTAAGTATAAAAAAAGCAATTGAA
TTTTTATTTGATGTTAAAATAATTAAAATTAATAGTTGTAATTTACCTAA
AAAAAAGCGTCGTGTAGGACAATTTACTGGTATTAAGCCACGTTATAAAA
AAGTAATAGTTAAATTAGCAAAGGATAATAAAATTGATCTCTTTTCTAAT
GACTAA
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