mRNA_E-siliculosus-1a_F_contig1227.1430.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1227.1430.1
Unique NamemRNA_E-siliculosus-1a_F_contig1227.1430.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1227.1430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1227contigE-siliculosus-1a_F_contig1227:25689..28493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size216
Model size269
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1227.1430.1prot_E-siliculosus-1a_F_contig1227.1430.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1227 25708..28459 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927745.3655515-UTR-E-siliculosus-1a_F_contig1227:25688..257071622927745.3655515-UTR-E-siliculosus-1a_F_contig1227:25688..25707Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1227 25689..25707 +
1696318664.3934512-UTR-E-siliculosus-1a_F_contig1227:25688..257071696318664.3934512-UTR-E-siliculosus-1a_F_contig1227:25688..25707Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1227 25689..25707 +
1622927745.3974164-UTR-E-siliculosus-1a_F_contig1227:28459..284931622927745.3974164-UTR-E-siliculosus-1a_F_contig1227:28459..28493Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1227 28460..28493 +
1696318664.4211338-UTR-E-siliculosus-1a_F_contig1227:28459..284931696318664.4211338-UTR-E-siliculosus-1a_F_contig1227:28459..28493Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1227 28460..28493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927745.3784542-CDS-E-siliculosus-1a_F_contig1227:25707..258571622927745.3784542-CDS-E-siliculosus-1a_F_contig1227:25707..25857Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1227 25708..25857 +
1696318664.4016228-CDS-E-siliculosus-1a_F_contig1227:25707..258571696318664.4016228-CDS-E-siliculosus-1a_F_contig1227:25707..25857Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1227 25708..25857 +
1622927745.3879633-CDS-E-siliculosus-1a_F_contig1227:28393..284591622927745.3879633-CDS-E-siliculosus-1a_F_contig1227:28393..28459Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1227 28394..28459 +
1696318664.4113615-CDS-E-siliculosus-1a_F_contig1227:28393..284591696318664.4113615-CDS-E-siliculosus-1a_F_contig1227:28393..28459Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1227 28394..28459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1227.1430.1

>prot_E-siliculosus-1a_F_contig1227.1430.1 ID=prot_E-siliculosus-1a_F_contig1227.1430.1|Name=mRNA_E-siliculosus-1a_F_contig1227.1430.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=72bp
MSIFTNPNQNRQRRSRPTAACGVLQRVTSGRSRTSIRCPPTAIHWPVPLL
PPDNQQRQGKGGSRSNGGGQS*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1227:25689..28493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1227.1430.1 ID=mRNA_E-siliculosus-1a_F_contig1227.1430.1|Name=mRNA_E-siliculosus-1a_F_contig1227.1430.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2805bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1227:25689..28493+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCGTGGTTCCCTAAGCGCATGAGCATCTTCACCAACCCCAACCAAAACA
GGCAGCGTCGCTCACGCCCTACAGCTGCATGCGGCGTGCTTCAGCGGGTA
ACCTCCGGCAGGTCTAGGACGAGCATTCGGTGTCCTCCCACTGCCATACA
TTGGCCTGTCCCTTTGTTGGTGAGTCTCAGTCCTTGGCAAATGGCCACAA
GTTGCTGGCAACATTTAGTTACAGCAGTGCAGCTGTCTAGGGTAGTGGCT
CACGGTGGCGATTGGGTTTGGTTTGGGTGTGGCAACACCCTGATCCTGTG
ATGCTGGTGCGGCCGAAGTCTTTGGAGCAGTTGGCCGTAGTGGGACACGA
CCTACTGTTGTATCACTGCCGTTCACCTGGGAAAACAGCACGTGGTACTG
TACTACGTACCGTAGACGACACAAGATAACACGCCCCGGTGATGACATTT
TCCTACAGCACTCGAAGCCCAATGGGGACACTTTGGGGATCTGTACAGCA
CTCGAATGTCTATTTTTACCGCACTGAAGTCACCTCAGGCTCCGCTGTGT
GCAACGCACGTGAGAACCCTTGGTCTATCATGCTTGGCTGAGGTGGTGCG
CTGCGTGATATGTTGTCTGAAGCCTCTCCTCGGCCTCTGACTTGCTGTAC
ACATCTCCCAACACCCGCGTGTCCCCTAGGTCGAAAAACTGTATGCATAC
ATCGCCTGGTACTGGAAAAATTGCTGACTTGGCTTCAGCATAAAAAGTGT
CCCCACGTGTTTGGGGGACACTGTTCATATTCGGGGACACTGTTCATTTT
GAAGCCAAGTCACCCTTTGTCTGGCAAGGAGCTCAGATTCTTTGGGGGGA
CTGTAGCCCCTCGACCAATGGCTGACAAATATTTTTTCGGCACTTTTTTG
CGGAGAGACTGAGTGAGTCCTGGGAGGGTTAACACTATTGTGTCACCGAG
TGTGGTATCCTGTGGGGGATGTGGTATCTTAAGTAACCCGGGTGATAAAG
TGCAGCTCGCAGGGGCCCCTAAGGGGGTGTGATAAACCAAGGTGTGTTAT
AGCACGTCCGAATACCCACAGGGTGTGCTTGGGGGTGTGATAATGAGGGT
GTGTGATAAAAAGGGGTTGATGACACTGCTTGTAGAGTCGAACCGCTGCT
GCCGCACACTTGAAGGGGTGTGGTATTGCGGGTGCGATAGCAATGCCTGT
ACGAACACTTGTGGTTCTGCGGAATGCTGTAAAAAACAGAGGAACTCACT
GGAGGTGCAAAACTCCTGAGCACATGACCTCGGTGGCCACAGAGTGCGCC
ATCCGTCCTGCCCCCCTCGCACAGAAACGTAGGCTGCTGAAAATATCTTG
CTATTGGGTACGACAAAAGAGATTTACGCAGATGTTTGTGTGTGCGATGC
CCACGGGGCAGATGCTGTGTCACCCCGGTGATAGAAGGGGGGGGGGGGGG
GCGTACTCTTATGTTTTGCATGTCTTAGCGGTTAGACCGTTGACCTCGCG
TCCTCGAGAGGACGGAGCATTGTTCCCACAGGATCGATCACCGATGGCCA
ATCGTTCCTTCCTACTTTGCCAAAGGTGGCTCAAAAATGTCTTTACCTAG
TCTGTCTATCCTAACGATATCCCTTCCCGCCTTTTCAAACCACTTCCTAA
TCCCCAGTACAGCTACCGTCATCTCCTCTCTATTCCATGCCTCAAACATC
TTCCTGTACCTCCCCTCTATTTTTCCCAGCTCAGTCATATACACTTCCCT
CTCCTTTTCGTACCACGGACATTCCGCGACTACATGAACACGGTCTTCGC
ATTCGAAGCCGCAATCACATTTGAACTTGTCGTCTTCGTCGTCTACCGTC
CTATATCTTCGTCGACGTTCTCGAAGGCCTATGTCCCCGGTCCTGAATTT
GACCTTAAGCTTTGTCCCTGCATCCATTGGTCCATGTAGGTAATCCTTGA
ACCCCCTGTTCCTTCTTTCAACATTTCCGCACACTTCCAGACCCTCCTTA
TCCTCGGATTCTTTCCTTAGATTCTGTTCTTCTCTCTCGGCACAAGCAAC
ATACATCTTCTTCTTGAACCCCTGTAGACCCTCCGTTTCCAGCGTTTCAT
CTTCGACGATGTCTAACCCCTTCATACGTCCTCTACAACCTTGACCCATT
CCGTGGGTTGTCTACCCCTCTTTTTGTTTGCCCACTTCGCCTCCCATACT
ATTCTCGGCAACCTCTCCTCTCCCATGCCGCACATGCGATACTGCCATGT
CAGCTTCCTTGAGTCTCTTCCCGACCGTAGGGATTGGATCCCCAATTCTG
CCCTGACGGCTGCATTACTTGTGCGCTTGGAGCATCTAAGGATGATTTTC
GCTGCTTTCATCTGCACCGCCTCGAGTTCTTTCACTACCTTTTTCTTTCC
TTCCCATACTTCTCCGGCGTACTCTAGCGGCGGTACGATTACGCTCTTCA
AACCCGTCAATTTGATGCGTGTATCGAGGTGTCGGGGAGGGGGTGAATGT
ATGCGGCGTATTCTCAAGAGGTGTGTTGTCTTCTGTAGCCCCGGTGATAA
TCGATGATGTGTCAGAAACGCCCAAAATTTACACCGGGGTGTCGTATTCT
GTAGGTGTGTGGTTTCTCATGTGGGTGTGCTATCTTGTGTGGTCTACGTT
ATGCCATCGCGCGTGCTTTCACCAACTCTTCTTACAATCCCCGGACCCGC
GGCAGCCTCCCGACAATCAGCAGCGACAAGGCAAGGGCGGTAGTCGAAGC
AACGGGGGCGGCCAAAGCTGAAGCAGCAGCCTTGGGATCACGTATTGACC
CGCCG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1227:25689..28493+

>mRNA_E-siliculosus-1a_F_contig1227.1430.1 ID=mRNA_E-siliculosus-1a_F_contig1227.1430.1|Name=mRNA_E-siliculosus-1a_F_contig1227.1430.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1227:25689..28493+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCATCTTCACCAACCCCAACCAAAACAGGCAGCGTCGCTCACGCCC
TACAGCTGCATGCGGCGTGCTTCAGCGGGTAACCTCCGGCAGGTCTAGGA
CGAGCATTCGGTGTCCTCCCACTGCCATACATTGGCCTGTCCCTTTGTTG
ATGAGCATCTTCACCAACCCCAACCAAAACAGGCAGCGTCGCTCACGCCC
TACAGCTGCATGCGGCGTGCTTCAGCGGGTAACCTCCGGCAGGTCTAGGA
CGAGCATTCGGTGTCCTCCCACTGCCATACATTGGCCTGTCCCTTTGTTG
CCTCCCGACAATCAGCAGCGACAAGGCAAGGGCGGTAGTCGAAGCAACGG
GGGCGGCCAAAGCTGACCTCCCGACAATCAGCAGCGACAAGGCAAGGGCG
GTAGTCGAAGCAACGGGGGCGGCCAAAGCTGA
back to top