mRNA_E-siliculosus-1a_F_contig12007.1287.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 209 bits (531), Expect = 1.380e-62 Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 3
Query: 3 DHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 311
DHFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct: 94 DHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 208 bits (530), Expect = 6.350e-60 Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 3
Query: 3 DHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 311
DHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct: 290 DHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 202 bits (513), Expect = 1.460e-59 Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 3
Query: 3 DHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 311
DHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDYVPGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct: 118 DHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5JVY1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE) HSP 1 Score: 197 bits (501), Expect = 5.180e-59 Identity = 102/121 (84.30%), Postives = 103/121 (85.12%), Query Frame = 3
Query: 3 DHFQEISAQFPE------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 311
DHFQEISAQFPE FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct: 11 DHFQEISAQFPEPFPLCTFLPAIPVSPQPQFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 131
BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 196 bits (499), Expect = 2.040e-57 Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 3
Query: 6 HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 308
HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPD EAALDVMKTKELNNGRLAMIGIAGMLAQELVN DIL
Sbjct: 119 HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 186 bits (471), Expect = 1.120e-53 Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 3
Query: 36 EFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 311
EFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG
Sbjct: 101 EFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5JAU1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU1_9PHAE) HSP 1 Score: 178 bits (451), Expect = 3.310e-51 Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 3
Query: 36 EFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 311
EFW FSLLGMAFIEYNTI+TAFDTPSA+TGEGGLKEDY+PGDLGFDPLNLKPDD AALDVMKTKELNNGRLAMIGIAGM+AQELVNPADILG
Sbjct: 64 EFWVFSLLGMAFIEYNTIITAFDTPSALTGEGGLKEDYMPGDLGFDPLNLKPDDVAALDVMKTKELNNGRLAMIGIAGMMAQELVNPADILG 155
BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 178 bits (451), Expect = 2.600e-50 Identity = 86/103 (83.50%), Postives = 93/103 (90.29%), Query Frame = 3
Query: 3 DHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 311
DHFQEISAQFPEFWAFSLLGMAFIEYNTI A+ PS VTGEGGL+++Y PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct: 119 DHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5JVV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVV6_9PHAE) HSP 1 Score: 164 bits (416), Expect = 5.610e-47 Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 3
Query: 63 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 311
MAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPA ILG
Sbjct: 1 MAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPAGILG 83
BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Match: A0A6H5L7D2_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D2_9PHAE) HSP 1 Score: 163 bits (412), Expect = 6.090e-46 Identity = 80/102 (78.43%), Postives = 88/102 (86.27%), Query Frame = 3
Query: 3 DHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 308
DHFQEISA+FPEFWAFSLLGM IEYNTI A+ PS VTGEGGL++DY GDLGFDPLNLKP D+AAL+ M+TKELNNGRLAMIGIAGML QELVN +IL
Sbjct: 11 DHFQEISARFPEFWAFSLLGMVLIEYNTITKAYAEPSFVTGEGGLRDDYSLGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNSINIL 112 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12007.1287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig12007.1287.1 >prot_E-siliculosus-1a_F_contig12007.1287.1 ID=prot_E-siliculosus-1a_F_contig12007.1287.1|Name=mRNA_E-siliculosus-1a_F_contig12007.1287.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=84bp MAFIEYNTIMTAFDTPSAVTGEGGLKEDYVPGDLGFDPLNLKPDDEAALDback to top mRNA from alignment at E-siliculosus-1a_F_contig12007:2..1730- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig12007.1287.1 ID=mRNA_E-siliculosus-1a_F_contig12007.1287.1|Name=mRNA_E-siliculosus-1a_F_contig12007.1287.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1729bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12007:2..1730- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12007:2..1730- >mRNA_E-siliculosus-1a_F_contig12007.1287.1 ID=mRNA_E-siliculosus-1a_F_contig12007.1287.1|Name=mRNA_E-siliculosus-1a_F_contig12007.1287.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12007:2..1730- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |