mRNA_E-siliculosus-1a_F_contig12243.1415.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12243.1415.1
Unique NamemRNA_E-siliculosus-1a_F_contig12243.1415.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: PSBE_PHATC (Cytochrome b559 subunit alpha n=39 Tax=cellular organisms TaxID=131567 RepID=PSBE_PHATC)

HSP 1 Score: 172 bits (437), Expect = 1.060e-54
Identity = 79/84 (94.05%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITSVRYWIIHSITIPSLF+SGWLF+STGLAYDVFGTPRPNEYFTQDRQQ+PLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84
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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: PSBE_THAPS (Cytochrome b559 subunit alpha n=117 Tax=Eukaryota TaxID=2759 RepID=PSBE_THAPS)

HSP 1 Score: 172 bits (436), Expect = 1.500e-54
Identity = 80/84 (95.24%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITSVRYWIIH+ITIPSLF+SGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHTITIPSLFVSGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGL 84
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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: A0A3G1I9C5_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Batrachospermaceae TaxID=31371 RepID=A0A3G1I9C5_9FLOR)

HSP 1 Score: 169 bits (429), Expect = 4.740e-53
Identity = 77/84 (91.67%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITS+RYW+IHSITIPSLFI+GWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELE+LT+G+
Sbjct:   33 MSGGSTGERPFSDIITSIRYWVIHSITIPSLFIAGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEELTKGI 116
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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: PSBE_GUITH (Cytochrome b559 subunit alpha n=32 Tax=Eukaryota TaxID=2759 RepID=PSBE_GUITH)

HSP 1 Score: 168 bits (426), Expect = 5.050e-53
Identity = 75/84 (89.29%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITS+RYWIIHSITIP+LF++GWLF+STGLAYD+FGTPRPNEYFTQ+RQQVPLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPALFVAGWLFVSTGLAYDIFGTPRPNEYFTQERQQVPLVNDRFSAKQELEDLTKGL 84
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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: A0A6M3WCX6_COROI (Cytochrome b559 subunit alpha n=87 Tax=Florideophyceae TaxID=2806 RepID=A0A6M3WCX6_COROI)

HSP 1 Score: 169 bits (428), Expect = 5.070e-53
Identity = 75/84 (89.29%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITS+RYW+IHSITIP+LF++GWLF+STGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELEDLT+G+
Sbjct:   24 MSGGSTGERPFSDIITSIRYWVIHSITIPALFVAGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGI 107
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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: A0A6B9TNT0_SARFS (Cytochrome b559 subunit alpha n=16 Tax=Fucales TaxID=3009 RepID=A0A6B9TNT0_SARFS)

HSP 1 Score: 167 bits (423), Expect = 1.450e-52
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLF+STGLAYDVFGTPRPNEYFTQDRQQVPLVNDRF+  +E+ED TRGL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFNVTQEIEDFTRGL 84
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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: PSBE_EMIHU (Cytochrome b559 subunit alpha n=17 Tax=cellular organisms TaxID=131567 RepID=PSBE_EMIHU)

HSP 1 Score: 166 bits (419), Expect = 5.910e-52
Identity = 75/84 (89.29%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITS+RYWIIHSITIPSLF++G+LF+STGLAYD FGTPRPNEYFTQDRQQ+PLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPSLFVAGFLFVSTGLAYDAFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84
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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: A0A1C9CFD7_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandiaceae TaxID=31478 RepID=A0A1C9CFD7_9FLOR)

HSP 1 Score: 165 bits (417), Expect = 1.270e-51
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITSVRYW+IHSITIPSLFI+GWLF+STGLAYDVFGTPRP+EYFTQDRQQVPL+NDRFS K+ELEDLT+ +
Sbjct:    1 MSGGSTGERPFSDIITSVRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPDEYFTQDRQQVPLINDRFSVKQELEDLTKSI 84
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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: A0A0D3M5E1_9STRA (Cytochrome b559 subunit alpha n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0D3M5E1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.330e-51
Identity = 74/81 (91.36%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:   10 GSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            GSTGERPFSDIITS+RYWIIHSITIPSLF+SGWLF+STGLAYDVFGTPRPNEYF+QDRQQVPLVNDRF+AK+ELEDLT+GL
Sbjct:    3 GSTGERPFSDIITSIRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFSQDRQQVPLVNDRFNAKQELEDLTKGL 83
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: M1JFG4_DIALT (Cytochrome b559 subunit alpha n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1JFG4_DIALT)

HSP 1 Score: 163 bits (412), Expect = 6.920e-51
Identity = 73/84 (86.90%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPF DIITS+RYWIIHSITIPSLF++GWLF++TGLAYD+FGTPRPNEYFT DRQQVPLVNDRFSAK+ELEDLT+ L
Sbjct:    1 MSGGSTGERPFVDIITSIRYWIIHSITIPSLFVAGWLFVATGLAYDIFGTPRPNEYFTADRQQVPLVNDRFSAKQELEDLTKSL 84
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBE_PHATC1.060e-5494.05Cytochrome b559 subunit alpha n=39 Tax=cellular or... [more]
PSBE_THAPS1.500e-5495.24Cytochrome b559 subunit alpha n=117 Tax=Eukaryota ... [more]
A0A3G1I9C5_9FLOR4.740e-5391.67Cytochrome b559 subunit alpha n=3 Tax=Batrachosper... [more]
PSBE_GUITH5.050e-5389.29Cytochrome b559 subunit alpha n=32 Tax=Eukaryota T... [more]
A0A6M3WCX6_COROI5.070e-5389.29Cytochrome b559 subunit alpha n=87 Tax=Florideophy... [more]
A0A6B9TNT0_SARFS1.450e-5291.67Cytochrome b559 subunit alpha n=16 Tax=Fucales Tax... [more]
PSBE_EMIHU5.910e-5289.29Cytochrome b559 subunit alpha n=17 Tax=cellular or... [more]
A0A1C9CFD7_9FLOR1.270e-5188.10Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandi... [more]
A0A0D3M5E1_9STRA3.330e-5191.36Cytochrome b559 subunit alpha n=6 Tax=Eukaryota Ta... [more]
M1JFG4_DIALT6.920e-5186.90Cytochrome b559 subunit alpha n=2 Tax=Pavlovaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12243contigE-siliculosus-1a_F_contig12243:196..450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size255
Model size255
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko00194
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGs2CHYC@1,2S3QA@2759
EggNOG free text desc.photosynthetic electron transport chain
KEGG ModuleM00161
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG koko:K02707,ko:K02713
Preferred namepsbE
Seed eggNOG ortholog2880.D1J7D5
Seed ortholog evalue5.6e-42
Seed ortholog score176.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927743.6249359-CDS-E-siliculosus-1a_F_contig12243:195..4501622927743.6249359-CDS-E-siliculosus-1a_F_contig12243:195..450Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12243 196..450 -
1696318663.646933-CDS-E-siliculosus-1a_F_contig12243:195..4501696318663.646933-CDS-E-siliculosus-1a_F_contig12243:195..450Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12243 196..450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12243.1415.1prot_E-siliculosus-1a_F_contig12243.1415.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12243 196..450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12243.1415.1

>prot_E-siliculosus-1a_F_contig12243.1415.1 ID=prot_E-siliculosus-1a_F_contig12243.1415.1|Name=mRNA_E-siliculosus-1a_F_contig12243.1415.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=85bp
MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGT
PRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL*
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mRNA from alignment at E-siliculosus-1a_F_contig12243:196..450-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12243.1415.1 ID=mRNA_E-siliculosus-1a_F_contig12243.1415.1|Name=mRNA_E-siliculosus-1a_F_contig12243.1415.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=255bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12243:196..450- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTGGCGGTTCAACCGGAGAGCGTCCTTTTTCTGATATTATAACAAG
TGTACGTTATTGGATTATTCATAGTATTACAATTCCTTCTTTATTTATTT
CGGGTTGGCTATTTATAAGCACTGGTTTAGCTTATGATGTTTTTGGGACT
CCTAGACCCAATGAATATTTTACACAAGATAGACAGCAAGTTCCATTAGT
AAACGATAGATTTAGTGCTAAAGAAGAATTAGAAGATTTAACACGAGGTT
TATAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12243:196..450-

>mRNA_E-siliculosus-1a_F_contig12243.1415.1 ID=mRNA_E-siliculosus-1a_F_contig12243.1415.1|Name=mRNA_E-siliculosus-1a_F_contig12243.1415.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=510bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12243:196..450- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTGGCGGTTCAACCGGAGAGCGTCCTTTTTCTGATATTATAACAAG
TGTACGTTATTGGATTATTCATAGTATTACAATTCCTTCTTTATTTATTT
CGGGTTGGCTATTTATAAGCACTGGTTTAGCTTATGATGTTTTTGGGACT
CCTAGACCCAATGAATATTTTACACAAGATAGACAGCAAGTTCCATTAGT
AAACGATAGATTTAGTGCTAAAGAAGAATTAGAAGATTTAACACGAGGTT
TATAAATGTCTGGCGGTTCAACCGGAGAGCGTCCTTTTTCTGATATTATA
ACAAGTGTACGTTATTGGATTATTCATAGTATTACAATTCCTTCTTTATT
TATTTCGGGTTGGCTATTTATAAGCACTGGTTTAGCTTATGATGTTTTTG
GGACTCCTAGACCCAATGAATATTTTACACAAGATAGACAGCAAGTTCCA
TTAGTAAACGATAGATTTAGTGCTAAAGAAGAATTAGAAGATTTAACACG
AGGTTTATAA
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