mRNA_E-siliculosus-1a_F_contig1196.1245.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1196.1245.1
Unique NamemRNA_E-siliculosus-1a_F_contig1196.1245.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1196.1245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1196contigE-siliculosus-1a_F_contig1196:3371..3931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size528
Model size562
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927713.6760306-UTR-E-siliculosus-1a_F_contig1196:3370..34031622927713.6760306-UTR-E-siliculosus-1a_F_contig1196:3370..3403Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1196 3371..3403 +
1696318650.3680363-UTR-E-siliculosus-1a_F_contig1196:3370..34031696318650.3680363-UTR-E-siliculosus-1a_F_contig1196:3370..3403Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1196 3371..3403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927713.6904826-CDS-E-siliculosus-1a_F_contig1196:3403..39311622927713.6904826-CDS-E-siliculosus-1a_F_contig1196:3403..3931Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1196 3404..3931 +
1696318650.3755352-CDS-E-siliculosus-1a_F_contig1196:3403..39311696318650.3755352-CDS-E-siliculosus-1a_F_contig1196:3403..3931Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1196 3404..3931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1196.1245.1prot_E-siliculosus-1a_F_contig1196.1245.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1196 3404..3931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1196.1245.1

>prot_E-siliculosus-1a_F_contig1196.1245.1 ID=prot_E-siliculosus-1a_F_contig1196.1245.1|Name=mRNA_E-siliculosus-1a_F_contig1196.1245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=176bp
MFGCQRYDMCTPLGIFVALLYFPTLMSDIYCVHNTENLKTPKKRNTANLQ
ICACYRFFSSGREATRFGVHVDVSVRVMQEEGHATGGVFFLFSTFPLLLC
LPSHFFPRRIPPLPTLVDPMMWCRRNLCIREFKHRAHTSDSSPLLAPTVC
LSTLVSSPPRVFVVQQQYQPKLFSLL
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mRNA from alignment at E-siliculosus-1a_F_contig1196:3371..3931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1196.1245.1 ID=mRNA_E-siliculosus-1a_F_contig1196.1245.1|Name=mRNA_E-siliculosus-1a_F_contig1196.1245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=561bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1196:3371..3931+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGCGGCGGGTCTAGAGGCGGTCGTCAACAACTATGTTCGGCTGTCAGAG
GTACGATATGTGCACGCCCCTCGGCATTTTTGTTGCCTTATTATATTTTC
CCACCCTGATGTCTGATATATATTGCGTCCACAACACTGAAAACTTAAAG
ACACCCAAAAAACGAAACACAGCCAACCTACAGATATGTGCGTGTTATCG
TTTCTTCAGTTCTGGACGTGAGGCTACGCGTTTTGGTGTACATGTAGACG
TATCAGTCAGGGTCATGCAGGAGGAAGGCCACGCAACAGGAGGAGTATTT
TTTTTGTTCTCCACGTTCCCGCTGCTATTGTGTTTGCCTTCACATTTTTT
CCCGAGAAGGATTCCGCCGTTGCCGACACTGGTGGACCCCATGATGTGGT
GTCGGAGAAATCTGTGCATTCGTGAATTTAAACACCGTGCGCACACATCA
GACAGCTCCCCCCTCCTGGCTCCAACCGTATGTTTGAGTACTCTTGTGTC
ATCCCCCCCGCGTGTTTTTGTCGTCCAACAGCAGTACCAACCCAAGTTGT
TCAGCCTTTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1196:3371..3931+

>mRNA_E-siliculosus-1a_F_contig1196.1245.1 ID=mRNA_E-siliculosus-1a_F_contig1196.1245.1|Name=mRNA_E-siliculosus-1a_F_contig1196.1245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1056bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1196:3371..3931+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCGGCTGTCAGAGGTACGATATGTGCACGCCCCTCGGCATTTTTGT
TGCCTTATTATATTTTCCCACCCTGATGTCTGATATATATTGCGTCCACA
ACACTGAAAACTTAAAGACACCCAAAAAACGAAACACAGCCAACCTACAG
ATATGTGCGTGTTATCGTTTCTTCAGTTCTGGACGTGAGGCTACGCGTTT
TGGTGTACATGTAGACGTATCAGTCAGGGTCATGCAGGAGGAAGGCCACG
CAACAGGAGGAGTATTTTTTTTGTTCTCCACGTTCCCGCTGCTATTGTGT
TTGCCTTCACATTTTTTCCCGAGAAGGATTCCGCCGTTGCCGACACTGGT
GGACCCCATGATGTGGTGTCGGAGAAATCTGTGCATTCGTGAATTTAAAC
ACCGTGCGCACACATCAGACAGCTCCCCCCTCCTGGCTCCAACCGTATGT
TTGAGTACTCTTGTGTCATCCCCCCCGCGTGTTTTTGTCGTCCAACAGCA
GTACCAACCCAAGTTGTTCAGCCTTTTGATGTTCGGCTGTCAGAGGTACG
ATATGTGCACGCCCCTCGGCATTTTTGTTGCCTTATTATATTTTCCCACC
CTGATGTCTGATATATATTGCGTCCACAACACTGAAAACTTAAAGACACC
CAAAAAACGAAACACAGCCAACCTACAGATATGTGCGTGTTATCGTTTCT
TCAGTTCTGGACGTGAGGCTACGCGTTTTGGTGTACATGTAGACGTATCA
GTCAGGGTCATGCAGGAGGAAGGCCACGCAACAGGAGGAGTATTTTTTTT
GTTCTCCACGTTCCCGCTGCTATTGTGTTTGCCTTCACATTTTTTCCCGA
GAAGGATTCCGCCGTTGCCGACACTGGTGGACCCCATGATGTGGTGTCGG
AGAAATCTGTGCATTCGTGAATTTAAACACCGTGCGCACACATCAGACAG
CTCCCCCCTCCTGGCTCCAACCGTATGTTTGAGTACTCTTGTGTCATCCC
CCCCGCGTGTTTTTGTCGTCCAACAGCAGTACCAACCCAAGTTGTTCAGC
CTTTTG
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