mRNA_E-siliculosus-1a_F_contig119.1217.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: D7FYT6_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT6_ECTSI) HSP 1 Score: 408 bits (1049), Expect = 1.630e-130 Identity = 199/201 (99.00%), Postives = 199/201 (99.00%), Query Frame = 2
Query: 2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVN PGGMDSPLVKGQPLLFGTVNGMVGTIL LTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH
Sbjct: 935 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNSPGGMDSPLVKGQPLLFGTVNGMVGTILTLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 1135
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A5K0XSM8_9MAGN (CPSF_A domain-containing protein (Fragment) n=11 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0XSM8_9MAGN) HSP 1 Score: 203 bits (517), Expect = 1.610e-61 Identity = 101/201 (50.25%), Postives = 139/201 (69.15%), Query Frame = 2
Query: 2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
E ARDY ANWMTAVE+L+DD+Y+G E + NIFT+R+N DAAT+EER+RLE+ GE+HLGEFVN+F GSL+M+ DS ++F T+NG++G I +L D + FL +LQ + KV+KGVGG SH++WRSF N ++ S NF+DGDL+ES+LD+ R+ EE+ + PV E++ RVEE+ RLH
Sbjct: 8 ECARDYGANWMTAVEILDDDIYLGAENNFNIFTVRKNMDAATDEERSRLEVVGEYHLGEFVNRFRHGSLVMRMP--------DSDSGNIPTVIFATINGVIGVIASLPHDQYLFLEKLQMNLNKVIKGVGGLSHEQWRSFCNEKKVSEPRNFLDGDLIESFLDLNRNRMEEISTAMAVPV-------EELCRRVEELTRLH 193
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A444E478_ENSVE (CPSF_A domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444E478_ENSVE) HSP 1 Score: 203 bits (516), Expect = 8.880e-61 Identity = 97/201 (48.26%), Postives = 142/201 (70.65%), Query Frame = 2
Query: 2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
E+ARDY+ANWM+AVE+L+DDV++G E + N+FT+R+N+DAAT+EER RLE+ GE+HLGEFVN+F GSL+M+ DS ++FGT+NG++G + +L D + FL +LQ + KV+KGVGG SH++WRSF N ++T + NF+DGDL+ES+LD+ R +E+ + P+ E++ RVEE+ RLH
Sbjct: 51 ELARDYNANWMSAVEILDDDVFLGAENNYNLFTVRKNSDAATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSEAGHIPTVIFGTINGVIGVVASLPHDQYVFLEKLQANLVKVIKGVGGLSHEQWRSFNNEKKTVDARNFLDGDLIESFLDLSRSRMDEIASSMAVPL-------EELCKRVEELTRLH 236
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A1Y1HSK5_KLENI (DNA damage-binding protein 1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSK5_KLENI) HSP 1 Score: 217 bits (552), Expect = 6.670e-60 Identity = 106/201 (52.74%), Postives = 144/201 (71.64%), Query Frame = 2
Query: 2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
E ARD++ANWMTAVE L+DDVY+G E N+FT+R+N+DAA++EER RLE+ GEFHLGEFVN+F GSL+M+ DS ++FGTVNG++G I +L +D +L +LQ +T+V+KGVGGFSHD WRSF+N R+T+ + NF+DGDL+E +LD+ R EEV + +DT VED+ R+EE+QRLH
Sbjct: 905 ERARDFNANWMTAVEALDDDVYLGAENSFNLFTVRKNSDAASDEERGRLEVTGEFHLGEFVNRFRPGSLVMRMP--------DSEAAHIPTVIFGTVNGVIGVIASLPQDQFTYLHKLQNCLTEVIKGVGGFSHDHWRSFSNERKTNEARNFLDGDLIEQFLDLRREKMEEVAKKMDT-------TVEDLSKRIEELQRLH 1090
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A446KEV9_TRITD (DNA damage-binding protein 1 n=3 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446KEV9_TRITD) HSP 1 Score: 212 bits (539), Expect = 6.950e-60 Identity = 102/201 (50.75%), Postives = 145/201 (72.14%), Query Frame = 2
Query: 2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
E+ARDY+ANWMTAVEM++DD+Y+G E N+FT+R+N+DAAT+EER RLE+ GE+HLGEFVN+F GSL+M+ DS + + ++FGT+NG++G I +L D++ FL +LQT + K +KGVG SH++WRSF N ++TS + NF+DGDL+ES+LD+ R EEV + + PV E++ RVEE+ RLH
Sbjct: 460 ELARDYNANWMTAVEMIDDDIYVGAENSYNLFTVRKNSDAATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSEMGQIPTVIFGTINGVIGIIASLPHDHYVFLEKLQTTLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRAKMEEVAKAMAVPV-------EELSKRVEELMRLH 645
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A7S0T4Q9_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T4Q9_9CHLO) HSP 1 Score: 200 bits (509), Expect = 1.540e-59 Identity = 105/202 (51.98%), Postives = 139/202 (68.81%), Query Frame = 2
Query: 2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRR--TSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRL 601
E ARD++ NWMTAVE+L+DD Y+G E N+FT+R+NADAAT+EER+RLE+ GE+HLGEFVN+F RGSL+M+ DS LLFGTVNG++G + +L E+ FL LQ A+ KVV GVGG SH++WRSF N R + + N++DGDLVES+LD+ R EEV VDTP+ +++ RVEE+ RL
Sbjct: 62 ERARDFNPNWMTAVEILDDDTYLGAENSFNLFTVRKNADAATDEERSRLEVVGEYHLGEFVNRFRRGSLVMRLP--------DSDHADIPTLLFGTVNGVIGVLASLPEEQFNFLWALQKALNKVVSGVGGLSHEQWRSFHNEHRGRATEAKNYVDGDLVESFLDLRREKAEEVAALVDTPL-------DELTKRVEELVRL 248
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A426XYZ2_ENSVE (CPSF_A domain-containing protein (Fragment) n=2 Tax=commelinids TaxID=4734 RepID=A0A426XYZ2_ENSVE) HSP 1 Score: 203 bits (516), Expect = 2.320e-59 Identity = 97/201 (48.26%), Postives = 142/201 (70.65%), Query Frame = 2
Query: 2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
E+ARDY+ANWM+AVE+L+DDV++G E + N+FT+R+N+DAAT+EER RLE+ GE+HLGEFVN+F GSL+M+ DS ++FGT+NG++G + +L D + FL +LQ + KV+KGVGG SH++WRSF N ++T + NF+DGDL+ES+LD+ R +E+ + P+ E++ RVEE+ RLH
Sbjct: 162 ELARDYNANWMSAVEILDDDVFLGAENNYNLFTVRKNSDAATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSEAGHIPTVIFGTINGVIGVVASLPHDQYVFLEKLQANLVKVIKGVGGLSHEQWRSFNNEKKTVDARNFLDGDLIESFLDLSRSRMDEIASSMAVPL-------EELCKRVEELTRLH 347
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A022PY42_ERYGU (CPSF_A domain-containing protein (Fragment) n=2 Tax=Lamiales TaxID=4143 RepID=A0A022PY42_ERYGU) HSP 1 Score: 209 bits (532), Expect = 2.680e-59 Identity = 101/201 (50.25%), Postives = 147/201 (73.13%), Query Frame = 2
Query: 2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
E ARDY+ANWM+AVE+L+DD+Y+G E + N+FT+R+N++ AT+EER RLE+ GE+HLGEFVN+F GSL+M+ DS + + ++FGTVNG++G I +L + + FL +LQT M KV+KGVGG SH++WRSF N ++T + NF+DGDL+ES+LD+ R+ EEV + ++ PV E+++ RVEE+ RLH
Sbjct: 404 ERARDYNANWMSAVEILDDDIYVGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSDVGQIPTVIFGTVNGVIGVIASLPHEQYVFLEKLQTNMRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLNRNQMEEVSKAINVPV-------EELMKRVEELTRLH 589
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A388JU08_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JU08_CHABU) HSP 1 Score: 215 bits (547), Expect = 2.760e-59 Identity = 105/201 (52.24%), Postives = 144/201 (71.64%), Query Frame = 2
Query: 2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
E A DY+ANWMTAVE+L+DD+Y+G E N+FT+R+N+DAA++EER RLE+ G++HLGEFVN GSL+M+ DS + ++FGTVNG++G I +L ++ FL +LQ +TKV+KGVGGFSHD+WRSF N RRT+ + NF+DGDL+E++LD+ RH +EV R +D PV E++ RVEEM RLH
Sbjct: 863 ERAHDYNANWMTAVEILDDDIYLGAENSFNLFTVRKNSDAASDEERGRLELVGDYHLGEFVNPIRHGSLVMRLP--------DSEASQIPTVIFGTVNGVIGVIASLQQEQFAFLHKLQKCLTKVIKGVGGFSHDQWRSFCNERRTTDAKNFLDGDLIEAFLDLKRHRMDEVSRMMDVPV-------EELCKRVEEMTRLH 1048
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Match: A0A446KEU6_TRITD (DNA damage-binding protein 1 n=5 Tax=Poaceae TaxID=4479 RepID=A0A446KEU6_TRITD) HSP 1 Score: 212 bits (539), Expect = 9.930e-59 Identity = 102/201 (50.75%), Postives = 145/201 (72.14%), Query Frame = 2
Query: 2 EVARDYHANWMTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFVNKFCRGSLLMQSSEVNGPGGMDSPLVKGQPLLFGTVNGMVGTILNLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESYLDMPRHNQEEVLRHVDTPVGDKQWAVEDVVVRVEEMQRLH 604
E+ARDY+ANWMTAVEM++DD+Y+G E N+FT+R+N+DAAT+EER RLE+ GE+HLGEFVN+F GSL+M+ DS + + ++FGT+NG++G I +L D++ FL +LQT + K +KGVG SH++WRSF N ++TS + NF+DGDL+ES+LD+ R EEV + + PV E++ RVEE+ RLH
Sbjct: 665 ELARDYNANWMTAVEMIDDDIYVGAENSYNLFTVRKNSDAATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP--------DSEMGQIPTVIFGTINGVIGIIASLPHDHYVFLEKLQTTLVKFIKGVGSLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLNRAKMEEVAKAMAVPV-------EELSKRVEELMRLH 850 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig119.1217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig119.1217.1 >prot_E-siliculosus-1a_F_contig119.1217.1 ID=prot_E-siliculosus-1a_F_contig119.1217.1|Name=mRNA_E-siliculosus-1a_F_contig119.1217.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=192bp MTAVEMLNDDVYIGGEADCNIFTLRRNADAATEEERARLEIQGEFHLGEFback to top mRNA from alignment at E-siliculosus-1a_F_contig119:79491..80823- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig119.1217.1 ID=mRNA_E-siliculosus-1a_F_contig119.1217.1|Name=mRNA_E-siliculosus-1a_F_contig119.1217.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1333bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:79491..80823- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig119:79491..80823- >mRNA_E-siliculosus-1a_F_contig119.1217.1 ID=mRNA_E-siliculosus-1a_F_contig119.1217.1|Name=mRNA_E-siliculosus-1a_F_contig119.1217.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:79491..80823- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |