mRNA_E-siliculosus-1a_F_contig10128.136.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10128.136.1
Unique NamemRNA_E-siliculosus-1a_F_contig10128.136.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10128.136.1 vs. uniprot
Match: A0A509DRY8_9HYPH (Uncharacterized protein n=1 Tax=Thalassocella blandensis TaxID=2584524 RepID=A0A509DRY8_9HYPH)

HSP 1 Score: 199 bits (505), Expect = 1.630e-60
Identity = 99/151 (65.56%), Postives = 123/151 (81.46%), Query Frame = 1
Query:   25 GRPPGDTRTAEEIIDDNPVLKNLGDQKDIKRDLLKEQCGDWTSDNTDPESRADAAYNMAKVLNWIDGSNDSDGNSR-GLADGDIQGITSSGDARHGTEAGKLKDFAEQGFGVFSDDQRLDKTNDKQVRKDGSNKDNFEHFVDQVGEIFSPV 474
            GRPPGD R+AEEII+DNP LKNLG+QKDIKRD L ++CGDWT +N DP+SRADAAYNM+KVLN+ID + D  GN R    DG+I+GITS GDARHGTEAG LKDFAEQG+G   + ++LD+TND  VR DGSNKDNF+  + ++G+IF+ +
Sbjct:   85 GRPPGDNRSAEEIINDNPALKNLGNQKDIKRDELMKRCGDWTENNPDPKSRADAAYNMSKVLNYIDNTQDRQGNERQNSGDGNIEGITSDGDARHGTEAGMLKDFAEQGYGSLPETRQLDQTNDTHVRLDGSNKDNFQWGMGEMGKIFNKI 235          
BLAST of mRNA_E-siliculosus-1a_F_contig10128.136.1 vs. uniprot
Match: A0A509DU11_9HYPH (Uncharacterized protein n=1 Tax=Thalassocella blandensis TaxID=2584524 RepID=A0A509DU11_9HYPH)

HSP 1 Score: 197 bits (502), Expect = 4.750e-60
Identity = 102/159 (64.15%), Postives = 124/159 (77.99%), Query Frame = 1
Query:    1 RPTAENTDGRPPGDTRTAEEIIDDNPVLKNLGDQKDIKRDLLKEQCGDWTSDNTDPESRADAAYNMAKVLNWIDGSNDSDGNSRGLA-DGDIQGITSSGDARHGTEAGKLKDFAEQGFGVFSDDQRLDKTNDKQVRKDGSNKDNFEHFVDQVGEIFSPV 474
            RPT     GRPPGD R+AEEII+DNP LKNLG+QKDIKR+ LK+QCGDWT  N DP+SRADAAYNM+KVLN+ID + + +G  R  A DG+I+GIT  GDARHGTEAG LKDFAEQG+G     ++LDKTND  VR DGSNKDNF+ F  +VG++ + +
Sbjct:   80 RPTQ--ASGRPPGDNRSAEEIINDNPALKNLGNQKDIKREELKKQCGDWTDANPDPKSRADAAYNMSKVLNYIDNAQNREGGERKNAGDGNIEGITKDGDARHGTEAGMLKDFAEQGYGSLPASRQLDKTNDTHVRLDGSNKDNFQWFAGEVGKVLNKI 236          
BLAST of mRNA_E-siliculosus-1a_F_contig10128.136.1 vs. uniprot
Match: A0A2L0ILA8_9GAMM (Uncharacterized protein n=6 Tax=Enterobacterales TaxID=91347 RepID=A0A2L0ILA8_9GAMM)

HSP 1 Score: 192 bits (488), Expect = 9.450e-58
Identity = 101/165 (61.21%), Postives = 124/165 (75.15%), Query Frame = 1
Query:    1 RPTAENTDGRPPGDTRTAEEIIDDNPVLKNLGDQKDIKRDLLKEQCGDWTSDNTDPESRADAAYNMAKVLNWIDGSNDSDGNSRGLA--DGDIQGITSSGDARHGTEAGKLKDFAEQGFGVFSDDQRLDKTNDKQVRKDGSNKDNFEHFVDQVGEIFS--PVLQA 483
            RPT EN  GRPPGD R+AE+I+D+NPVLKNLG+QKDIKRD LKE+ GDWT+DN DP+SRADAAYNM+ VLN + G ND DG SRG    +G I+GIT  GDARHGTEAG LKD AE+G      D  L +T D  VRKDG+NKDNF+  + ++G + S  P+L++
Sbjct:  108 RPTEENLTGRPPGDNRSAEQILDENPVLKNLGNQKDIKRDQLKERFGDWTADNPDPKSRADAAYNMSCVLNSVKGLNDRDGESRGDVHNNGKIEGITKDGDARHGTEAGVLKDIAEKGLSALPADGNLPQTRDTHVRKDGTNKDNFQWGMGEIGRVLSNIPILKS 272          
BLAST of mRNA_E-siliculosus-1a_F_contig10128.136.1 vs. uniprot
Match: UPI00077C253E (hypothetical protein n=1 Tax=Serratia ficaria TaxID=61651 RepID=UPI00077C253E)

HSP 1 Score: 187 bits (476), Expect = 2.450e-56
Identity = 102/165 (61.82%), Postives = 125/165 (75.76%), Query Frame = 1
Query:    1 RPTAENTDGRPPGDTRTAEEIIDDNPVLKNLGDQKDIKRDLLKEQCGDWTSDNTDPESRADAAYNMAKVLNWIDGSNDSDGNSRG-LAD-GDIQGITSSGDARHGTEAGKLKDFAEQGFGVFSDDQRLDKTNDKQVRKDGSNKDNFEHFVDQVGEIFS--PVLQA 483
            +PT EN  GRPPGDTR+A+E+ID NPVLKNLGDQKDIK D LK++ GDWT +N DP SRADAAYNMA+VLN I G N+ +G+SRG LAD G I GIT  GDARHGTEAG LKD AEQG      +  L +TND  VR DG+NKDNF+  + ++G++ S  P+L++
Sbjct:   82 KPTDENLHGRPPGDTRSAQEVIDANPVLKNLGDQKDIKPDELKQRFGDWTENNPDPASRADAAYNMARVLNNIKGLNNREGDSRGDLADNGKIDGITKGGDARHGTEAGVLKDIAEQGLKALPGNGNLPQTNDSHVRLDGTNKDNFQWAMGEIGKVLSNIPILKS 246          
BLAST of mRNA_E-siliculosus-1a_F_contig10128.136.1 vs. uniprot
Match: A0A1M7KT93_9PSED (Uncharacterized protein n=4 Tax=Pseudomonas TaxID=286 RepID=A0A1M7KT93_9PSED)

HSP 1 Score: 189 bits (481), Expect = 4.160e-56
Identity = 98/152 (64.47%), Postives = 114/152 (75.00%), Query Frame = 1
Query:   25 GRPPGDTRTAEEIIDDNPVLKNLGDQKDIKRDLLKEQCGDWTSDNTDPESRADAAYNMAKVLNWIDGSNDSDGNSRGLAD-GDIQGITSSGDARHGTEAGKLKDFAEQGFGVFSDDQRLDKTNDKQVRKDGSNKDNFEHFVDQVGEIFSPVL 477
            GRP GDTRTAE+IIDDNP+LKNLG QKDIKR     + GDW+ +N DPESRADAAYN AKVLNWI+ S+ +DG +R   D  D+QGIT  GDARHGTEAG  KDF EQG+    DD RLDKTND  VR DGSNKDN + F+ +VG+   PV+
Sbjct:  163 GRPEGDTRTAEQIIDDNPILKNLGYQKDIKRTEAYARIGDWSENNKDPESRADAAYNAAKVLNWINSSDQADGAARQCVDDSDLQGITHDGDARHGTEAGNWKDFVEQGYTALKDDHRLDKTNDSHVRADGSNKDNVQAFLGEVGKNIWPVV 314          
BLAST of mRNA_E-siliculosus-1a_F_contig10128.136.1 vs. uniprot
Match: UPI00034804DF (hypothetical protein n=1 Tax=Erwinia toletana TaxID=92490 RepID=UPI00034804DF)

HSP 1 Score: 188 bits (477), Expect = 8.180e-56
Identity = 100/165 (60.61%), Postives = 126/165 (76.36%), Query Frame = 1
Query:    1 RPTAENTDGRPPGDTRTAEEIIDDNPVLKNLGDQKDIKRDLLKEQCGDWTSDNTDPESRADAAYNMAKVLNWIDGSNDSDGNSRG--LADGDIQGITSSGDARHGTEAGKLKDFAEQGFGVFSDDQRLDKTNDKQVRKDGSNKDNFEHFVDQVGEIFS--PVLQA 483
            +P+ EN  GRP GD RTA++IIDDNPVLKNLGDQKDIKRD LK++ GDWT DN DP+SRADAAYNM+ VLN I G N SDG+ R    A+  I+GIT  GDARHGTEAG LKD AEQG  +  D++ L +T+D  VRKDG+NKDNF+  + ++G++ S  P+L++
Sbjct:  133 KPSEENLQGRPVGDNRTADQIIDDNPVLKNLGDQKDIKRDELKQRFGDWTEDNKDPKSRADAAYNMSCVLNSIKGLNGSDGSERTEISANDKIEGITKDGDARHGTEAGVLKDVAEQGLKMLPDNKNLPETSDTHVRKDGTNKDNFQWGMGEIGKVLSNIPILKS 297          
BLAST of mRNA_E-siliculosus-1a_F_contig10128.136.1 vs. uniprot
Match: A0A545U3J7_9GAMM (Uncharacterized protein n=1 Tax=Exilibacterium tricleocarpae TaxID=2591008 RepID=A0A545U3J7_9GAMM)

HSP 1 Score: 186 bits (472), Expect = 1.130e-55
Identity = 96/156 (61.54%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   25 GRPPGDTRTAEEIIDDNPVLKNLGDQKDIKRDLLKEQCGDWTSDNTDPESRADAAYNMAKVLNWIDGSNDSDGNSR-GLADGDIQGITSSGDARHGTEAGKLKDFAEQGFGVFSDDQRLDKTNDKQVRKDGSNKDNFEHFVDQVGEIFS--PVLQA 483
            GRP GD RTAE+II+DNPVLKNLGDQKDIKR+ LK+QCGDWT  N D E RA+AAYNMAKVLN+ID   + +G  R    D +I+GITS GDAR GTEAG LKDFAEQG+G   ++ +LD+T D  VR DGSNKDNF+  + ++G++ S  P+L++
Sbjct:   85 GRPKGDNRTAEQIIEDNPVLKNLGDQKDIKREELKKQCGDWTEANPDKEDRANAAYNMAKVLNYIDTCQNREGGDRKNSGDANIEGITSCGDARRGTEAGMLKDFAEQGYGSLPENHQLDQTKDSHVRLDGSNKDNFQWVMGEIGKVLSKIPILRS 240          
BLAST of mRNA_E-siliculosus-1a_F_contig10128.136.1 vs. uniprot
Match: L0MLA2_9GAMM (Uncharacterized protein n=14 Tax=Serratia TaxID=613 RepID=L0MLA2_9GAMM)

HSP 1 Score: 186 bits (473), Expect = 1.230e-55
Identity = 103/164 (62.80%), Postives = 122/164 (74.39%), Query Frame = 1
Query:    4 PTAENTDGRPPGDTRTAEEIIDDNPVLKNLGDQKDIKRDLLKEQCGDWTSDNTDPESRADAAYNMAKVLNWIDGSNDSDGNSRG-LAD-GDIQGITSSGDARHGTEAGKLKDFAEQGFGVFSDDQRLDKTNDKQVRKDGSNKDNFEHFVDQVGEIFS--PVLQA 483
            PT +N  GRP GDTR+A+EIID NPVLKNLGDQKDIKRD LK++ GDWT DN DP SRADAAYNMA+VLN I G N+ +G SRG LAD G I GIT  GDARHGTEAG LKD AEQG      +  L +TND  VR DG+NKDNF+  + ++G+  S  P+L++
Sbjct:  104 PTDDNLQGRPAGDTRSAQEIIDANPVLKNLGDQKDIKRDELKKRFGDWTEDNPDPASRADAAYNMARVLNSIKGLNNREGGSRGDLADNGKIDGITKDGDARHGTEAGVLKDIAEQGLKALPSNGNLPQTNDSHVRLDGTNKDNFQWAMGEIGKALSNIPILKS 267          
BLAST of mRNA_E-siliculosus-1a_F_contig10128.136.1 vs. uniprot
Match: UPI000468E5FB (hypothetical protein n=1 Tax=Pantoea sp. IMH TaxID=1267600 RepID=UPI000468E5FB)

HSP 1 Score: 187 bits (475), Expect = 2.000e-55
Identity = 99/165 (60.00%), Postives = 121/165 (73.33%), Query Frame = 1
Query:    1 RPTAENTDGRPPGDTRTAEEIIDDNPVLKNLGDQKDIKRDLLKEQCGDWTSDNTDPESRADAAYNMAKVLNWIDGSNDSDGNSRGLA--DGDIQGITSSGDARHGTEAGKLKDFAEQGFGVFSDDQRLDKTNDKQVRKDGSNKDNFEHFVDQVGEIFS--PVLQA 483
            RPT EN  GRPPGD R+AE+I+D+NPVLKNLG+QKDIKRD LKE+ GDWT  N DP+SRADAAYNMA VLN + G  D +G  RG    +G ++GIT SGDARHGTEAG LKD AE+G      D  L +T D  VRKDG+NKDNF+  + +VG + S  P+L++
Sbjct:  141 RPTEENLTGRPPGDNRSAEQILDENPVLKNLGNQKDIKRDRLKERFGDWTESNPDPKSRADAAYNMACVLNSVKGLKDREGGDRGSVHTNGKLEGITKSGDARHGTEAGVLKDIAEKGLSALPADGNLPQTKDTHVRKDGTNKDNFQWGMGEVGRVLSNIPILKS 305          
BLAST of mRNA_E-siliculosus-1a_F_contig10128.136.1 vs. uniprot
Match: A0A1W6BAU5_9GAMM (Uncharacterized protein n=2 Tax=Pantoea alhagi TaxID=1891675 RepID=A0A1W6BAU5_9GAMM)

HSP 1 Score: 185 bits (470), Expect = 1.010e-54
Identity = 99/165 (60.00%), Postives = 120/165 (72.73%), Query Frame = 1
Query:    1 RPTAENTDGRPPGDTRTAEEIIDDNPVLKNLGDQKDIKRDLLKEQCGDWTSDNTDPESRADAAYNMAKVLNWIDGSNDSDGNSRG--LADGDIQGITSSGDARHGTEAGKLKDFAEQGFGVFSDDQRLDKTNDKQVRKDGSNKDNFEHFVDQVGEIFS--PVLQA 483
            RPT EN  GRPP D R+AE+I+D+NPVLKNLG+QKDIKRD LKE+ GDWT+DN DPESRADAAYNMA VLN I G  D +G  RG    +G I+GIT  GDARHGTEAG LKD AE+G      D  L +T D  VRKDG+ KDNF+  + ++G + S  P+L++
Sbjct:  137 RPTEENLTGRPPDDNRSAEQILDENPVLKNLGNQKDIKRDQLKERFGDWTADNPDPESRADAAYNMACVLNSIKGLKDREGGDRGDVHTNGKIEGITKDGDARHGTEAGVLKDIAEKGLSALPADGNLPQTKDTHVRKDGTTKDNFQWGMGEIGRVLSNIPILKS 301          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10128.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A509DRY8_9HYPH1.630e-6065.56Uncharacterized protein n=1 Tax=Thalassocella blan... [more]
A0A509DU11_9HYPH4.750e-6064.15Uncharacterized protein n=1 Tax=Thalassocella blan... [more]
A0A2L0ILA8_9GAMM9.450e-5861.21Uncharacterized protein n=6 Tax=Enterobacterales T... [more]
UPI00077C253E2.450e-5661.82hypothetical protein n=1 Tax=Serratia ficaria TaxI... [more]
A0A1M7KT93_9PSED4.160e-5664.47Uncharacterized protein n=4 Tax=Pseudomonas TaxID=... [more]
UPI00034804DF8.180e-5660.61hypothetical protein n=1 Tax=Erwinia toletana TaxI... [more]
A0A545U3J7_9GAMM1.130e-5561.54Uncharacterized protein n=1 Tax=Exilibacterium tri... [more]
L0MLA2_9GAMM1.230e-5562.80Uncharacterized protein n=14 Tax=Serratia TaxID=61... [more]
UPI000468E5FB2.000e-5560.00hypothetical protein n=1 Tax=Pantoea sp. IMH TaxID... [more]
A0A1W6BAU5_9GAMM1.010e-5460.00Uncharacterized protein n=2 Tax=Pantoea alhagi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10128contigE-siliculosus-1a_F_contig10128:135..620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size486
Model size486
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelProteobacteria
EggNOG OGs1NWK9@1224,2DVNP@1,33WIK@2
Seed eggNOG ortholog1357272.AVEO02000156_gene1897
Seed ortholog evalue2.9e-47
Seed ortholog score194.9
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.417161-CDS-E-siliculosus-1a_F_contig10128:134..6201622927515.417161-CDS-E-siliculosus-1a_F_contig10128:134..620Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10128 135..620 +
1696318563.0463521-CDS-E-siliculosus-1a_F_contig10128:134..6201696318563.0463521-CDS-E-siliculosus-1a_F_contig10128:134..620Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10128 135..620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10128.136.1prot_E-siliculosus-1a_F_contig10128.136.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10128 135..620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10128.136.1

>prot_E-siliculosus-1a_F_contig10128.136.1 ID=prot_E-siliculosus-1a_F_contig10128.136.1|Name=mRNA_E-siliculosus-1a_F_contig10128.136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=162bp
RPTAENTDGRPPGDTRTAEEIIDDNPVLKNLGDQKDIKRDLLKEQCGDWT
SDNTDPESRADAAYNMAKVLNWIDGSNDSDGNSRGLADGDIQGITSSGDA
RHGTEAGKLKDFAEQGFGVFSDDQRLDKTNDKQVRKDGSNKDNFEHFVDQ
VGEIFSPVLQAF
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mRNA from alignment at E-siliculosus-1a_F_contig10128:135..620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10128.136.1 ID=mRNA_E-siliculosus-1a_F_contig10128.136.1|Name=mRNA_E-siliculosus-1a_F_contig10128.136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=486bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10128:135..620+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCCCCACCGCTGAAAATACCGATGGCCGCCCCCCTGGTGATACACGTAC TGCAGAAGAAATTATTGATGACAACCCCGTCTTAAAAAACCTTGGAGATC AAAAAGATATCAAACGGGATCTGCTCAAAGAACAATGTGGTGATTGGACA TCCGATAACACTGATCCCGAAAGCCGTGCTGATGCAGCCTATAACATGGC CAAAGTTCTCAATTGGATTGACGGCTCAAATGACAGCGATGGGAACTCTC GTGGTCTGGCTGACGGTGATATTCAGGGTATTACCTCAAGTGGAGATGCA CGTCATGGTACTGAAGCAGGCAAGCTAAAAGACTTTGCTGAACAAGGTTT TGGCGTATTTAGTGACGACCAGCGTCTAGATAAGACGAACGACAAACAAG TACGAAAGGATGGGTCAAACAAAGATAATTTTGAGCACTTCGTGGATCAG GTCGGCGAGATTTTCAGCCCAGTACTGCAAGCCTTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10128:135..620+

>mRNA_E-siliculosus-1a_F_contig10128.136.1 ID=mRNA_E-siliculosus-1a_F_contig10128.136.1|Name=mRNA_E-siliculosus-1a_F_contig10128.136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10128:135..620+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCCCCACCGCTGAAAATACCGATGGCCGCCCCCCTGGTGATACACGTAC
TGCAGAAGAAATTATTGATGACAACCCCGTCTTAAAAAACCTTGGAGATC
AAAAAGATATCAAACGGGATCTGCTCAAAGAACAATGTGGTGATTGGACA
TCCGATAACACTGATCCCGAAAGCCGTGCTGATGCAGCCTATAACATGGC
CAAAGTTCTCAATTGGATTGACGGCTCAAATGACAGCGATGGGAACTCTC
GTGGTCTGGCTGACGGTGATATTCAGGGTATTACCTCAAGTGGAGATGCA
CGTCATGGTACTGAAGCAGGCAAGCTAAAAGACTTTGCTGAACAAGGTTT
TGGCGTATTTAGTGACGACCAGCGTCTAGATAAGACGAACGACAAACAAG
TACGAAAGGATGGGTCAAACAAAGATAATTTTGAGCACTTCGTGGATCAG
GTCGGCGAGATTTTCAGCCCAGTACTGCAAGCCTTTCGCCCCACCGCTGA
AAATACCGATGGCCGCCCCCCTGGTGATACACGTACTGCAGAAGAAATTA
TTGATGACAACCCCGTCTTAAAAAACCTTGGAGATCAAAAAGATATCAAA
CGGGATCTGCTCAAAGAACAATGTGGTGATTGGACATCCGATAACACTGA
TCCCGAAAGCCGTGCTGATGCAGCCTATAACATGGCCAAAGTTCTCAATT
GGATTGACGGCTCAAATGACAGCGATGGGAACTCTCGTGGTCTGGCTGAC
GGTGATATTCAGGGTATTACCTCAAGTGGAGATGCACGTCATGGTACTGA
AGCAGGCAAGCTAAAAGACTTTGCTGAACAAGGTTTTGGCGTATTTAGTG
ACGACCAGCGTCTAGATAAGACGAACGACAAACAAGTACGAAAGGATGGG
TCAAACAAAGATAATTTTGAGCACTTCGTGGATCAGGTCGGCGAGATTTT
CAGCCCAGTACTGCAAGCCTTT
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