mRNA_E-siliculosus-1a_F_contig12256.1423.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12256.1423.1
Unique NamemRNA_E-siliculosus-1a_F_contig12256.1423.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12256.1423.1 vs. uniprot
Match: D8LEP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP5_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 2.940e-38
Identity = 72/102 (70.59%), Postives = 86/102 (84.31%), Query Frame = 1 
Query:    7 VDVDKLSATCQRLLREARAKVLKDSKEAPKKTGEGTIDPEEPSELAAKSSLEYHTALAVRYGDYAKEQGMSKGKVAKEHTLWAGSTRNGSTEDLFVARGGRG 312
            V +DKL  TCQRL+R+A+ K+ K+ ++APKKTGEGT+DPEEPSE A KSSLE+HTALAV+Y  YAKEQ MSKGKVAKEH  WAGSTRN +T+D+F  RGGRG
Sbjct:  156 VAMDKLVDTCQRLVRDAKKKIEKEQRDAPKKTGEGTVDPEEPSEEAMKSSLEHHTALAVQYDLYAKEQSMSKGKVAKEHAEWAGSTRNSNTDDIFSLRGGRG 257
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BLAST of mRNA_E-siliculosus-1a_F_contig12256.1423.1 vs. uniprot
Match: A0A6H5JTZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ7_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.130e-36
Identity = 73/102 (71.57%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:    7 VDVDKLSATCQRLLREARAKVLKDSKEAPKKTGEGTIDPEEPSELAAKSSLEYHTALAVRYGDYAKEQGMSKGKVAKEHTLWAGSTRNGSTEDLFVARGGRG 312
            V +DKL  TCQRLLREA+ K+ K+ K+A KKTGEGT DP+EPSE A KSSLE+HTALAV+Y  YAKEQGMSKGKV KEH  WAGS  N +TEDLF  RGGRG
Sbjct:   67 VAIDKLVDTCQRLLREAKKKIEKEQKDALKKTGEGTEDPKEPSEEAEKSSLEHHTALAVQYDLYAKEQGMSKGKVGKEHAEWAGSMSNSNTEDLFSLRGGRG 168
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12256.1423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEP5_ECTSI2.940e-3870.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTZ7_9PHAE1.130e-3671.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12256contigE-siliculosus-1a_F_contig12256:560..1492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size318
Model size321
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927744.5319545-CDS-E-siliculosus-1a_F_contig12256:561..7201622927744.5319545-CDS-E-siliculosus-1a_F_contig12256:561..720Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12256 562..720 -
1696318664.1347044-CDS-E-siliculosus-1a_F_contig12256:561..7201696318664.1347044-CDS-E-siliculosus-1a_F_contig12256:561..720Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12256 562..720 -
1622927744.9099236-CDS-E-siliculosus-1a_F_contig12256:1333..14921622927744.9099236-CDS-E-siliculosus-1a_F_contig12256:1333..1492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12256 1334..1492 -
1696318664.1430495-CDS-E-siliculosus-1a_F_contig12256:1333..14921696318664.1430495-CDS-E-siliculosus-1a_F_contig12256:1333..1492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12256 1334..1492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12256.1423.1prot_E-siliculosus-1a_F_contig12256.1423.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12256 562..1492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12256.1423.1

>prot_E-siliculosus-1a_F_contig12256.1423.1 ID=prot_E-siliculosus-1a_F_contig12256.1423.1|Name=mRNA_E-siliculosus-1a_F_contig12256.1423.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=106bp
GAVDVDKLSATCQRLLREARAKVLKDSKEAPKKTGEGTIDPEEPSELAAK
SSLEYHTALAVRYGDYAKEQGMSKGKVAKEHTLWAGSTRNGSTEDLFVAR
GGRGAG
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mRNA from alignment at E-siliculosus-1a_F_contig12256:560..1492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12256.1423.1 ID=mRNA_E-siliculosus-1a_F_contig12256.1423.1|Name=mRNA_E-siliculosus-1a_F_contig12256.1423.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=933bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12256:560..1492- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTGCCGTTGATGTGGATAAGCTCTCCGCAACCTGCCAGCGCCTACTCCG
CGAGGCGAGGGCAAAGGTCTTGAAGGATTCCAAAGAAGCACCCAAGAAAA
CGGGTGAAGGTACAATTGACCCCGAGGAGCCGAGTGAGCTGGCGGCGAAG
AGCTCGTTGGTGAGTTTGCGTGTAGGGTTGGGGTTCGAACTGTGTGCCTG
TCTTTACGGGATATTCTTGTTTTTTGAGGATGTGTGTCTCTCCTCCCTCA
TTGGATCTCGACCCTGCCACCTTGACGTAGCCCTCGAATTTCGTTCCAAC
TTCGTTTGCATTCTTTTTCATGTTTGTTGTGAGTAGCATGTGTTGTTCTC
CCTCGCATACGGTACAGGGTGGGTGTGATGTCGTTTTTTTGTCGTTGTCT
CAATATGGTCGTTCTATAGTTGTGGCCTGTAATGTCTTTGTTGTGGTTCA
AATTAAATTCCCATGTCCGGGTGATGATCTTACGCCTTCGTGCCTGCTTG
TCTGGTTGTTTGCGTTTTATTGGACTGATGTTGGCGTTTTATTTTGAAGG
TTTGGCGGTAGTGCCCTAGGGCTAGACTGTTCGGGACGAGTGAAGACGCG
GAGGGCAAGGGCGGCTAACACGGGATTAACATAGATGTTCCGGTCACGGC
AAAGCTCAAATTAAAAAGAAAAAGAATCGTACGTTGTTCGACCGCGTGAA
AACCGCCAACCGTCACGAGTGACAGCGAAATAATCTTGCTCGTGCGCTCA
ACTTCCCTTGCAAATCCACCAGGAATACCACACCGCGCTCGCCGTGCGGT
ACGGGGACTACGCCAAAGAGCAAGGCATGTCAAAGGGCAAGGTGGCCAAA
GAGCACACTTTGTGGGCCGGGTCGACGCGCAACGGCAGCACAGAGGATCT
TTTCGTAGCGCGTGGTGGGCGTGGGGCCGGTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12256:560..1492-

>mRNA_E-siliculosus-1a_F_contig12256.1423.1 ID=mRNA_E-siliculosus-1a_F_contig12256.1423.1|Name=mRNA_E-siliculosus-1a_F_contig12256.1423.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12256:560..1492- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTGCCGTTGATGTGGATAAGCTCTCCGCAACCTGCCAGCGCCTACTCCG
CGAGGCGAGGGCAAAGGTCTTGAAGGATTCCAAAGAAGCACCCAAGAAAA
CGGGTGAAGGTACAATTGACCCCGAGGAGCCGAGTGAGCTGGCGGCGAAG
AGCTCGTTGGGTGCCGTTGATGTGGATAAGCTCTCCGCAACCTGCCAGCG
CCTACTCCGCGAGGCGAGGGCAAAGGTCTTGAAGGATTCCAAAGAAGCAC
CCAAGAAAACGGGTGAAGGTACAATTGACCCCGAGGAGCCGAGTGAGCTG
GCGGCGAAGAGCTCGTTGGAATACCACACCGCGCTCGCCGTGCGGTACGG
GGACTACGCCAAAGAGCAAGGCATGTCAAAGGGCAAGGTGGCCAAAGAGC
ACACTTTGTGGGCCGGGTCGACGCGCAACGGCAGCACAGAGGATCTTTTC
GTAGCGCGTGGTGGGCGTGGGGCCGGTGAATACCACACCGCGCTCGCCGT
GCGGTACGGGGACTACGCCAAAGAGCAAGGCATGTCAAAGGGCAAGGTGG
CCAAAGAGCACACTTTGTGGGCCGGGTCGACGCGCAACGGCAGCACAGAG
GATCTTTTCGTAGCGCGTGGTGGGCGTGGGGCCGGT
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