prot_E-siliculosus-1a_F_contig12243.1415.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig12243.1415.1
Unique Name	prot_E-siliculosus-1a_F_contig12243.1415.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	85

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: PSBE_PHATC (Cytochrome b559 subunit alpha n=39 Tax=cellular organisms TaxID=131567 RepID=PSBE_PHATC)

HSP 1 Score: 172 bits (437), Expect = 1.060e-54
Identity = 79/84 (94.05%), Postives = 84/84 (100.00%), Query Frame = 0

Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 84
            MSGGSTGERPFSDIITSVRYWIIHSITIPSLF+SGWLF+STGLAYDVFGTPRPNEYFTQDRQQ+PLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84

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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: PSBE_THAPS (Cytochrome b559 subunit alpha n=117 Tax=Eukaryota TaxID=2759 RepID=PSBE_THAPS)

HSP 1 Score: 172 bits (436), Expect = 1.500e-54
Identity = 80/84 (95.24%), Postives = 84/84 (100.00%), Query Frame = 0

Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 84
            MSGGSTGERPFSDIITSVRYWIIH+ITIPSLF+SGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHTITIPSLFVSGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGL 84

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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: A0A3G1I9C5_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Batrachospermaceae TaxID=31371 RepID=A0A3G1I9C5_9FLOR)

HSP 1 Score: 169 bits (429), Expect = 4.740e-53
Identity = 77/84 (91.67%), Postives = 84/84 (100.00%), Query Frame = 0

Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 84
            MSGGSTGERPFSDIITS+RYW+IHSITIPSLFI+GWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELE+LT+G+
Sbjct:   33 MSGGSTGERPFSDIITSIRYWVIHSITIPSLFIAGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEELTKGI 116

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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: PSBE_GUITH (Cytochrome b559 subunit alpha n=32 Tax=Eukaryota TaxID=2759 RepID=PSBE_GUITH)

HSP 1 Score: 168 bits (426), Expect = 5.050e-53
Identity = 75/84 (89.29%), Postives = 84/84 (100.00%), Query Frame = 0

Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 84
            MSGGSTGERPFSDIITS+RYWIIHSITIP+LF++GWLF+STGLAYD+FGTPRPNEYFTQ+RQQVPLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPALFVAGWLFVSTGLAYDIFGTPRPNEYFTQERQQVPLVNDRFSAKQELEDLTKGL 84

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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: A0A6M3WCX6_COROI (Cytochrome b559 subunit alpha n=87 Tax=Florideophyceae TaxID=2806 RepID=A0A6M3WCX6_COROI)

HSP 1 Score: 169 bits (428), Expect = 5.070e-53
Identity = 75/84 (89.29%), Postives = 84/84 (100.00%), Query Frame = 0

Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 84
            MSGGSTGERPFSDIITS+RYW+IHSITIP+LF++GWLF+STGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELEDLT+G+
Sbjct:   24 MSGGSTGERPFSDIITSIRYWVIHSITIPALFVAGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGI 107

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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: A0A6B9TNT0_SARFS (Cytochrome b559 subunit alpha n=16 Tax=Fucales TaxID=3009 RepID=A0A6B9TNT0_SARFS)

HSP 1 Score: 167 bits (423), Expect = 1.450e-52
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 0

Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 84
            MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLF+STGLAYDVFGTPRPNEYFTQDRQQVPLVNDRF+  +E+ED TRGL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFNVTQEIEDFTRGL 84

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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: PSBE_EMIHU (Cytochrome b559 subunit alpha n=17 Tax=cellular organisms TaxID=131567 RepID=PSBE_EMIHU)

HSP 1 Score: 166 bits (419), Expect = 5.910e-52
Identity = 75/84 (89.29%), Postives = 83/84 (98.81%), Query Frame = 0

Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 84
            MSGGSTGERPFSDIITS+RYWIIHSITIPSLF++G+LF+STGLAYD FGTPRPNEYFTQDRQQ+PLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPSLFVAGFLFVSTGLAYDAFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84

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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: A0A1C9CFD7_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandiaceae TaxID=31478 RepID=A0A1C9CFD7_9FLOR)

HSP 1 Score: 165 bits (417), Expect = 1.270e-51
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 0

Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 84
            MSGGSTGERPFSDIITSVRYW+IHSITIPSLFI+GWLF+STGLAYDVFGTPRP+EYFTQDRQQVPL+NDRFS K+ELEDLT+ +
Sbjct:    1 MSGGSTGERPFSDIITSVRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPDEYFTQDRQQVPLINDRFSVKQELEDLTKSI 84

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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: A0A0D3M5E1_9STRA (Cytochrome b559 subunit alpha n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0D3M5E1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.330e-51
Identity = 74/81 (91.36%), Postives = 81/81 (100.00%), Query Frame = 0

Query:    4 GSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 84
            GSTGERPFSDIITS+RYWIIHSITIPSLF+SGWLF+STGLAYDVFGTPRPNEYF+QDRQQVPLVNDRF+AK+ELEDLT+GL
Sbjct:    3 GSTGERPFSDIITSIRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFSQDRQQVPLVNDRFNAKQELEDLTKGL 83

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BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Match: M1JFG4_DIALT (Cytochrome b559 subunit alpha n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1JFG4_DIALT)

HSP 1 Score: 163 bits (412), Expect = 6.920e-51
Identity = 73/84 (86.90%), Postives = 81/84 (96.43%), Query Frame = 0

Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 84
            MSGGSTGERPF DIITS+RYWIIHSITIPSLF++GWLF++TGLAYD+FGTPRPNEYFT DRQQVPLVNDRFSAK+ELEDLT+ L
Sbjct:    1 MSGGSTGERPFVDIITSIRYWIIHSITIPSLFVAGWLFVATGLAYDIFGTPRPNEYFTADRQQVPLVNDRFSAKQELEDLTKSL 84

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig12243.1415.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PSBE_PHATC	1.060e-54	94.05	Cytochrome b559 subunit alpha n=39 Tax=cellular or...	[more]
PSBE_THAPS	1.500e-54	95.24	Cytochrome b559 subunit alpha n=117 Tax=Eukaryota ...	[more]
A0A3G1I9C5_9FLOR	4.740e-53	91.67	Cytochrome b559 subunit alpha n=3 Tax=Batrachosper...	[more]
PSBE_GUITH	5.050e-53	89.29	Cytochrome b559 subunit alpha n=32 Tax=Eukaryota T...	[more]
A0A6M3WCX6_COROI	5.070e-53	89.29	Cytochrome b559 subunit alpha n=87 Tax=Florideophy...	[more]
A0A6B9TNT0_SARFS	1.450e-52	91.67	Cytochrome b559 subunit alpha n=16 Tax=Fucales Tax...	[more]
PSBE_EMIHU	5.910e-52	89.29	Cytochrome b559 subunit alpha n=17 Tax=cellular or...	[more]
A0A1C9CFD7_9FLOR	1.270e-51	88.10	Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandi...	[more]
A0A0D3M5E1_9STRA	3.330e-51	91.36	Cytochrome b559 subunit alpha n=6 Tax=Eukaryota Ta...	[more]
M1JFG4_DIALT	6.920e-51	86.90	Cytochrome b559 subunit alpha n=2 Tax=Pavlovaceae ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037025	Photosystem II cytochrome b559, alpha subunit superfamily	GENE3D	1.20.5.860		coord: 1..84 e-value: 7.8E-45 score: 152.8
IPR006217	Photosystem II cytochrome b559, alpha subunit	TIGRFAM	TIGR01332	TIGR01332	coord: 3..81 e-value: 3.9E-51 score: 169.0
IPR006217	Photosystem II cytochrome b559, alpha subunit	PIRSF	PIRSF000036	Cytochrome_PsbE	coord: 1..84 e-value: 2.3E-51 score: 169.5
IPR006217	Photosystem II cytochrome b559, alpha subunit	HAMAP	MF_00642	PSII_PsbE	coord: 1..82 score: 32.842
IPR013082	Photosystem II cytochrome b559, alpha subunit, lumenal region	PFAM	PF00284	Cytochrom_B559a	coord: 43..80 e-value: 3.2E-23 score: 81.2
IPR013081	Photosystem II cytochrome b559, N-terminal	PFAM	PF00283	Cytochrom_B559	coord: 7..35 e-value: 2.2E-16 score: 59.0
None	No IPR available	PANTHER	PTHR33391	FAMILY NOT NAMED	coord: 3..83
None	No IPR available	PANTHER	PTHR33391:SF1		coord: 3..83
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 46..84
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..45
None	No IPR available	SUPERFAMILY	161045	Cytochrome b559 subunits	coord: 4..83
None	No IPR available	TMHMM	TMhelix		coord: 21..43
IPR006216	Photosystem II cytochrome b559, conserved site	PROSITE	PS00537	CYTOCHROME_B559	coord: 15..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig12243	contig	E-siliculosus-1a_F_contig12243:196..450 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig12243.1415.1	mRNA_E-siliculosus-1a_F_contig12243.1415.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig12243 196..450 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig12243.1415.1 ID=prot_E-siliculosus-1a_F_contig12243.1415.1|Name=mRNA_E-siliculosus-1a_F_contig12243.1415.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=85bp
MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGT
PRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006216	PSII_cyt_b559_CS
IPR013081	PSII_cyt_b559_N
IPR013082	PSII_cytb559_asu_lum
IPR006217	PSII_cyt_b559_asu
IPR037025	PSII_cyt_b559_asu_sf