mRNA_E-siliculosus-1a_F_contig119.1217.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig119.1217.1
Unique NamemRNA_E-siliculosus-1a_F_contig119.1217.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: D7FYT6_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT6_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 1.630e-130
Identity = 199/201 (99.00%), Postives = 199/201 (99.00%), Query Frame = 2
Query:    2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
            EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVN PGGMDSPLVKGQPLLFGTVNGMVGTIL LTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH
Sbjct:  935 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNSPGGMDSPLVKGQPLLFGTVNGMVGTILTLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 1135          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A5K0XSM8_9MAGN (CPSF_A domain-containing protein (Fragment) n=11 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0XSM8_9MAGN)

HSP 1 Score: 203 bits (517), Expect = 1.610e-61
Identity = 101/201 (50.25%), Postives = 139/201 (69.15%), Query Frame = 2
Query:    2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
            E ARDY ANWMTAVE+L+DD+Y+G E + NIFT+R+N DAAT+EER+RLE+ GE+HLGEFVN+F  GSL+M+          DS       ++F T+NG++G I +L  D + FL +LQ  + KV+KGVGG SH++WRSF N ++ S   NF+DGDL+ES+LD+ R+  EE+   +  PV       E++  RVEE+ RLH
Sbjct:    8 ECARDYGANWMTAVEILDDDIYLGAENNFNIFTVRKNMDAATDEERSRLEVVGEYHLGEFVNRFRHGSLVMRMP--------DSDSGNIPTVIFATINGVIGVIASLPHDQYLFLEKLQMNLNKVIKGVGGLSHEQWRSFCNEKKVSEPRNFLDGDLIESFLDLNRNRMEEISTAMAVPV-------EELCRRVEELTRLH 193          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A444E478_ENSVE (CPSF_A domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444E478_ENSVE)

HSP 1 Score: 203 bits (516), Expect = 8.880e-61
Identity = 97/201 (48.26%), Postives = 142/201 (70.65%), Query Frame = 2
Query:    2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
            E+ARDY+ANWM+AVE+L+DDV++G E + N+FT+R+N+DAAT+EER RLE+ GE+HLGEFVN+F  GSL+M+          DS       ++FGT+NG++G + +L  D + FL +LQ  + KV+KGVGG SH++WRSF N ++T  + NF+DGDL+ES+LD+ R   +E+   +  P+       E++  RVEE+ RLH
Sbjct:   51 ELARDYNANWMSAVEILDDDVFLGAENNYNLFTVRKNSDAATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSEAGHIPTVIFGTINGVIGVVASLPHDQYVFLEKLQANLVKVIKGVGGLSHEQWRSFNNEKKTVDARNFLDGDLIESFLDLSRSRMDEIASSMAVPL-------EELCKRVEELTRLH 236          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A1Y1HSK5_KLENI (DNA damage-binding protein 1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSK5_KLENI)

HSP 1 Score: 217 bits (552), Expect = 6.670e-60
Identity = 106/201 (52.74%), Postives = 144/201 (71.64%), Query Frame = 2
Query:    2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
            E ARD++ANWMTAVE L+DDVY+G E   N+FT+R+N+DAA++EER RLE+ GEFHLGEFVN+F  GSL+M+          DS       ++FGTVNG++G I +L +D   +L +LQ  +T+V+KGVGGFSHD WRSF+N R+T+ + NF+DGDL+E +LD+ R   EEV + +DT        VED+  R+EE+QRLH
Sbjct:  905 ERARDFNANWMTAVEALDDDVYLGAENSFNLFTVRKNSDAASDEERGRLEVTGEFHLGEFVNRFRPGSLVMRMP--------DSEAAHIPTVIFGTVNGVIGVIASLPQDQFTYLHKLQNCLTEVIKGVGGFSHDHWRSFSNERKTNEARNFLDGDLIEQFLDLRREKMEEVAKKMDT-------TVEDLSKRIEELQRLH 1090          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A446KEV9_TRITD (DNA damage-binding protein 1 n=3 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446KEV9_TRITD)

HSP 1 Score: 212 bits (539), Expect = 6.950e-60
Identity = 102/201 (50.75%), Postives = 145/201 (72.14%), Query Frame = 2
Query:    2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
            E+ARDY+ANWMTAVEM++DD+Y+G E   N+FT+R+N+DAAT+EER RLE+ GE+HLGEFVN+F  GSL+M+          DS + +   ++FGT+NG++G I +L  D++ FL +LQT + K +KGVG  SH++WRSF N ++TS + NF+DGDL+ES+LD+ R   EEV + +  PV       E++  RVEE+ RLH
Sbjct:  460 ELARDYNANWMTAVEMIDDDIYVGAENSYNLFTVRKNSDAATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSEMGQIPTVIFGTINGVIGIIASLPHDHYVFLEKLQTTLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRAKMEEVAKAMAVPV-------EELSKRVEELMRLH 645          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A7S0T4Q9_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T4Q9_9CHLO)

HSP 1 Score: 200 bits (509), Expect = 1.540e-59
Identity = 105/202 (51.98%), Postives = 139/202 (68.81%), Query Frame = 2
Query:    2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRR--TSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRL 601
            E ARD++ NWMTAVE+L+DD Y+G E   N+FT+R+NADAAT+EER+RLE+ GE+HLGEFVN+F RGSL+M+          DS       LLFGTVNG++G + +L E+   FL  LQ A+ KVV GVGG SH++WRSF N  R   + + N++DGDLVES+LD+ R   EEV   VDTP+       +++  RVEE+ RL
Sbjct:   62 ERARDFNPNWMTAVEILDDDTYLGAENSFNLFTVRKNADAATDEERSRLEVVGEYHLGEFVNRFRRGSLVMRLP--------DSDHADIPTLLFGTVNGVIGVLASLPEEQFNFLWALQKALNKVVSGVGGLSHEQWRSFHNEHRGRATEAKNYVDGDLVESFLDLRREKAEEVAALVDTPL-------DELTKRVEELVRL 248          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A426XYZ2_ENSVE (CPSF_A domain-containing protein (Fragment) n=2 Tax=commelinids TaxID=4734 RepID=A0A426XYZ2_ENSVE)

HSP 1 Score: 203 bits (516), Expect = 2.320e-59
Identity = 97/201 (48.26%), Postives = 142/201 (70.65%), Query Frame = 2
Query:    2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
            E+ARDY+ANWM+AVE+L+DDV++G E + N+FT+R+N+DAAT+EER RLE+ GE+HLGEFVN+F  GSL+M+          DS       ++FGT+NG++G + +L  D + FL +LQ  + KV+KGVGG SH++WRSF N ++T  + NF+DGDL+ES+LD+ R   +E+   +  P+       E++  RVEE+ RLH
Sbjct:  162 ELARDYNANWMSAVEILDDDVFLGAENNYNLFTVRKNSDAATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSEAGHIPTVIFGTINGVIGVVASLPHDQYVFLEKLQANLVKVIKGVGGLSHEQWRSFNNEKKTVDARNFLDGDLIESFLDLSRSRMDEIASSMAVPL-------EELCKRVEELTRLH 347          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A022PY42_ERYGU (CPSF_A domain-containing protein (Fragment) n=2 Tax=Lamiales TaxID=4143 RepID=A0A022PY42_ERYGU)

HSP 1 Score: 209 bits (532), Expect = 2.680e-59
Identity = 101/201 (50.25%), Postives = 147/201 (73.13%), Query Frame = 2
Query:    2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
            E ARDY+ANWM+AVE+L+DD+Y+G E + N+FT+R+N++ AT+EER RLE+ GE+HLGEFVN+F  GSL+M+          DS + +   ++FGTVNG++G I +L  + + FL +LQT M KV+KGVGG SH++WRSF N ++T  + NF+DGDL+ES+LD+ R+  EEV + ++ PV       E+++ RVEE+ RLH
Sbjct:  404 ERARDYNANWMSAVEILDDDIYVGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSDVGQIPTVIFGTVNGVIGVIASLPHEQYVFLEKLQTNMRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLNRNQMEEVSKAINVPV-------EELMKRVEELTRLH 589          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A388JU08_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JU08_CHABU)

HSP 1 Score: 215 bits (547), Expect = 2.760e-59
Identity = 105/201 (52.24%), Postives = 144/201 (71.64%), Query Frame = 2
Query:    2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
            E A DY+ANWMTAVE+L+DD+Y+G E   N+FT+R+N+DAA++EER RLE+ G++HLGEFVN    GSL+M+          DS   +   ++FGTVNG++G I +L ++   FL +LQ  +TKV+KGVGGFSHD+WRSF N RRT+ + NF+DGDL+E++LD+ RH  +EV R +D PV       E++  RVEEM RLH
Sbjct:  863 ERAHDYNANWMTAVEILDDDIYLGAENSFNLFTVRKNSDAASDEERGRLELVGDYHLGEFVNPIRHGSLVMRLP--------DSEASQIPTVIFGTVNGVIGVIASLQQEQFAFLHKLQKCLTKVIKGVGGFSHDQWRSFCNERRTTDAKNFLDGDLIEAFLDLKRHRMDEVSRMMDVPV-------EELCKRVEEMTRLH 1048          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A446KEU6_TRITD (DNA damage-binding protein 1 n=5 Tax=Poaceae TaxID=4479 RepID=A0A446KEU6_TRITD)

HSP 1 Score: 212 bits (539), Expect = 9.930e-59
Identity = 102/201 (50.75%), Postives = 145/201 (72.14%), Query Frame = 2
Query:    2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
            E+ARDY+ANWMTAVEM++DD+Y+G E   N+FT+R+N+DAAT+EER RLE+ GE+HLGEFVN+F  GSL+M+          DS + +   ++FGT+NG++G I +L  D++ FL +LQT + K +KGVG  SH++WRSF N ++TS + NF+DGDL+ES+LD+ R   EEV + +  PV       E++  RVEE+ RLH
Sbjct:  665 ELARDYNANWMTAVEMIDDDIYVGAENSYNLFTVRKNSDAATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSEMGQIPTVIFGTINGVIGIIASLPHDHYVFLEKLQTTLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRAKMEEVAKAMAVPV-------EELSKRVEELMRLH 850          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYT6_ECTSI1.630e-13099.00N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT6_ECT... [more]
A0A5K0XSM8_9MAGN1.610e-6150.25CPSF_A domain-containing protein (Fragment) n=11 T... [more]
A0A444E478_ENSVE8.880e-6148.26CPSF_A domain-containing protein n=1 Tax=Ensete ve... [more]
A0A1Y1HSK5_KLENI6.670e-6052.74DNA damage-binding protein 1 n=1 Tax=Klebsormidium... [more]
A0A446KEV9_TRITD6.950e-6050.75DNA damage-binding protein 1 n=3 Tax=Triticum turg... [more]
A0A7S0T4Q9_9CHLO1.540e-5951.98Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A426XYZ2_ENSVE2.320e-5948.26CPSF_A domain-containing protein (Fragment) n=2 Ta... [more]
A0A022PY42_ERYGU2.680e-5950.25CPSF_A domain-containing protein (Fragment) n=2 Ta... [more]
A0A388JU08_CHABU2.760e-5952.24Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A446KEU6_TRITD9.930e-5950.75DNA damage-binding protein 1 n=5 Tax=Poaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig119contigE-siliculosus-1a_F_contig119:79491..80823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size576
Model size984
Exons3
Ec32 orthologEc-19_002450.1
Ec32 ortholog descriptionWD40-repeat-containing domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.A
EggNOG OGsKOG1897@1,KOG1897@2759
EggNOG free text desc.damaged DNA binding
GOsGO:0000003,GO:0000151,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010498,GO:0019538,GO:0019941,GO:0022414,GO:0030163,GO:0031461,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0061458,GO:0071704,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
KEGG ModuleM00385,M00386
KEGG Pathwayko03420,ko04120,ko05161,ko05203,map03420,map04120,map05161,map05203
KEGG koko:K10610
Preferred nameDDB1A
Seed eggNOG ortholog2880.D7FYT6
Seed ortholog evalue1.6e-105
Seed ortholog score388.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig119.1217.1prot_E-siliculosus-1a_F_contig119.1217.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig119 79868..80792 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927708.492005-UTR-E-siliculosus-1a_F_contig119:79490..798671622927708.492005-UTR-E-siliculosus-1a_F_contig119:79490..79867Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig119 79491..79867 -
1696318648.1863706-UTR-E-siliculosus-1a_F_contig119:79490..798671696318648.1863706-UTR-E-siliculosus-1a_F_contig119:79490..79867Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig119 79491..79867 -
1622927708.5965815-UTR-E-siliculosus-1a_F_contig119:80792..808231622927708.5965815-UTR-E-siliculosus-1a_F_contig119:80792..80823Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig119 80793..80823 -
1696318648.2360048-UTR-E-siliculosus-1a_F_contig119:80792..808231696318648.2360048-UTR-E-siliculosus-1a_F_contig119:80792..80823Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig119 80793..80823 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927708.5661252-CDS-E-siliculosus-1a_F_contig119:79867..802571622927708.5661252-CDS-E-siliculosus-1a_F_contig119:79867..80257Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 79868..80257 -
1696318648.1982703-CDS-E-siliculosus-1a_F_contig119:79867..802571696318648.1982703-CDS-E-siliculosus-1a_F_contig119:79867..80257Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 79868..80257 -
1622927708.5763142-CDS-E-siliculosus-1a_F_contig119:80470..805711622927708.5763142-CDS-E-siliculosus-1a_F_contig119:80470..80571Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 80471..80571 -
1696318648.2079887-CDS-E-siliculosus-1a_F_contig119:80470..805711696318648.2079887-CDS-E-siliculosus-1a_F_contig119:80470..80571Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 80471..80571 -
1622927708.5862978-CDS-E-siliculosus-1a_F_contig119:80707..807921622927708.5862978-CDS-E-siliculosus-1a_F_contig119:80707..80792Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 80708..80792 -
1696318648.2228425-CDS-E-siliculosus-1a_F_contig119:80707..807921696318648.2228425-CDS-E-siliculosus-1a_F_contig119:80707..80792Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 80708..80792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig119.1217.1

>prot_E-siliculosus-1a_F_contig119.1217.1 ID=prot_E-siliculosus-1a_F_contig119.1217.1|Name=mRNA_E-siliculosus-1a_F_contig119.1217.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=192bp
MTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEF
VNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTED
NHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVES
YLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH*
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mRNA from alignment at E-siliculosus-1a_F_contig119:79491..80823-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig119.1217.1 ID=mRNA_E-siliculosus-1a_F_contig119.1217.1|Name=mRNA_E-siliculosus-1a_F_contig119.1217.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1333bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:79491..80823- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGGTTGCTAGGGACTACCACGCAAACTGGATGACTGCGGTCGAGATGC TGAACGACGACGTGTACATCGGCGGAGAAGCCGACTGCAACATCTTCACT TTGCGAAGAAACGCAGGCAAGCACCAAGAGTAGGTACAAGTAGAGTAGGT TTGTTTGCTTGAAGAGACTGGCACTCCTGGGAATCTGTTCATGTGAACCC TTGAATAGAAGCAAGAAGTTGACCCCCTCCCTCACGCGTCATGTCTCCCC AGACGCTGCAACCGAAGAAGAAAGGGCTCGGCTGGAGATCCAGGGCGAGT TCCATCTCGGCGAGTTCGTGAACAAGTTTTGCCGGGGATCTCTTCTCATG CAGGTAAACCCTATGTTCCTGATAGTGCATTCCTCTGCCGTTCTTTCAAT GTGGGACCTGTAGAGTATTAGAAGTAGCAAAAAAGGGTCGGACATCGGCG TTCGTTGTGGCTTTGAAGTGCTCGTGGTTTTTCATGTCGCTCGTCGATCA CCCTTGTCTCTAACGGTGTTCTCCTGCGTTGTGTTTTGACCTCTCCGCGA CCACTACTTCCCACAGTCTTCCGAGGTAAACGGTCCAGGTGGGATGGACA GCCCACTCGTAAAGGGGCAACCGCTACTTTTTGGAACTGTCAATGGCATG GTGGGAACAATCCTCAACTTGACGGAGGACAACCACCGGTTTTTGGCCCA ATTACAAACTGCGATGACCAAGGTCGTGAAGGGGGTCGGAGGCTTCAGTC ACGATGAATGGCGATCATTCACCAACGGGCGCCGGACGTCCCCGTCTTCG AATTTCATCGATGGAGATCTGGTTGAATCTTACCTCGACATGCCTCGTCA CAACCAAGAAGAGGTGTTGAGGCACGTCGACACTCCAGTGGGAGATAAGC AGTGGGCCGTGGAGGATGTAGTCGTCAGGGTCGAAGAAATGCAGCGGTTG CACTAGGGTGCGAAAGAGTAGAGTTGGCACGCATGACTTAGTTGTATATA TTGGGCTCATCGCGCTATGCCGGATTTTACGGCGGCACGGTAGGCAGGAT CTTGTACGATGAGGACGAGTGGTTTCGATGTAATCTTGTGGAAGTATGAT GGAAACAGACACTCCCAAATTTATTTGCCAGCAAGCGAAAGGCATCACAA AGAGAGCAAAACGCGACTGCATGGGGAGAAAAGGATTTTCCTATCGGTCA TCAGGTGTCGCTGATTGTTGCTGGCCGAATAGATTTCCATGTTGGGTGTA ACGTCGCCGAGGACAGGACGTTGCATTGAAACGCCCTCCGCCCTCGCTGT CTCGTACGTTGTCGTTGAGTTCTGCGTGTCGCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig119:79491..80823-

>mRNA_E-siliculosus-1a_F_contig119.1217.1 ID=mRNA_E-siliculosus-1a_F_contig119.1217.1|Name=mRNA_E-siliculosus-1a_F_contig119.1217.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:79491..80823- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACTGCGGTCGAGATGCTGAACGACGACGTGTACATCGGCGGAGAAGC
CGACTGCAACATCTTCACTTTGCGAAGAAACGCAGATGACTGCGGTCGAG
ATGCTGAACGACGACGTGTACATCGGCGGAGAAGCCGACTGCAACATCTT
CACTTTGCGAAGAAACGCAGACGCTGCAACCGAAGAAGAAAGGGCTCGGC
TGGAGATCCAGGGCGAGTTCCATCTCGGCGAGTTCGTGAACAAGTTTTGC
CGGGGATCTCTTCTCATGCAGACGCTGCAACCGAAGAAGAAAGGGCTCGG
CTGGAGATCCAGGGCGAGTTCCATCTCGGCGAGTTCGTGAACAAGTTTTG
CCGGGGATCTCTTCTCATGCAGTCTTCCGAGGTAAACGGTCCAGGTGGGA
TGGACAGCCCACTCGTAAAGGGGCAACCGCTACTTTTTGGAACTGTCAAT
GGCATGGTGGGAACAATCCTCAACTTGACGGAGGACAACCACCGGTTTTT
GGCCCAATTACAAACTGCGATGACCAAGGTCGTGAAGGGGGTCGGAGGCT
TCAGTCACGATGAATGGCGATCATTCACCAACGGGCGCCGGACGTCCCCG
TCTTCGAATTTCATCGATGGAGATCTGGTTGAATCTTACCTCGACATGCC
TCGTCACAACCAAGAAGAGGTGTTGAGGCACGTCGACACTCCAGTGGGAG
ATAAGCAGTGGGCCGTGGAGGATGTAGTCGTCAGGGTCGAAGAAATGCAG
CGGTTGCACTAGTCTTCCGAGGTAAACGGTCCAGGTGGGATGGACAGCCC
ACTCGTAAAGGGGCAACCGCTACTTTTTGGAACTGTCAATGGCATGGTGG
GAACAATCCTCAACTTGACGGAGGACAACCACCGGTTTTTGGCCCAATTA
CAAACTGCGATGACCAAGGTCGTGAAGGGGGTCGGAGGCTTCAGTCACGA
TGAATGGCGATCATTCACCAACGGGCGCCGGACGTCCCCGTCTTCGAATT
TCATCGATGGAGATCTGGTTGAATCTTACCTCGACATGCCTCGTCACAAC
CAAGAAGAGGTGTTGAGGCACGTCGACACTCCAGTGGGAGATAAGCAGTG
GGCCGTGGAGGATGTAGTCGTCAGGGTCGAAGAAATGCAGCGGTTGCACT
AG
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