mRNA_E-siliculosus-1a_F_contig10119.130.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10119.130.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE) HSP 1 Score: 267 bits (683), Expect = 3.930e-87 Identity = 139/154 (90.26%), Postives = 146/154 (94.81%), Query Frame = -2 Query: 4 FREKIDKVFADTTKKMEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTSLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGATTPTRRMAQVKGSSGGR 465
FREKIDKVFADT+KKM+EGSTG++ALTFL SAL RVVSSSSPEKLVYDLQT AVPTGTPYSEYLT+LQGLVHNVRNLG+VTPQDNTIQLAVRESVSDQYSVLTAS+FKGKEL VV FDNIDTLM ELRNFEAVKGGATTPTRRMAQVK SSG R
Sbjct: 40 FREKIDKVFADTSKKMDEGSTGKKALTFLTSALWRVVSSSSPEKLVYDLQTCAVPTGTPYSEYLTTLQGLVHNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASMFKGKELCVVAFDNIDTLMHELRNFEAVKGGATTPTRRMAQVKSSSGWR 193
BLAST of mRNA_E-siliculosus-1a_F_contig10119.130.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE) HSP 1 Score: 270 bits (690), Expect = 9.110e-86 Identity = 140/154 (90.91%), Postives = 144/154 (93.51%), Query Frame = -2 Query: 4 FREKIDKVFADTTKKMEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTSLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGATTPTRRMAQVKGSSGGR 465
FREKIDKVFADT+KKMEEGSTG++AL FL SALGRVVSSSSPEKLVYDLQTFA PTGTPYSEYLT LQGLV NVRNLG+VTPQDNTIQLAVRESVSDQYSVLTASVFKGKE GVVPFDNIDTLM ELRNFEAVKGGATTPTR MAQVK SSG R
Sbjct: 244 FREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAAPTGTPYSEYLTILQGLVQNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASVFKGKEKGVVPFDNIDTLMHELRNFEAVKGGATTPTRMMAQVKSSSGWR 397
BLAST of mRNA_E-siliculosus-1a_F_contig10119.130.1 vs. uniprot
Match: A0A6H5K8R6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R6_9PHAE) HSP 1 Score: 255 bits (652), Expect = 9.320e-83 Identity = 132/154 (85.71%), Postives = 143/154 (92.86%), Query Frame = -2 Query: 4 FREKIDKVFADTTKKMEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTSLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGATTPTRRMAQVKGSSGGR 465
FREKIDK+F+DT+KKMEE STGR+AL FL SALGRVVSSS PEKLVYDLQT AVPTGTPY EYLT+LQGLVH+VRNLGIVTPQDNTIQLAV ESVSDQ SVLTA VF+GKELGVV FD+IDTLM E+R+FEAV+GGATTPTRRMAQVKGSSGGR
Sbjct: 155 FREKIDKIFSDTSKKMEERSTGRKALAFLTSALGRVVSSSLPEKLVYDLQTLAVPTGTPYGEYLTTLQGLVHSVRNLGIVTPQDNTIQLAVGESVSDQDSVLTACVFRGKELGVVTFDHIDTLMHEVRSFEAVEGGATTPTRRMAQVKGSSGGR 308
BLAST of mRNA_E-siliculosus-1a_F_contig10119.130.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI) HSP 1 Score: 252 bits (643), Expect = 1.700e-82 Identity = 129/139 (92.81%), Postives = 133/139 (95.68%), Query Frame = -2 Query: 4 MEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTSLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGATTPTRRMAQVKGSSGGR 420
M GSTGR+ALTFL SALGRVVSSSSPEKLVYDLQTF VPTGTPYSEYLT+L GLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGK+LG+VPFDNIDTLMQELRNFEAVKGGATTPTRR AQVKGSSGGR
Sbjct: 1 MARGSTGREALTFLTSALGRVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTTLHGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKQLGLVPFDNIDTLMQELRNFEAVKGGATTPTRRSAQVKGSSGGR 139
BLAST of mRNA_E-siliculosus-1a_F_contig10119.130.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE) HSP 1 Score: 215 bits (547), Expect = 1.950e-67 Identity = 117/154 (75.97%), Postives = 125/154 (81.17%), Query Frame = -2 Query: 4 FREKIDKVFADTTKKMEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTSLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGATTPTRRMAQVKGSSGGR 465
FREKI KVF+DT+KK+EEGSTGR+AL FL SALGRVV+SSSPEK+VYDLQTFAVPTGTPY EYLT+LQGL HNVRNL +VTPQDNTIQLAVRE VSDQYSVLTASV KGKELGVV FDN PTRRMAQVKGSSGGR
Sbjct: 9 FREKIGKVFSDTSKKIEEGSTGRKALAFLTSALGRVVNSSSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQFDNX-------------------PTRRMAQVKGSSGGR 143
BLAST of mRNA_E-siliculosus-1a_F_contig10119.130.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE) HSP 1 Score: 178 bits (452), Expect = 1.050e-49 Identity = 95/117 (81.20%), Postives = 100/117 (85.47%), Query Frame = -2 Query: 58 STGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTSLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGG 408
+TG++AL FL SALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLT+LQGLVHNVRNL IVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG RNF+AVKGG
Sbjct: 457 ATGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG--------------RNFKAVKGG 559
BLAST of mRNA_E-siliculosus-1a_F_contig10119.130.1 vs. uniprot
Match: A0A6H5JYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ6_9PHAE) HSP 1 Score: 150 bits (378), Expect = 2.960e-44 Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = -2 Query: 127 MEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTSLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG 420
MEEGSTG++AL FL SALG+VVSSSSPEKLVYDLQ FAVPTGTP SEYLT+LQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQ+ +G+ +G
Sbjct: 1 MEEGSTGKKALAFLTSALGKVVSSSSPEKLVYDLQRFAVPTGTPNSEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQHKCFDRFRVQGQGVG 98
BLAST of mRNA_E-siliculosus-1a_F_contig10119.130.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE) HSP 1 Score: 117 bits (292), Expect = 1.800e-27 Identity = 60/148 (40.54%), Postives = 90/148 (60.81%), Query Frame = -2 Query: 22 FREKIDKVFADTTKKMEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTSLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGVVPFDNIDTLMQELRNFEAVKGGATTPTRRMAQVK 465
+ KI F+ T ++++ G GR+AL FL+ L R +S ++P+ +V+ LQ V GTP+SEY+ +L+ LV N ++G + QDN +QLAVR+SV DQYS + VFKG++L VP+D+I LM L AT R + V+
Sbjct: 540 LKAKITSSFSQTRQQLDNGMAGREALNFLVRVLTRTLSMATPQHVVFALQNLEVDAGTPFSEYMNTLRALVQNAMSVGHESAQDNVLQLAVRDSVCDQYSNIAVDVFKGRDLMAVPYDSIRDLMDALEVLAWNTTEATAVKRNVISVQ 687
BLAST of mRNA_E-siliculosus-1a_F_contig10119.130.1 vs. uniprot
Match: A0A6H5K9S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S7_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 5.160e-19 Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = -2 Query: 289 MEEGSTGRQALTFLISALGRVVSSSSPEKLVYDLQTFAVPTGTP 420
MEEGSTGR+ALTFL SALGRVVSSSSPEKLVYDLQTFAVPTGTP
Sbjct: 1 MEEGSTGRKALTFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTP 44 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10119.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10119.130.1 >prot_E-siliculosus-1a_F_contig10119.130.1 ID=prot_E-siliculosus-1a_F_contig10119.130.1|Name=mRNA_E-siliculosus-1a_F_contig10119.130.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=117bp LSPPRGTLHLCHPPRWRCGPPLHRLEISQFLHQGVDVIERHHSQLLALKHback to top mRNA from alignment at E-siliculosus-1a_F_contig10119:179..644+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10119.130.1 ID=mRNA_E-siliculosus-1a_F_contig10119.130.1|Name=mRNA_E-siliculosus-1a_F_contig10119.130.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=466bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10119:179..644+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10119:179..644+ >mRNA_E-siliculosus-1a_F_contig10119.130.1 ID=mRNA_E-siliculosus-1a_F_contig10119.130.1|Name=mRNA_E-siliculosus-1a_F_contig10119.130.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10119:179..644+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |