mRNA_E-siliculosus-1a_F_contig1010.119.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Match: D7G8C2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C2_ECTSI) HSP 1 Score: 1035 bits (2676), Expect = 0.000e+0 Identity = 552/595 (92.77%), Postives = 563/595 (94.62%), Query Frame = 2
Query: 257 MAAASSSTGTTCTEPEHAGRATEEGLAVMTSRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPARH-VGPNSMLWTLSEASSLGEEAGWETIVEQDGITPAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTVDFEGGELQGVLEVECLPCGRRFDAPLLLDFPVEGRNKEDPIIDPHGRIQYEILIKDPHSERWVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFFFKPLAIGPQLFHEQTIPWVQSKRHQSLIQNNTPRGVDIHIYAMRMSQWSAAVESVKAGAGVEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSGEGKVIGSPVASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGVNIGLGAERPGAEQLIGSPAMAESSGDDISPTGAGPADDAAAIAASTTRSAGXXXXXXXXXXXVPAEAAAXXXXXXXXXXX-EDREXXAAKAAVDDPSAGARSDAHPNASPFPATKSAAIVSPVA 2035
MAAASSSTGTTCTEPEH GRATEE A+MTSRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPAR VGPNSMLWTLSEASSLGEEAGWETIVEQDGI PAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTV+FEGGELQG+LEVECLPCGRRFDAPLLLDFPV+GRNKE+PIID HGRIQYEILIKDP SE WVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFFFKPL IGPQLFH+QTIPW QSKRHQSLIQNNTPRGVD+HIYAMRMSQWSAA+ESVKAGAG+EGFQANFEFTGDVRQNVNPAALVPQMVTIPSG+SHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVS EGKVIGSP ASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGVNIGLGAERPGAEQ +GSPAMAESSGDDISPTGAGPADDAAAIA STTRSAG VPAEAAAXXXXXXXXXX EDRE AAKAAVDDP AGARSDAHPNASPFPATKSAA VSPVA
Sbjct: 1 MAAASSSTGTTCTEPEH-GRATEEDSAIMTSRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPARSAVGPNSMLWTLSEASSLGEEAGWETIVEQDGIKPAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTVEFEGGELQGILEVECLPCGRRFDAPLLLDFPVDGRNKEEPIIDAHGRIQYEILIKDPRSESWVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFFFKPLDIGPQLFHKQTIPWAQSKRHQSLIQNNTPRGVDVHIYAMRMSQWSAALESVKAGAGIEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGNSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSEEGKVIGSPAASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGVNIGLGAERPGAEQFVGSPAMAESSGDDISPTGAGPADDAAAIATSTTRSAGDDAAAVTAPTAVPAEAAAXXXXXXXXXXVPEDREPPAAKAAVDDPWAGARSDAHPNASPFPATKSAATVSPVA 594
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Match: A0A6H5JWE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE2_9PHAE) HSP 1 Score: 852 bits (2200), Expect = 2.570e-301 Identity = 448/509 (88.02%), Postives = 466/509 (91.55%), Query Frame = 2
Query: 257 MAAASSSTGTTCTEPEHAGRATEEGLAVMTSRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPARH-VGPNSMLWTLSEASSLGEEAGWETIVEQDGITPAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTVDFEGGELQGVLEVECLPCGRRFDAPLLLDFPVEGRNKEDPIIDPHGRIQYEILIKDPHSERWVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFF-FKPLAIGPQLFHEQTIPWVQSKRHQSLIQNNTPRGVDIHIYAMRMSQWSAAVESVKAGAGVEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSGEGKVIGSPVASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGVNIGLGAERPGAEQLIGSPAMAESSGDDISPTGAGPAD 1777
MAAASSSTG T T+PEH GRATEE LAVMT RPF+RDVSQE LPLGRRL+RA SQGIN A+SIR LK LS SRSSSGDT NLTP P+ + VGPNS LWTLSEASS+GEEAGWETIVEQDGI PAMGL FHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDL QTVDFEGG+L GVLEVECLPCGRRFDAPLLLDFPV+GRNKEDPIID HGRIQYEILIKD SERWVRDPESSIP +IVQDNQGKVYVRAH+RHFS WG F KPL GPQLFHEQTIPW+QSKRHQSLIQNNTP GVDIHIYAMR++QWSAAV+SVKAGAG EGFQANFEFTGDV QNVNPAALVPQMVTIP GHSHWIEVPRVGAGFRSSRKAVVMIVTE NDENDGKRMRLEAVEHLRSRTMLTVTLRVS EGKVIGSPVA+EAGGILSQLMRAIQNDVNATPNNAPST RSRSETNSGVNIGLGAE PGAEQ +GSPAMAESSGDDI+PTGAGPAD
Sbjct: 1 MAAASSSTGRTGTQPEH-GRATEEDLAVMTCRPFNRDVSQEESLPLGRRLMRALSQGINSAASIRILKSLSAASRSSSGDTANLTPRPSLNAVGPNSRLWTLSEASSVGEEAGWETIVEQDGIKPAMGLKYFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLDQTVDFEGGKLLGVLEVECLPCGRRFDAPLLLDFPVDGRNKEDPIIDAHGRIQYEILIKDSRSERWVRDPESSIPLQIVQDNQGKVYVRAHIRHFSRWGLFKTKPLVFGPQLFHEQTIPWMQSKRHQSLIQNNTP-GVDIHIYAMRIAQWSAAVKSVKAGAGAEGFQANFEFTGDVHQNVNPAALVPQMVTIPPGHSHWIEVPRVGAGFRSSRKAVVMIVTELNDENDGKRMRLEAVEHLRSRTMLTVTLRVS-EGKVIGSPVAAEAGGILSQLMRAIQNDVNATPNNAPSTV-RSRSETNSGVNIGLGAEHPGAEQFMGSPAMAESSGDDITPTGAGPAD 505
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Match: A0A6H5JA61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA61_9PHAE) HSP 1 Score: 620 bits (1599), Expect = 6.580e-211 Identity = 340/495 (68.69%), Postives = 382/495 (77.17%), Query Frame = 2
Query: 257 MAAASSSTGTTCTEPEHAGRATEEGL--AVMTSRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPARHVGPNSMLWTLSEASSLGEEA-GWETIVEQDGITPAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTVDFEGGELQGVLEVECLPCGRRFDAPLLLDFPVEGRNKEDPIIDPHGRIQYEILIKDPHSERWVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFF-FKPLAIGPQLFHEQTIPWVQSKRHQSLIQNNTPRGVDIHIYAMRMSQWSAAVESVKAGAGVEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSGEGKVIGSPVASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGVNIGLGAERPGAEQLIGSPAMA 1729
MAA++SS T G EEGL A +S ++RDVSQ A PL RRL RA S+G +PA+ +R+ K TS+ S T +L+PP G S + + +ASSLGEE WETIV QDGI P MGLT FHSEKHG RLWVQPDSVPV L P Q+ASGP+RV +L QTV EGG+LQGVLEVECLPC RRFDAPL+LD+ V+ + D IID HGRIQYEILIKD SERWVRDPESSIP +IVQDNQGKVYVRAH+RHFS WG F KPL GP+ +H QTIPW Q KRHQSLI NNTP GV+IHIYAMRMSQWSAA++SVKAGAG E FQANFEF+GDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVG GFRSSRKAVV+IVTE NDENDG R+R+EAVEHLRS+TMLTVTLRVS EGKVIGSPVA+E+GGILSQ+MR IQN VNATPNN PSTAAR+ + T G GAE +GSPA A
Sbjct: 1 MAASASSPNVTDALLLEPGAPFEEGLTPASTSSGDYNRDVSQAAASPLSRRLRRALSRGTDPAARVRSFKLHPATSKPGSAGTSHLSPPSGLSAG-GSNVHSDDDASSLGEEERDWETIVGQDGIKPGMGLTCFHSEKHGFRLWVQPDSVPVRLLPD-QQASGPVRVGELSQTVSLEGGKLQGVLEVECLPCERRFDAPLVLDYLVDEDSHGDRIIDSHGRIQYEILIKDSRSERWVRDPESSIPLQIVQDNQGKVYVRAHIRHFSRWGLFKTKPLVFGPEQYHTQTIPWAQRKRHQSLIHNNTPGGVNIHIYAMRMSQWSAALKSVKAGAGEERFQANFEFSGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGTGFRSSRKAVVIIVTESNDENDGTRIRMEAVEHLRSKTMLTVTLRVSEEGKVIGSPVAAESGGILSQVMRVIQNQVNATPNNPPSTAARTNTAT------GAGAE----SLFVGSPATA 483
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Match: D7G8C3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C3_ECTSI) HSP 1 Score: 617 bits (1590), Expect = 3.760e-209 Identity = 318/458 (69.43%), Postives = 364/458 (79.48%), Query Frame = 2
Query: 302 EHAGRATEEGLAVMT--SRPFSRDVSQEAPLPLGRRLLRAFSQGINPASSIRTLKGLSNTSRSSSGDTENLTPPPARHVGPNSMLWTLSEASSLGEEAGWETIVEQDGITPAMGLTSFHSEKHGLRLWVQPDSVPVPLSPGRQEASGPIRVRDLVQTVDFEGGELQGVLEVECLPCGRRFDAPLLLDFPVEGRNKEDPIIDPHGRIQYEILIKDPHSERWVRDPESSIPPEIVQDNQGKVYVRAHVRHFSCWGFF-FKPLAIGPQLFHEQTIPWVQSKRHQSLIQNNTPRGVDIHIYAMRMSQWSAAVESVKAGAGVEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSGEGKVIGSPVASEAGGILSQLMRAIQNDVNATPNNAPSTAARSRSETNSGV 1666
+H+G EEGLA + S + RDVSQ A PL RRL RA S+GI+PA+ +R+ K T + S DT +++PP G ++++ +S EE WETIV QDGI PAMGLTSFHS+KHG RLWVQPDSVPV Q+ASGP+RV DL QTV EGGELQGVLEVECLPC RRFDAPL+LDF V+G + D IID HGRIQYEILIKD HSERW+RDPE SIP EIVQDNQGKVYVRAHV HFSCWG F KPL GP+ +H QTIPW Q +R+QS+I+NNTP VDIHIYAMRMSQWSAA+ESVKAG G+EGFQ NFEFTGDV +NVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVV+IVTE NDE+ G R+R+EAVEHLRS+TMLTVTLRV EGKVIGSP A+E+GGILSQ+MR IQN VNATP+N PSTAAR+ + T +G
Sbjct: 42 KHSGALFEEGLAPASTSSGEYDRDVSQAAASPLSRRLRRALSRGIDPAARVRSFKRSPATPKPGSADTSHISPPSGFSAGGSNVVSDDDVSSQGEEERDWETIVGQDGIKPAMGLTSFHSQKHGFRLWVQPDSVPVRFLQD-QQASGPVRVGDLSQTVSLEGGELQGVLEVECLPCERRFDAPLMLDFLVDGDSHGDRIIDSHGRIQYEILIKDSHSERWIRDPEPSIPLEIVQDNQGKVYVRAHVLHFSCWGLFKTKPLVFGPEQYHTQTIPWAQRRRNQSVIKNNTPGSVDIHIYAMRMSQWSAALESVKAGVGIEGFQGNFEFTGDVHENVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVIIVTESNDESGGTRVRMEAVEHLRSKTMLTVTLRVCEEGKVIGSPAAAESGGILSQVMRVIQNQVNATPHNPPSTAARTNTATGAGA 498
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Match: D7G1B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B6_ECTSI) HSP 1 Score: 116 bits (291), Expect = 8.300e-25 Identity = 83/221 (37.56%), Postives = 115/221 (52.04%), Query Frame = 2
Query: 1100 QTIPWVQSKRHQSLIQNNTPRGVDIHIYAMRMSQWSAAVESVKAGAGVEGFQANFEFTGDVRQNVNPAALVPQMVTIPSGHSHWIEVPRVGAGFRSSRKAVVMIVTEFNDENDGKRMRLEAVEHLRSRTMLTVTLRVSGE--GKVI--------------------------------------------GSP-----VASEAGGILSQLMRAIQNDVNAT 1609
+ IP+ +RH+S+I+NN+ G I ++ M MS WSA +ESV AGAG G + N E D +++ AA + Q+V IP GHSHW E+PRV G SRKA+V+I +E D +M+L+AV HLRS T+LTV+L S G+V+ SP V SE GGILSQ+MR IQ +++A+
Sbjct: 5 ERIPFGSRRRHKSVIRNNSNGGESIFVFVMSMSVWSAGLESVMAGAGA-GVKRNVEVKFDPSASISSAA-IRQVVVIPPGHSHWFEIPRVAGGSFFSRKAMVVIASEGEDP----KMQLQAVVHLRSSTLLTVSLGPSSRTRGRVVVDTLTRENLISHDKANEQHSSPQADRSDTETAPASTCDTASNGESSPFDFVEVGSEDGGILSQIMRVIQTNLSAS 219 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1010.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1010.119.1 >prot_E-siliculosus-1a_F_contig1010.119.1 ID=prot_E-siliculosus-1a_F_contig1010.119.1|Name=mRNA_E-siliculosus-1a_F_contig1010.119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=594bp MAAASSSTGTTCTEPEHAGRATEEGLAVMTSRPFSRDVSQEAPLPLGRRLback to top mRNA from alignment at E-siliculosus-1a_F_contig1010:2207..8312- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1010.119.1 ID=mRNA_E-siliculosus-1a_F_contig1010.119.1|Name=mRNA_E-siliculosus-1a_F_contig1010.119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6106bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1010:2207..8312- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1010:2207..8312- >mRNA_E-siliculosus-1a_F_contig1010.119.1 ID=mRNA_E-siliculosus-1a_F_contig1010.119.1|Name=mRNA_E-siliculosus-1a_F_contig1010.119.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1010:2207..8312- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |