mRNA_E-siliculosus-1a_F_contig10120.134.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10120.134.1
Unique NamemRNA_E-siliculosus-1a_F_contig10120.134.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A6H5LLH5_9PHAE (RF_PROK_I domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLH5_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 3.580e-127
Identity = 192/196 (97.96%), Postives = 195/196 (99.49%), Query Frame = 1
Query:    1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEV 588
            GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYK+VEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIR ++
Sbjct:  207 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKIVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRGDM 402          
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: D7FJS9_ECTSI (Peptide chain release factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS9_ECTSI)

HSP 1 Score: 383 bits (983), Expect = 1.820e-123
Identity = 192/196 (97.96%), Postives = 195/196 (99.49%), Query Frame = 1
Query:    1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEV 588
            GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQT+DLAEIR ++
Sbjct:  209 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTRDLAEIRGDM 404          
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A835Z7S5_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S5_9STRA)

HSP 1 Score: 307 bits (787), Expect = 2.600e-99
Identity = 146/196 (74.49%), Postives = 174/196 (88.78%), Query Frame = 1
Query:    1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEV 588
            GK+DN G +LTI AGAGGTEAQDWA MLQRMY R+FQR+GF YK++EEE GEVAGIKSC + VEG   YG LAGEKGTHRLVRQSPFNAQAKRQTSFAGVE+FP++E +DL D+ +P+G+LE++TMRSGG GGQNVNKVETGVRM+HIPTGIAVRCTQERSQ++NK LAL M+KE+L+VVMQEQQ  ++A+IR ++
Sbjct:  103 GKFDNAGTQLTIQAGAGGTEAQDWALMLQRMYTRYFQRKGFSYKLIEEEPGEVAGIKSCRIDVEGPLCYGLLAGEKGTHRLVRQSPFNAQAKRQTSFAGVETFPVLELEDLDDVHIPDGDLEITTMRSGGKGGQNVNKVETGVRMRHIPTGIAVRCTQERSQLMNKALALKMIKERLLVVMQEQQAAEVAQIRGDM 298          
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S3UT02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT02_HETAK)

HSP 1 Score: 270 bits (691), Expect = 1.700e-85
Identity = 132/193 (68.39%), Postives = 160/193 (82.90%), Query Frame = 1
Query:    1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIR 579
            G YD+ G R+TI AGAGGT+AQDWAEML RMY R+ + +GF+ + +EE  GEVAGIKS  +++EG +A+G L GEKGTHRLVR SPFNA  KRQTSFA VE+ PI+E DDL D  +P+ ELE++TMRSGG GGQNVNKVET VR++H+PTG+AVRC+QERSQ  NK+LAL MLKEKL+VVM+EQQ KDLAEIR
Sbjct:   62 GSYDDKGVRMTIQAGAGGTDAQDWAEMLLRMYRRYSEIKGFQVRTIEEMPGEVAGIKSAILEIEGPYAFGNLIGEKGTHRLVRLSPFNANNKRQTSFASVETIPIVEMDDLRDFEIPDAELEITTMRSGGKGGQNVNKVETAVRIRHLPTGLAVRCSQERSQGRNKDLALKMLKEKLLVVMEEQQAKDLAEIR 254          
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S2UWG0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG0_9STRA)

HSP 1 Score: 275 bits (702), Expect = 2.640e-85
Identity = 129/196 (65.82%), Postives = 163/196 (83.16%), Query Frame = 1
Query:    1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEV 588
            G YDNC CRLTI AGAGGT+AQDWA ML RMY R+ +R+G++  +++E  GE AGIKS E+++ G FAYG LAGEKGTHRLVR SPFN+  KRQTSFAGVE+ PI+EQDDL    +PE +LEV+TMR+GG GGQNVNKVET VRMKH+PTG++V+CTQER+Q +N+ LAL  LKEK++V+M+EQQ K+LA+IR ++
Sbjct:  206 GPYDNCPCRLTIQAGAGGTDAQDWAAMLLRMYRRYAERQGYQVTLIDEMEGEEAGIKSAELEITGPFAYGRLAGEKGTHRLVRLSPFNSSNKRQTSFAGVETIPIVEQDDLGKFEIPEADLEVTTMRAGGKGGQNVNKVETAVRMKHLPTGLSVKCTQERTQTMNRALALKALKEKILVIMEEQQAKELAQIRGDM 401          
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A0G4ETN2_VITBC (RF_PROK_I domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ETN2_VITBC)

HSP 1 Score: 263 bits (673), Expect = 7.790e-81
Identity = 125/198 (63.13%), Postives = 163/198 (82.32%), Query Frame = 1
Query:    1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEVGQ 594
            G YD  GCRL + AGAGGTE+ DWA+ML RMY+RF QR+G++ ++V+   GE AGIKS E+++EG++AYG L+GEKGTHRLVR SPFNAQ KRQTSFAGVE+ PI+  +D+ D+ + + +LEV+TMRSGG GGQNVNKVET VR+ HIPT I V+CTQERSQ+ NKE+AL MLKE+L+V+ +EQ+ ++LAEIR ++ Q
Sbjct:  203 GPYDRVGCRLYVTAGAGGTESCDWADMLLRMYLRFAQRKGWRARVVDRSDGEEAGIKSAEVEIEGEYAYGLLSGEKGTHRLVRISPFNAQGKRQTSFAGVETMPILPDEDVRDITIDDRDLEVTTMRSGGKGGQNVNKVETAVRILHIPTNIMVKCTQERSQLKNKEIALKMLKERLLVIKEEQRVQELAEIRGDMVQ 400          
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S3UET5_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UET5_9CHLO)

HSP 1 Score: 260 bits (664), Expect = 5.070e-80
Identity = 128/205 (62.44%), Postives = 162/205 (79.02%), Query Frame = 1
Query:    1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIR-----CEVGQKL 600
            G YD CG RLTI AGAGGT+AQDWAEML+RMY+R+ ++RG+K K V+   GE AG+KS  ++++GD AYG L+ E GTHRLVRQSPFN +  RQTSFAGVE  P+++ D   DL  PE +LE++TMRSGG+GGQNVNKVET VR+KHIPTGIAV+CTQERSQ+ NK LA+ +LK KL+V+ Q+QQ K++AEIR      E GQ++
Sbjct:  168 GPYDRCGARLTITAGAGGTDAQDWAEMLERMYLRWCEKRGYKVKNVDRSPGEEAGLKSTTLEIDGDLAYGLLSSENGTHRLVRQSPFNTKGARQTSFAGVEIMPLLDDDVQVDL--PEADLEITTMRSGGAGGQNVNKVETAVRIKHIPTGIAVKCTQERSQVQNKALAMQILKAKLLVIAQQQQAKEIAEIRGDMVKAEWGQQI 370          
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S4LGK2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LGK2_9EUGL)

HSP 1 Score: 258 bits (659), Expect = 1.320e-78
Identity = 133/226 (58.85%), Postives = 174/226 (76.99%), Query Frame = 1
Query:    1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEVGQKLGVD*GRA--HGANRPFILVWRGRENH 672
            G YD  G  LTIM+GAGG EAQDWA ML RMY R+ +R+G+ +++V+E+S +V GIKS E+++ G+++YG LA EKGTHRLVR SP+NAQAKRQTSFA VE  PI+E+++L DL +P+ +LEV+TMRSGG+GGQNVNKVETGVRMKHIPTGI V+CT ERSQ++NK+LAL  LKE+L+ V QEQ+  +LAEIR   G ++  + G+   +    P+ LV   R  H
Sbjct:  227 GPYDKGGALLTIMSGAGGVEAQDWANMLYRMYRRYAERKGWTFRVVDEQSADV-GIKSVEVEIVGEYSYGMLAPEKGTHRLVRISPYNAQAKRQTSFAAVEVMPIVEEENLKDLHIPDSDLEVTTMRSGGAGGQNVNKVETGVRMKHIPTGITVKCTIERSQLMNKDLALKRLKERLLAVQQEQRVAELAEIR---GDQVEANFGQQIRNYVFAPYKLVKDARTAH 448          
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S1T7C5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T7C5_9RHOD)

HSP 1 Score: 255 bits (651), Expect = 2.320e-78
Identity = 120/196 (61.22%), Postives = 160/196 (81.63%), Query Frame = 1
Query:    1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEV 588
            G YD CG  +T++AGAGG +AQDWAEML+RMYIR+ +R+G++ ++VEE  GE AGIKS  +++ G++AYGY++ EKGTHRLVR SPFNAQ KRQTSFAGVE  P++E D ++++ VPE ++E+STMRSGG GGQNVNKVET VR+ H PTG++V+CT  R+Q  NKE AL +LK KL+V+ +EQ+ K+LAEIR +V
Sbjct:  147 GDYDRCGAVVTVLAGAGGVDAQDWAEMLKRMYIRWAERQGYRVEVVEESEGEEAGIKSVTLEISGEYAYGYVSAEKGTHRLVRISPFNAQGKRQTSFAGVEVMPLLEDDQVNNVEVPEKDIEISTMRSGGKGGQNVNKVETAVRVVHTPTGLSVKCTTARTQGENKEKALALLKSKLLVIAREQRVKELAEIRGDV 342          
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Match: A0A7S4DMM9_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DMM9_9EUKA)

HSP 1 Score: 258 bits (658), Expect = 1.110e-77
Identity = 124/193 (64.25%), Postives = 156/193 (80.83%), Query Frame = 1
Query:    1 GKYDNCGCRLTIMAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTKDLAEIR 579
            G YD  G  LTI++GAGGTEAQDWA ML RMY RF  + G++  +VE   GE AG KS  ++++GDFAYGYL GEKGTHRLVR SPFN+  KRQTSFA VE  P +E+D+L ++ +PE +LEV+TMRSGG+GGQNVNKVETGVRMKHIPTGIAVRCTQER+Q++NK++AL M+K KL+V+ +EQ+   L+EI+
Sbjct:  298 GDYDESGAVLTILSGAGGTEAQDWASMLVRMYQRFCDKMGYQASLVEVNPGEEAGYKSATIRIQGDFAYGYLKGEKGTHRLVRLSPFNSLNKRQTSFAKVEVMPTLEEDELEEITIPESDLEVTTMRSGGAGGQNVNKVETGVRMKHIPTGIAVRCTQERTQLMNKKIALEMIKGKLMVIKEEQKAAKLSEIK 490          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10120.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LLH5_9PHAE3.580e-12797.96RF_PROK_I domain-containing protein n=1 Tax=Ectoca... [more]
D7FJS9_ECTSI1.820e-12397.96Peptide chain release factor n=1 Tax=Ectocarpus si... [more]
A0A835Z7S5_9STRA2.600e-9974.49RF_PROK_I domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3UT02_HETAK1.700e-8568.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UWG0_9STRA2.640e-8565.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4ETN2_VITBC7.790e-8163.13RF_PROK_I domain-containing protein n=1 Tax=Vitrel... [more]
A0A7S3UET5_9CHLO5.070e-8062.44Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7S4LGK2_9EUGL1.320e-7858.85Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1T7C5_9RHOD2.320e-7861.22Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S4DMM9_9EUKA1.110e-7764.25Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10120contigE-siliculosus-1a_F_contig10120:541..2603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size576
Model size1097
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03012
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC6.3.2.17
EggNOG OGsCOG0216@1,KOG2726@2759
EggNOG free text desc.translation release factor activity
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003730,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006412,GO:0006415,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010608,GO:0016043,GO:0016070,GO:0016149,GO:0019219,GO:0019222,GO:0019538,GO:0022411,GO:0031323,GO:0031329,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0043565,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311
KEGG Pathwayko00790,ko01100,ko01523,map00790,map01100,map01523
KEGG ReactionR00942,R02237,R04241
KEGG koko:K01930,ko:K02836
KEGG rclassRC00064,RC00090,RC00162
Seed eggNOG ortholog2880.D7FJS9
Seed ortholog evalue9e-96
Seed ortholog score356.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10120.134.1prot_E-siliculosus-1a_F_contig10120.134.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10120 577..2118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.2672384-UTR-E-siliculosus-1a_F_contig10120:540..5761622927515.2672384-UTR-E-siliculosus-1a_F_contig10120:540..576Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10120 541..576 +
1696318562.949-UTR-E-siliculosus-1a_F_contig10120:540..5761696318562.949-UTR-E-siliculosus-1a_F_contig10120:540..576Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10120 541..576 +
1622927515.315771-UTR-E-siliculosus-1a_F_contig10120:2118..26031622927515.315771-UTR-E-siliculosus-1a_F_contig10120:2118..2603Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10120 2119..2603 +
1696318562.9908726-UTR-E-siliculosus-1a_F_contig10120:2118..26031696318562.9908726-UTR-E-siliculosus-1a_F_contig10120:2118..2603Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10120 2119..2603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.2808259-CDS-E-siliculosus-1a_F_contig10120:576..6871622927515.2808259-CDS-E-siliculosus-1a_F_contig10120:576..687Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10120 577..687 +
1696318562.9630527-CDS-E-siliculosus-1a_F_contig10120:576..6871696318562.9630527-CDS-E-siliculosus-1a_F_contig10120:576..687Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10120 577..687 +
1622927515.2930422-CDS-E-siliculosus-1a_F_contig10120:1109..12971622927515.2930422-CDS-E-siliculosus-1a_F_contig10120:1109..1297Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10120 1110..1297 +
1696318562.9724433-CDS-E-siliculosus-1a_F_contig10120:1109..12971696318562.9724433-CDS-E-siliculosus-1a_F_contig10120:1109..1297Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10120 1110..1297 +
1622927515.306051-CDS-E-siliculosus-1a_F_contig10120:1841..21181622927515.306051-CDS-E-siliculosus-1a_F_contig10120:1841..2118Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10120 1842..2118 +
1696318562.9818895-CDS-E-siliculosus-1a_F_contig10120:1841..21181696318562.9818895-CDS-E-siliculosus-1a_F_contig10120:1841..2118Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10120 1842..2118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10120.134.1

>prot_E-siliculosus-1a_F_contig10120.134.1 ID=prot_E-siliculosus-1a_F_contig10120.134.1|Name=mRNA_E-siliculosus-1a_F_contig10120.134.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=192bp
MAGAGGTEAQDWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQ
VEGDFAYGYLAGEKGTHRLVRQSPFNAQAKRQTSFAGVESFPIIEQDDLS
DLVVPEGELEVSTMRSGGSGGQNVNKVETGVRMKHIPTGIAVRCTQERSQ
MLNKELALNMLKEKLVVVMQEQQTKDLAEIRCEVGQKLGVD*
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mRNA from alignment at E-siliculosus-1a_F_contig10120:541..2603+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10120.134.1 ID=mRNA_E-siliculosus-1a_F_contig10120.134.1|Name=mRNA_E-siliculosus-1a_F_contig10120.134.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2063bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10120:541..2603+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCAAGTACGACAACTGCGGCTGCAGGCTGACCATCATGGCCGGCGCGGG GGGAACGGAGGCCCAAGACTGGGCGGAGATGCTGCAGCGGATGTACATCC GGTTCTTCCAGAGGAGGGGCTTCAAGTACAAGATGGTCGAGGAAGAGGTA GGGTAGGGAAGGGAGTGGCACGGGGGGGGGCATGTGGTACACTGAAGAGC AGGGATGTGGAAGACATGTGTTCTACTTGTAAGCAGGTTGGAAAGCATGT GTTCTAGTTTGAGCAGGGATGTTGAATGCATGCGTGTGTTCTATGTTGAG CAGGCGATGGGTGTGGGTAGCTCTCTGCTCTATGAAGGTTCCATGGTTTC ATGACAGCCCTTCAGGTATTCGATACGAGCTTAGACACCGACATGAAAAC AGTAGCACCCTCGAACCAAACAACTCGACACCTACTTCTATGTAGATACC ACGACAAATACGAGATTTGTAACGTGGTGATGGCTGAAGATGAAACATAT CATGGTTGTACGCGACGCGAGGCGTGACGCAAATACGCCTGCTTTCGTAT CCCTGTCTCCATGGCGCAGTCGGGAGAAGTAGCGGGTATCAAGAGCTGCG AGATGCAGGTGGAGGGAGACTTCGCTTACGGTTACCTGGCCGGCGAGAAG GGGACCCACAGACTGGTCCGGCAGTCCCCTTTCAACGCGCAGGCGAAGCG ACAGACCAGCTTCGCGGGAGTGGAGTCGTTTCCGATCATCGAGCAAGATG ACTTATCGTGAGTCGTCGTCCTCCGACCCCATTGTACGGCGTCGTGGGTG CTTTTGCGTTTCGGGGACCCCTGTGTTTGTCATGGGTTTGTTGTTTCTTC TCTGCGCCAAACAACCGCTTGTCACCTCTCCGAGAAGGTCTGATACTAAC GGTCAAACCGCCTCCTGCTTCTTTGGCATCTGTGTGTTAGGATATGGCCT GGCTGAACACCAGCACTACTGCTGTCTTGTCATCCTCAGCAGCACTCTAC CGGTCTCCAAATTCCGCTGCCGTCGAATATTTACGCTTGTTTCCTTTCGG TATCGTCCCGATATTCGCCCACGGCCCACTCACCCCGCAACAAACGAAAT CGGCCGTTTTACCTTGGTCCCTCGATATCCTTCTTGCACCCCCTGCCCCC CACCCCCCTCCGCCGTTTATGTTTCGTTGTGTCTCACTCCCCCCCCCAAA TGGTTTAAAACTGATGCTTTTACCTTGTCTGCTCCTTTGATGTCCTGCTC GTAGCTCCTCCCTCTGAAGTTTTCCATTTGTGTGGTGATACGTGACGGCA GTGATCTCGTGGTTCCGGAGGGAGAGCTGGAGGTTAGCACGATGCGATCA GGGGGGTCGGGGGGGCAGAACGTGAACAAGGTGGAGACCGGGGTGAGAAT GAAGCACATCCCCACGGGGATCGCGGTCAGGTGCACGCAGGAGAGGTCGC AAATGCTCAACAAGGAGCTGGCGCTGAACATGCTCAAGGAGAAGCTGGTG GTGGTCATGCAAGAGCAGCAGACGAAGGATCTCGCCGAGATCAGGTGTGA GGTTGGGCAAAAGTTGGGGGTGGATTGAGGGAGGGCTCACGGCGCAAATC GGCCCTTTATCTTGGTCTGGCGTGGAAGGGAAAACCACTTGGAGGCGTCA TGTCATCCGTTGGCGAATGCGTTTTTTTGCGTTTCATCTCGTCGGTGCAA AGAAGTAATTGCACACCTCTAAAACTACCCAACGATTTGTCGTAGCTTCT TCTTATCGGTAGCTTCCTCCGAATTCCTCCTCTTAGCCAGTAGGTCCTTC CCCATGTCTTGTCCTTGTCATTGACGCAAAGCTGCGGCTCGGAAGCTGAT CACACGTGAGGTGTCATCTCTCTCAGGCCCCCTGATTCTTGCGGAAGGCA GCCAACTGCCGTCGTTTCCTTTTAGGCTGGGAGCTTCAAGGTCTCGCAGC TCCTTCCCTCCATGTGTATCCTCGGCCACCGAAGTTACTGCGTTTGTTTC TTCACCGCTATCAGTTGCAATGGAAAAATTACTGTATTGGTAATGGAGGG AGGCGCGCCGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10120:541..2603+

>mRNA_E-siliculosus-1a_F_contig10120.134.1 ID=mRNA_E-siliculosus-1a_F_contig10120.134.1|Name=mRNA_E-siliculosus-1a_F_contig10120.134.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10120:541..2603+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCGGCGCGGGGGGAACGGAGGCCCAAGACTGGGCGGAGATGCTGCA
GCGGATGTACATCCGGTTCTTCCAGAGGAGGGGCTTCAAGTACAAGATGG
TCGAGGAAGAGATGGCCGGCGCGGGGGGAACGGAGGCCCAAGACTGGGCG
GAGATGCTGCAGCGGATGTACATCCGGTTCTTCCAGAGGAGGGGCTTCAA
GTACAAGATGGTCGAGGAAGAGTCGGGAGAAGTAGCGGGTATCAAGAGCT
GCGAGATGCAGGTGGAGGGAGACTTCGCTTACGGTTACCTGGCCGGCGAG
AAGGGGACCCACAGACTGGTCCGGCAGTCCCCTTTCAACGCGCAGGCGAA
GCGACAGACCAGCTTCGCGGGAGTGGAGTCGTTTCCGATCATCGAGCAAG
ATGACTTATCTCGGGAGAAGTAGCGGGTATCAAGAGCTGCGAGATGCAGG
TGGAGGGAGACTTCGCTTACGGTTACCTGGCCGGCGAGAAGGGGACCCAC
AGACTGGTCCGGCAGTCCCCTTTCAACGCGCAGGCGAAGCGACAGACCAG
CTTCGCGGGAGTGGAGTCGTTTCCGATCATCGAGCAAGATGACTTATCTG
ATCTCGTGGTTCCGGAGGGAGAGCTGGAGGTTAGCACGATGCGATCAGGG
GGGTCGGGGGGGCAGAACGTGAACAAGGTGGAGACCGGGGTGAGAATGAA
GCACATCCCCACGGGGATCGCGGTCAGGTGCACGCAGGAGAGGTCGCAAA
TGCTCAACAAGGAGCTGGCGCTGAACATGCTCAAGGAGAAGCTGGTGGTG
GTCATGCAAGAGCAGCAGACGAAGGATCTCGCCGAGATCAGGTGTGAGGT
TGGGCAAAAGTTGGGGGTGGATTGATGATCTCGTGGTTCCGGAGGGAGAG
CTGGAGGTTAGCACGATGCGATCAGGGGGGTCGGGGGGGCAGAACGTGAA
CAAGGTGGAGACCGGGGTGAGAATGAAGCACATCCCCACGGGGATCGCGG
TCAGGTGCACGCAGGAGAGGTCGCAAATGCTCAACAAGGAGCTGGCGCTG
AACATGCTCAAGGAGAAGCTGGTGGTGGTCATGCAAGAGCAGCAGACGAA
GGATCTCGCCGAGATCAGGTGTGAGGTTGGGCAAAAGTTGGGGGTGGATT
GA
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