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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1424.1 vs. uniprot
Match: D7G8N9_ECTSI (Myb-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N9_ECTSI) HSP 1 Score: 576 bits (1485), Expect = 7.870e-203 Identity = 297/329 (90.27%), Postives = 300/329 (91.19%), Query Frame = 2
Query: 269 MPPLAAGFVAPTPIAAQPQRRLPPWCEPVSFPPAWDSSRPVPASSKPPASNCNYRSCAARGVRPTSATTSHAGASXXXXXXXXXXXXXXXXGSATSSSPSAVVTQAVEGSKHPAGGFANGALIPLAAEGGNSSGAEGATAVRVDKWGEAAEGNLAGEFEWEGGAEATWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGGEGGSGREGGERMAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTTMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQVGRDM 1255
MPPLAAGFVAPTPIAAQPQRRLPPWCEPVSFPPAWDSSRPVPASSKPPASNCNYRSCA RGVRPTSATTSHAGAS GSATSSSPSAVVTQAVEGS+HPAGGFANGALIPL+ EGG+SSGAEGATAVRV KWGEAAEGNLAGEFEWEGGAEA WTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGG EGGS RE GE MAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGT MTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQ M
Sbjct: 1 MPPLAAGFVAPTPIAAQPQRRLPPWCEPVSFPPAWDSSRPVPASSKPPASNCNYRSCAVRGVRPTSATTSHAGASPSGSSTPKTGANGPGAGSATSSSPSAVVTQAVEGSEHPAGGFANGALIPLSTEGGSSSGAEGATAVRVGKWGEAAEGNLAGEFEWEGGAEAAWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGAEGGSRRERGEVMAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQASSKM 329
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1424.1 vs. uniprot
Match: A0A836CN06_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN06_9STRA) HSP 1 Score: 180 bits (457), Expect = 5.240e-50 Identity = 90/171 (52.63%), Postives = 114/171 (66.67%), Query Frame = 2
Query: 758 AEATWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGGEGGSGREGGERM--------------AGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTTMTTAPIDISGRKIQDQYVATQCGVVYELGERRETD 1228
A+ WTEFEDWLLQDT++RYAIGSGKHVLW RMV EVPEL+ RTPQEAR RWL +TGRL+ R+GG +G+P ++ FY+QPP+L WEE+ + GSF G+V G GLADG + T +D++GR++ DQYV T+CG V+ELG RR D
Sbjct: 22 ADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLT-------DQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELED----GSFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGAD 181
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1230 |
| Model size | 1547 |
| Exons | 4 |
| Ec32 ortholog | Ec-22_002440.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | mitochondrion |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1226.1424.1 >prot_E-siliculosus-1a_F_contig1226.1424.1 ID=prot_E-siliculosus-1a_F_contig1226.1424.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1424.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=410bp
MVTFKHRSNAVAAALLLAHHRHGNMPPLAAGFVAPTPIAAQPQRRLPPWC
EPVSFPPAWDSSRPVPASSKPPASNCNYRSCAARGVRPTSATTSHAGASP
SGSSTPKTGADGSGAGSATSSSPSAVVTQAVEGSKHPAGGFANGALIPLA
AEGGNSSGAEGATAVRVDKWGEAAEGNLAGEFEWEGGAEATWTEFEDWLL
QDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGG
GEGGSGREGGERMAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFG
QRGLADGTTMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQVG
RDMTFFFAQTLCLVRDYFPVSVTLVNVPLFRFRALAASCYTGLLPLPPGQ
TPRQQSVQY* back to topmRNA from alignment at E-siliculosus-1a_F_contig1226:5941..8940- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1226.1424.1 ID=mRNA_E-siliculosus-1a_F_contig1226.1424.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1424.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3000bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1226:5941..8940- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCGGGCCGCCTGCTCTCTGCTCTCCTGCTCCCTGTCTGCTGTCACTCA
GCTTGGCTTTCTTCTCACGCACAGGCGCTGTGTTCCATTCACAGAGCATA
CCTCTGCCTTGCAGAAGGTGAAGTCTGGCGGAGCATTGGCAACGCGTGCA
GTGTCGCCAGCCCGCAGTGTGTGCAGCAGTTGCGCACGATACGAGCATGG
TAACGTTCAAACACCGAAGTAACGCTGTTGCGGCGGCGCTCCTGCTTGCC
CACCATCGACACGGAAACATGCCGCCTCTTGCGGCAGGCTTCGTTGCACC
CACCCCGATCGCCGCTCAGCCGCAGCGGCGGCTTCCACCCTGGTGTGAAC
CCGTATCGTTTCCGCCTGCTTGGGACTCGTCAAGGCCAGTGCCGGCAAGT
AGCAAACCGCCGGCTTCCAACTGCAACTACCGCTCCTGCGCCGCGCGAGG
TGTTCGACCAACGAGCGCAACGACTTCCCACGCGGGTGCTTCTCCTTCCG
GCAGCAGCACGCCGAAGACCGGTGCCGACGGTTCGGGTGCAGGGTCCGCT
ACTTCTTCATCACCTAGTGCGGTTGTCACGCAGGCAGTAGAAGGGAGCAA
GCACCCAGCAGGCGGGTTCGCAAATGGGGCTTTGATCCCATTGGCAGCGG
AGGGAGGCAACAGCAGCGGGGCAGAAGGAGCAACGGCGGTACGAGTAGAT
AAGTGGGGGGAGGCGGCGGAAGGGAACTTGGCGGGAGAGTTTGAGTGGGA
GGGCGGGGCAGAGGCTACATGGACCGAGTTCGAGGACTGGCTCCTTCAGG
ACACGTACTCCAGGTATGAACATTGTGAGCAGCGGTAGGTGAGCTTGATA
CATGTGGTAGAGGCGACTGCCTGTGTCAAATCAATACATGCCCTGGTACC
CGTGGACACTCCACCCTGCTTTAGACCAAGCTTGCTCTTGAGGACGATGT
TGGTACATACGGTATGATGGTGGTGACAATATAGGGTGGGGTGTGTGTTT
GTTTTGTGTTTTGTTTTGTTTTTGTTGTGGGTATTATTTAATTTTCGGTT
TTGGGTAGACAATATTGAGCTACGGTTCAAGAATTTGTAGTGATAATCCA
GCCCAAGCATCTTCATGCTGCACCGCGTTCCCGACAGCAAGCAGCCCGGG
CTACTATTAGTACACCATGATCCGCGCGTTGCTCGTTTGTTCACCAGGGC
TTCGAGGCTGTCGTGGTTGATAGGCTTTGGTATTGATTGTAGTAACGGTG
GCGTGAGAAAGAGATGCATCGTCAATCATCAGGTGACGGAACAAATGAGT
TCGTCTGCATGACGCTGTGAGCGATACACGAAGCATGGCTAGTTTGTGGA
GAACCCCGGGACACGGAGTAGGGATTGATTGGTGAACGATTCCCCCGTTG
CCCATCTCCATGCAGCAATTCTGCCCACCGCCGCTGGCCTTGTGATTTCA
ATGCATGGGGTACCTTTTTTGAGCCAATACTGCACAAGAAAAATTAGTGA
TCTCCGCGAAGGCGTGTCCGCCCCGAGCGAAGCCAAGATGCACTAATAAA
CGTGGAACGTTCCACTTTTACCGAACCCACACTGCCGTGTCCCCTTGGGT
CAACCGGCGATGAACAGATACGCAATCGGGTCAGGGAAACACGTGTTGTG
GCGGCGCATGGTGCGAGAGGTGCCCGAGCTCATGGAACGAACTCCGCAGG
AGGCGCGAGAGAGATGGCTGAGACTCACGGGGAGGCTCAGCGCGGGCGGT
GGAGAGGGAGGGAGCGGGAGAGAGGGGGGGGAGCGTATGGCAGGCTCGCC
GGCATTAGACAACTTTTACATTCAGGTAGGTCTCAATGGGTCACAAGCTG
TGGTTCGCTCCGTGGTATTGATTACCGGCCAAGGCATCACTTTCTATATT
CCAGCTCTCCCGTTGGTAATAGTCAAGTCCAGTTGTCCCGTTGTGCCGCA
AAGTTGTACGCGAAGGTTCCAACTCTTCGACCCTCCCCGTCCTCCCGCTC
TCAAAACGCCTGTTGGCCGACACAACCCAGCCTCCCGTGCTGGAGCAATG
GGAGGAAATCGTCGAGGGTGAGGGAATGGGTTCTTTCCGCGGAAACGTGT
TTGGGCAGCGAGGCTTGGCCGACGGGACGACGATGACCACAGCGCCGATC
GACATTTCGGGCAGGAAAATACAAGACCAGGTAAAATCCAAAGCTTGCGG
CGTTAGGGGGCACTTTTTTGTACCATCCCGATAGAGAGGAATTCTTACAG
CGTGTAGTTTTCGATGTATGGTCATACTAAAAGATCGGGACCTTTCTAAA
CCTTGTAAGACGGGATGTTGAATGTCAGGACGATAGCCTCACTGCCCTTT
TCTGTCGTCGTGAAAGTTCAGGCATCTAGGCAACAGTTTGGTTTGCCGCT
GCCTTTTGTTTTACGGAAGTCTGCGGTGCCTTATCCGCGAGATAAGTCAA
CCACATGTTTCGTTTTGTGTCACAAGTGTCCAGTACGACTTTTGTGCAGA
CTGAGCAAGATGACGCAGCAACGATGCACGTGGGTTTTGCATTCCCATAC
ACAATGACCTACTGACTGTCTTCCGGCTTGAGTTCTTATCCTTTCCTCCC
CCCGTGCTGTGTTGCTCTTCGCAGTACGTTGCCACGCAGTGCGGCGTGGT
ATACGAGCTGGGAGAGAGACGAGAGACAGACTTGGTCAGCCAGGTAGGCC
GAGATATGACTTTCTTCTTTGCGCAGACACTGTGTCTTGTTCGTGATTAT
TTTCCAGTCTCTGTCACGCTGGTAAATGTTCCACTATTTCGGTTTCGTGC
GCTTGCGGCCTCTTGTTATACGGGACTGTTGCCTTTGCCACCAGGACAAA
CACCGAGACAACAGTCAGTACAGTATTAGATAAGAGCGTGTGACTTATTT
GTTGTCAGGGATGTCGAGGGGGTGCTAGGTTTCCCGCGTTGGTGACGGTA
GTCTTGATGTGCGTGCAGCAATCCACATGCAGCACATCATCGACAGTTTT
back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1226:5941..8940- >mRNA_E-siliculosus-1a_F_contig1226.1424.1 ID=mRNA_E-siliculosus-1a_F_contig1226.1424.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1424.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2460bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1226:5941..8940- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTAACGTTCAAACACCGAAGTAACGCTGTTGCGGCGGCGCTCCTGCT
TGCCCACCATCGACACGGAAACATGCCGCCTCTTGCGGCAGGCTTCGTTG
CACCCACCCCGATCGCCGCTCAGCCGCAGCGGCGGCTTCCACCCTGGTGT
GAACCCGTATCGTTTCCGCCTGCTTGGGACTCGTCAAGGCCAGTGCCGGC
AAGTAGCAAACCGCCGGCTTCCAACTGCAACTACCGCTCCTGCGCCGCGC
GAGGTGTTCGACCAACGAGCGCAACGACTTCCCACGCGGGTGCTTCTCCT
TCCGGCAGCAGCACGCCGAAGACCGGTGCCGACGGTTCGGGTGCAGGGTC
CGCTACTTCTTCATCACCTAGTGCGGTTGTCACGCAGGCAGTAGAAGGGA
GCAAGCACCCAGCAGGCGGGTTCGCAAATGGGGCTTTGATCCCATTGGCA
GCGGAGGGAGGCAACAGCAGCGGGGCAGAAGGAGCAACGGCGGTACGAGT
AGATAAGTGGGGGGAGGCGGCGGAAGGGAACTTGGCGGGAGAGTTTGAGT
GGGAGGGCGGGGCAGAGGCTACATGGACCGAGTTCGAGGACTGGCTCCTT
CAGGACACGTACTCCAGATGGTAACGTTCAAACACCGAAGTAACGCTGTT
GCGGCGGCGCTCCTGCTTGCCCACCATCGACACGGAAACATGCCGCCTCT
TGCGGCAGGCTTCGTTGCACCCACCCCGATCGCCGCTCAGCCGCAGCGGC
GGCTTCCACCCTGGTGTGAACCCGTATCGTTTCCGCCTGCTTGGGACTCG
TCAAGGCCAGTGCCGGCAAGTAGCAAACCGCCGGCTTCCAACTGCAACTA
CCGCTCCTGCGCCGCGCGAGGTGTTCGACCAACGAGCGCAACGACTTCCC
ACGCGGGTGCTTCTCCTTCCGGCAGCAGCACGCCGAAGACCGGTGCCGAC
GGTTCGGGTGCAGGGTCCGCTACTTCTTCATCACCTAGTGCGGTTGTCAC
GCAGGCAGTAGAAGGGAGCAAGCACCCAGCAGGCGGGTTCGCAAATGGGG
CTTTGATCCCATTGGCAGCGGAGGGAGGCAACAGCAGCGGGGCAGAAGGA
GCAACGGCGGTACGAGTAGATAAGTGGGGGGAGGCGGCGGAAGGGAACTT
GGCGGGAGAGTTTGAGTGGGAGGGCGGGGCAGAGGCTACATGGACCGAGT
TCGAGGACTGGCTCCTTCAGGACACGTACTCCAGATACGCAATCGGGTCA
GGGAAACACGTGTTGTGGCGGCGCATGGTGCGAGAGGTGCCCGAGCTCAT
GGAACGAACTCCGCAGGAGGCGCGAGAGAGATGGCTGAGACTCACGGGGA
GGCTCAGCGCGGGCGGTGGAGAGGGAGGGAGCGGGAGAGAGGGGGGGGAG
CGTATGGCAGGCTCGCCGGCATTAGACAACTTTTACATTCAGATACGCAA
TCGGGTCAGGGAAACACGTGTTGTGGCGGCGCATGGTGCGAGAGGTGCCC
GAGCTCATGGAACGAACTCCGCAGGAGGCGCGAGAGAGATGGCTGAGACT
CACGGGGAGGCTCAGCGCGGGCGGTGGAGAGGGAGGGAGCGGGAGAGAGG
GGGGGGAGCGTATGGCAGGCTCGCCGGCATTAGACAACTTTTACATTCAG
CCTCCCGTGCTGGAGCAATGGGAGGAAATCGTCGAGGGTGAGGGAATGGG
TTCTTTCCGCGGAAACGTGTTTGGGCAGCGAGGCTTGGCCGACGGGACGA
CGATGACCACAGCGCCGATCGACATTTCGGGCAGGAAAATACAAGACCAG
CCTCCCGTGCTGGAGCAATGGGAGGAAATCGTCGAGGGTGAGGGAATGGG
TTCTTTCCGCGGAAACGTGTTTGGGCAGCGAGGCTTGGCCGACGGGACGA
CGATGACCACAGCGCCGATCGACATTTCGGGCAGGAAAATACAAGACCAG
TACGTTGCCACGCAGTGCGGCGTGGTATACGAGCTGGGAGAGAGACGAGA
GACAGACTTGGTCAGCCAGGTAGGCCGAGATATGACTTTCTTCTTTGCGC
AGACACTGTGTCTTGTTCGTGATTATTTTCCAGTCTCTGTCACGCTGGTA
AATGTTCCACTATTTCGGTTTCGTGCGCTTGCGGCCTCTTGTTATACGGG
ACTGTTGCCTTTGCCACCAGGACAAACACCGAGACAACAGTCAGTACAGT
ATTAGTACGTTGCCACGCAGTGCGGCGTGGTATACGAGCTGGGAGAGAGA
CGAGAGACAGACTTGGTCAGCCAGGTAGGCCGAGATATGACTTTCTTCTT
TGCGCAGACACTGTGTCTTGTTCGTGATTATTTTCCAGTCTCTGTCACGC
TGGTAAATGTTCCACTATTTCGGTTTCGTGCGCTTGCGGCCTCTTGTTAT
ACGGGACTGTTGCCTTTGCCACCAGGACAAACACCGAGACAACAGTCAGT
ACAGTATTAG back to top
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