prot_E-siliculosus-1a_F_contig12007.1287.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig12007.1287.1
Unique Name	prot_E-siliculosus-1a_F_contig12007.1287.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	84

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5JVY1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.220e-52
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0

Query:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 83
            MAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:   49 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 131

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BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5JVV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVV6_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.110e-51
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0

Query:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 83
            MAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPA ILG
Sbjct:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPAGILG 83

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BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 2.260e-51
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0

Query:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 83
            MAF+EYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:  114 MAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

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BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 2.840e-51
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0

Query:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 83
            MAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:  110 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192

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BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 2.180e-49
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 0

Query:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 83
            MAFIEYNTIMTAF+TPSAVTGEGGLKEDYVPGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:  138 MAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

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BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5JAU1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU1_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.460e-49
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = 0

Query:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 83
            MAFIEYNTI+TAFDTPSA+TGEGGLKEDY+PGDLGFDPLNLKPDD AALDVMKTKELNNGRLAMIGIAGM+AQELVNPADILG
Sbjct:   73 MAFIEYNTIITAFDTPSALTGEGGLKEDYMPGDLGFDPLNLKPDDVAALDVMKTKELNNGRLAMIGIAGMMAQELVNPADILG 155

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BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 5.950e-49
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0

Query:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 83
            MAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct:  310 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392

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BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 4.590e-47
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0

Query:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 82
            MAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPD EAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:  138 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

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BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5JG14_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG14_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.750e-41
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 0

Query:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 83
            MAFIEYNTI  A+  PS VTGEGGL+E+Y PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:    1 MAFIEYNTITKAYAEPSPVTGEGGLREEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 83

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BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 6.270e-39
Identity = 66/83 (79.52%), Postives = 73/83 (87.95%), Query Frame = 0

Query:    1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 83
            MAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct:  139 MAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JVY1_9PHAE	4.220e-52	98.80	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JVV6_9PHAE	1.110e-51	97.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G7S5_ECTSI	2.260e-51	97.59	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K8D0_9PHAE	2.840e-51	98.80	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7G7Q6_ECTSI	2.180e-49	95.18	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A6H5JAU1_9PHAE	2.460e-49	93.98	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JWB4_9PHAE	5.950e-49	98.80	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7Q9_ECTSI	4.590e-47	95.12	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A6H5JG14_9PHAE	3.750e-41	80.72	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7S1_ECTSI	6.270e-39	79.52	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 1..83 e-value: 1.8E-18 score: 69.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 14..74 e-value: 3.4E-18 score: 66.7
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 20..77
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 20..77
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 4..82

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig12007	contig	E-siliculosus-1a_F_contig12007:902..1153 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig12007.1287.1	mRNA_E-siliculosus-1a_F_contig12007.1287.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig12007 2..1730 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig12007.1287.1 ID=prot_E-siliculosus-1a_F_contig12007.1287.1|Name=mRNA_E-siliculosus-1a_F_contig12007.1287.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=84bp
MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALD
VMKTKELNNGRLAMIGIAGMLAQELVNPADILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf