Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match:
E6ZER1_ECTSI (Ribosomal protein S7 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER1_ECTSI)
HSP 1 Score: 291 bits (744), Expect = 7.270e-99
Identity = 152/165 (92.12%), Postives = 156/165 (94.55%), Query Frame = 1
Query: 1 MLAKEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAI 495
MLAKEDKNNFV N+IKSDPL+TKM NLLMRHGKRSKAEKILFKALQ LDK+YPGQATHIFYL IIA KQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGL+LGMRSILK SRERSQLSL PLWESLSQELLQASQSKGKVV KRYKVNKLAISNKRKVHFAI
Sbjct: 1 MLAKEDKNNFVHLNRIKSDPLITKMINLLMRHGKRSKAEKILFKALQVLDKVYPGQATHIFYLGIIAVKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLNLGMRSILKTSRERSQLSLSPLWESLSQELLQASQSKGKVVAKRYKVNKLAISNKRKVHFAI 165
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match:
A0A0U1XGE3_9PHAE (Ribosomal protein S7 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XGE3_9PHAE)
HSP 1 Score: 233 bits (595), Expect = 3.640e-76
Identity = 124/167 (74.25%), Postives = 142/167 (85.03%), Query Frame = 1
Query: 1 MLAKEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAIYR 501
ML KE++NN V IKSDPLV KM NLLM+ GKRSKAEK+LFK Q LDK YPGQ+ IFYL +IA KQDIAVR+KPKPKKRRNKQSF+VYLPR+ISPT GL LG+RSILK S+ERSQ S LPLWESLSQELLQASQ+KG+VV K+Y V+KLA+SNKR+VHF+I R
Sbjct: 1 MLVKENQNNNVDNLIIKSDPLVKKMINLLMKDGKRSKAEKVLFKCFQLLDKNYPGQSMRIFYLGVIAVKQDIAVRLKPKPKKRRNKQSFDVYLPRIISPTRGLGLGIRSILKTSKERSQQSFLPLWESLSQELLQASQNKGEVVLKKYSVSKLALSNKRRVHFSIRR 167
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match:
A0A089N0X3_PETFA (Ribosomal protein S7 n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089N0X3_PETFA)
HSP 1 Score: 231 bits (590), Expect = 2.030e-75
Identity = 124/167 (74.25%), Postives = 143/167 (85.63%), Query Frame = 1
Query: 1 MLAKEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAIYR 501
ML KE KNN V +KIKSDPLV KM NLLM+ GKRSKAEK+LF + QALDK +PGQ+ HIFYLAIIA KQDIAVR+KPKPKKR+N QSF++YLPRVISP GLSLG+RSILK S++RSQ S +PLWESLSQELLQASQ+KG VV +RY V+KLA SNKR+VHFA+ R
Sbjct: 1 MLIKEKKNN-VYGSKIKSDPLVKKMINLLMKDGKRSKAEKVLFNSFQALDKEFPGQSIHIFYLAIIAVKQDIAVRVKPKPKKRKNNQSFDIYLPRVISPIRGLSLGIRSILKSSKDRSQQSFIPLWESLSQELLQASQNKGVVVTRRYSVSKLAASNKRRVHFAVRR 166
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match:
Q94Z12_PYLLI (Ribosomal protein S7 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z12_PYLLI)
HSP 1 Score: 228 bits (580), Expect = 6.550e-74
Identity = 114/158 (72.15%), Postives = 136/158 (86.08%), Query Frame = 1
Query: 22 NNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAI 495
NN++ ++KSDPL TKM NLLMRHGKRSKAEK+L +ALQ LDK YPGQA HIFY +I KQD+AVR+KPKP+K RNKQS+N+YLPRVISP CGL LG+RSI+K S++RSQ S LPLWESLSQELLQASQ+KG VVEK+YKV+ LA++NKR+VHF I
Sbjct: 6 NNYLYSLRVKSDPLATKMINLLMRHGKRSKAEKVLSRALQNLDKNYPGQALHIFYSGVINVKQDVAVRLKPKPRKSRNKQSYNIYLPRVISPVCGLGLGIRSIIKASKDRSQSSFLPLWESLSQELLQASQNKGGVVEKKYKVHGLALANKRRVHFDI 163
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match:
A0A0U1V7B7_SCYLO (Ribosomal protein S7 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1V7B7_SCYLO)
HSP 1 Score: 221 bits (563), Expect = 2.620e-71
Identity = 120/167 (71.86%), Postives = 137/167 (82.04%), Query Frame = 1
Query: 1 MLAKEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAIYR 501
ML K+ NN +IK+DPLV KM NLLM+ GKRSKAEK+LFK+ QALDK YPGQ+ +IFYLAIIA KQDIA+R+KPKPKKRR QSFNVYLPRVISP GLSLG+RSILK S+ERSQ S +PLWESLSQEL +ASQ KG VV KRY V+KLA SN+R+VHF I R
Sbjct: 1 MLVKDKVNNNYGL-RIKTDPLVKKMINLLMKDGKRSKAEKVLFKSFQALDKDYPGQSINIFYLAIIAVKQDIAIRVKPKPKKRRTTQSFNVYLPRVISPLRGLSLGIRSILKSSKERSQESFIPLWESLSQELFKASQDKGDVVAKRYSVSKLAASNRRRVHFNIRR 166
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match:
A0A8E8U536_ALAES (Ribosomal protein S7 n=8 Tax=Alariaceae TaxID=2887 RepID=A0A8E8U536_ALAES)
HSP 1 Score: 221 bits (562), Expect = 3.600e-71
Identity = 114/161 (70.81%), Postives = 134/161 (83.23%), Query Frame = 1
Query: 13 EDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAI 495
+ K + F IKSDPLV KM NLLMR GKRSKAE +L KALQALDK YPG+A HIFYL I+A +QDI VR+KPKPK RRNKQSFNVYLPRVISP CGL+LGMRS+LK SR+RS S PLWE+LS+ELL+ASQ+KG+VV KRY +NKLA+SNKR++HF +
Sbjct: 5 DKKKKSIKFLGIKSDPLVKKMINLLMRDGKRSKAENVLNKALQALDKDYPGRAIHIFYLGILAVRQDIGVRLKPKPKTRRNKQSFNVYLPRVISPICGLNLGMRSLLKASRDRSMAS--PLWENLSKELLKASQNKGEVVSKRYSLNKLAVSNKRRIHFGV 163
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match:
A0A3G5FPM3_9PHAE (Ribosomal protein S7 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPM3_9PHAE)
HSP 1 Score: 219 bits (559), Expect = 1.100e-70
Identity = 114/153 (74.51%), Postives = 130/153 (84.97%), Query Frame = 1
Query: 43 KIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAIYR 501
K KSDPLV K NLLM HGKRSKAEKILF+ QALDK YPGQ+ IFY A++A+KQDIAVR+KP PKKRR KQS+NVYLPR+I+P CGLSLG+RS++K SRERSQ S PLWESLSQEL QASQ+KG VV +RY+VNKLAISNKR+VHFA R
Sbjct: 15 KFKSDPLVIKAINLLMCHGKRSKAEKILFQTFQALDKDYPGQSFRIFYSAVMASKQDIAVRLKPNPKKRRRKQSYNVYLPRLITPMCGLSLGIRSLIKASRERSQSSFSPLWESLSQELFQASQNKGGVVAERYRVNKLAISNKRRVHFATRR 167
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match:
A0A2H4ZR10_9PHAE (Ribosomal protein S7 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZR10_9PHAE)
HSP 1 Score: 219 bits (558), Expect = 1.370e-70
Identity = 114/161 (70.81%), Postives = 137/161 (85.09%), Query Frame = 1
Query: 19 KNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAIYR 501
K N V +KIKSDPLV KM NLLM+ GK+SKAEK+LF +LQALDK YPGQ+ +IFY A+IA +QDIAVR+KPKPKKR++ SF++YLPRVISP GLSLG+RSILK S++RSQ S +PLWESLS+ELLQASQ+KG VV +RY V+KLA SNKR+VHFAI R
Sbjct: 3 KKNHVYSSKIKSDPLVKKMINLLMKDGKKSKAEKVLFNSLQALDKSYPGQSIYIFYSAVIAVRQDIAVRVKPKPKKRKSNNSFDIYLPRVISPIRGLSLGIRSILKSSKDRSQQSFIPLWESLSEELLQASQNKGAVVARRYSVSKLASSNKRRVHFAIRR 163
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match:
A0A1I9LW96_9PHAE (Ribosomal protein S7 (Fragment) n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW96_9PHAE)
HSP 1 Score: 219 bits (558), Expect = 1.560e-70
Identity = 115/164 (70.12%), Postives = 137/164 (83.54%), Query Frame = 1
Query: 10 KEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKK--RRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAI 495
K+DKNN ++ +KIKSDPLVTKM +LLMRHGKRSKAEK+L K LDK YPGQ+ IFY AII A+QDIAVR+KPK KK RRNK S++VY+PRVI P CG++LG+RSILK SRERS+ S LPLWESLSQEL +ASQ+KGKV+E R+KVN LA+SNK KV F+I
Sbjct: 2 KKDKNNLINSDKIKSDPLVTKMISLLMRHGKRSKAEKVLSKTFLFLDKDYPGQSIDIFYTAIINARQDIAVRLKPKSKKKTRRNKHSYDVYIPRVILPICGINLGIRSILKASRERSKFSFLPLWESLSQELFEASQNKGKVIENRFKVNSLAVSNKGKVRFSI 165
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Match:
A0A8F0JZY2_AKKLU (Ribosomal protein S7 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0JZY2_AKKLU)
HSP 1 Score: 218 bits (556), Expect = 6.710e-70
Identity = 112/161 (69.57%), Postives = 136/161 (84.47%), Query Frame = 1
Query: 13 EDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALDKIYPGQATHIFYLAIIAAKQDIAVRIKPKPKKRRNKQSFNVYLPRVISPTCGLSLGMRSILKISRERSQLSLLPLWESLSQELLQASQSKGKVVEKRYKVNKLAISNKRKVHFAI 495
E++ N ++F IKSDPLV KM NLLMR+GKRSKAE +L +A QALDK YPG+A HIFYL I+A +QDI VR+KPKPK RRN+QSFNVY+PRVISP CGL+LGMRS+LK SR+RS S P WE+LS+ELLQASQ++G+VV KRY +NKLAISNKR+VHF +
Sbjct: 30 ENQKNTLNFLGIKSDPLVKKMINLLMRNGKRSKAENVLNQAFQALDKDYPGRAIHIFYLGILAVRQDIGVRLKPKPKNRRNRQSFNVYIPRVISPICGLNLGMRSLLKASRDRSSSS--PFWENLSKELLQASQNRGEVVSKRYSLNKLAISNKRRVHFGV 188
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10134.142.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 7.27e-99 / Id = 92.12 Expect = 3.64e-76 / Id = 74.25 Expect = 2.03e-75 / Id = 74.25 Expect = 6.55e-74 / Id = 72.15 Expect = 2.62e-71 / Id = 71.86 Expect = 3.60e-71 / Id = 70.81 Expect = 1.10e-70 / Id = 74.51 Expect = 1.37e-70 / Id = 70.81 Expect = 1.56e-70 / Id = 70.12 Expect = 6.71e-70 / Id = 69.57 Sequence E6ZER1_ECTSI A0A0U1XGE3_9PHAE A0A089N0X3_PETFA Q94Z12_PYLLI A0A0U1V7B7_SCYLO A0A8E8U536_ALAES A0A3G5FPM3_9PHAE A0A2H4ZR10_9PHAE A0A1I9LW96_9PHAE A0A8F0JZY2_AKKLU Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 504 Model size 504 Exons 1 Hectar predicted targeting category other localisation EggNOG free text desc. One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA BRITE br01610,ko00000,ko00001,ko00002,ko03011 Best eggNOG OG NA|NA|NA Best tax level Nitrosomonadales COG Functional cat. J EggNOG OGs 1MXC8@1224,2VQ63@28216,44V09@713636,COG0049@1,COG0049@2 GOs GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015935,GO:0016020,GO:0016043,GO:0017148,GO:0019222,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112,GO:2000113 KEGG Module M00178,M00179 KEGG Pathway ko03010,map03010 KEGG ko ko:K02992 Preferred name rpsG Seed eggNOG ortholog 395494.Galf_0554 Seed ortholog evalue 5.6e-09 Seed ortholog score 67.8 Taxonomic scope Bacteria
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927515.894436-CDS-E-siliculosus-1a_F_contig10134:455..959 1622927515.894436-CDS-E-siliculosus-1a_F_contig10134:455..959 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig10134 456..959 - 1696318563.2824342-CDS-E-siliculosus-1a_F_contig10134:455..959 1696318563.2824342-CDS-E-siliculosus-1a_F_contig10134:455..959 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig10134 456..959 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10134.142.1
>prot_E-siliculosus-1a_F_contig10134.142.1 ID=prot_E-siliculosus-1a_F_contig10134.142.1|Name=mRNA_E-siliculosus-1a_F_contig10134.142.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=168bp
MLAKEDKNNFVSFNKIKSDPLVTKMTNLLMRHGKRSKAEKILFKALQALD back to top mRNA from alignment at E-siliculosus-1a_F_contig10134:456..959-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10134.142.1 ID=mRNA_E-siliculosus-1a_F_contig10134.142.1|Name=mRNA_E-siliculosus-1a_F_contig10134.142.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=504bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:456..959- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)ATGTTAGCTAAAGAAGATAAAAATAATTTCGTTTCTTTTAATAAAATTAA
AAGTGATCCTCTTGTAACAAAAATGACTAATCTTTTAATGCGACATGGTA
AAAGATCCAAGGCTGAAAAAATTTTATTTAAGGCTCTTCAGGCTTTGGAT
AAGATATATCCTGGCCAAGCAACCCATATATTTTATTTAGCTATTATTGC
GGCTAAGCAAGATATTGCGGTACGTATAAAACCAAAACCTAAAAAGCGAC
GTAATAAGCAATCTTTTAATGTTTACTTACCGAGAGTTATTTCGCCTACT
TGTGGCTTAAGTTTAGGAATGAGATCTATTTTAAAAATAAGTCGAGAGCG
GTCTCAGCTTTCTCTTTTACCACTTTGGGAAAGTTTAAGTCAAGAGCTAC
TTCAAGCATCCCAGAGTAAAGGAAAGGTTGTAGAAAAAAGATATAAAGTT
AATAAGTTAGCAATATCTAATAAAAGAAAGGTTCATTTTGCTATCTATCG
TTAA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10134:456..959-
>mRNA_E-siliculosus-1a_F_contig10134.142.1 ID=mRNA_E-siliculosus-1a_F_contig10134.142.1|Name=mRNA_E-siliculosus-1a_F_contig10134.142.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1008bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:456..959- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top