mRNA_E-siliculosus-1a_F_contig10087.113.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10087.113.1
Unique NamemRNA_E-siliculosus-1a_F_contig10087.113.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10087.113.1 vs. uniprot
Match: D7FJY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY3_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 3.100e-69
Identity = 107/109 (98.17%), Postives = 109/109 (100.00%), Query Frame = 1
Query:    1 PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQASLAGRELQKLIGDESVYFIVSPYTRTRMTYKIVKEGLEKRQHFAMKEDPRLRELDFGNFQDLETMQETME 327
            PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQA+LAGRELQKLIGDESVYFIVSPYTRTRMTYKIVKEGLE+RQHFAMKEDPRLRELDFGNFQDLETMQETME
Sbjct:   17 PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQATLAGRELQKLIGDESVYFIVSPYTRTRMTYKIVKEGLEQRQHFAMKEDPRLRELDFGNFQDLETMQETME 125          
BLAST of mRNA_E-siliculosus-1a_F_contig10087.113.1 vs. uniprot
Match: A0A6H5KR22_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR22_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 2.870e-62
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1
Query:    1 PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQASLAGRELQKLIGDESVYFIVSPYTRTRMTYKIVKEGLEKRQHFAMKEDPRLRELDFGNFQDLETMQETME 327
            PFRIILMRHAESEGNVDKC+YSSTPDHALKITERGKRQA+ AGRELQKLIGDESVYFIVSPYTRTRMTY IVKEGL KRQHFAMKEDPRLRELDFGNFQD  TMQETME
Sbjct:   68 PFRIILMRHAESEGNVDKCMYSSTPDHALKITERGKRQATFAGRELQKLIGDESVYFIVSPYTRTRMTYNIVKEGLGKRQHFAMKEDPRLRELDFGNFQDSGTMQETME 176          
BLAST of mRNA_E-siliculosus-1a_F_contig10087.113.1 vs. uniprot
Match: UPI00054BF4F1 (histidine phosphatase family protein n=1 Tax=Streptacidiphilus albus TaxID=105425 RepID=UPI00054BF4F1)

HSP 1 Score: 112 bits (280), Expect = 8.070e-29
Identity = 56/102 (54.90%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQASLAGRELQKLIGDESVYFIVSPYTRTRMTYKIVKEGLEKRQHFAMKEDPRLRELDFGNFQDLE 306
            P RI+L+RH ESEGNVD+ +Y   PDHALK+T RG++QA  AG EL++L+GD +V   VSPY RTR T+ ++  GL+ R    + E+PRLRE D+GN QD+E
Sbjct:    4 PLRIVLVRHGESEGNVDESIYERVPDHALKLTGRGRKQALAAGAELRELLGDGAVQAYVSPYLRTRQTFDLM--GLD-RNRLRVMEEPRLREQDWGNLQDVE 102          
BLAST of mRNA_E-siliculosus-1a_F_contig10087.113.1 vs. uniprot
Match: UPI0018ACB664 (histidine phosphatase family protein n=1 Tax=Streptacidiphilus fuscans TaxID=2789292 RepID=UPI0018ACB664)

HSP 1 Score: 109 bits (273), Expect = 9.100e-28
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQASLAGRELQKLIGDESVYFIVSPYTRTRMTYKIVKEGLEKRQHFAMKEDPRLRELDFGNFQDLETMQE 318
            P RI+L+RH ESEGNVD+ +Y   PDHALK+TERG+ QA  AG EL+++ G E V   VSPYTR R T  ++  GLE  +   M E+PRLRE D+GN QDL+ ++E
Sbjct:    4 PRRIVLLRHGESEGNVDESIYERVPDHALKLTERGREQAREAGAELREMFGVERVQVYVSPYTRARQTLGLL--GLEPARIRVM-EEPRLREQDWGNLQDLDDIRE 106          
BLAST of mRNA_E-siliculosus-1a_F_contig10087.113.1 vs. uniprot
Match: A0A239C9K5_9ACTN (Broad specificity phosphatase PhoE n=2 Tax=Streptomyces TaxID=1883 RepID=A0A239C9K5_9ACTN)

HSP 1 Score: 108 bits (269), Expect = 4.730e-27
Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 1
Query:    1 PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQASLAGRELQKLIGDESVYFIVSPYTRTRMTYKIVKEGLEKRQHFAMKEDPRLRELDFGNFQDLETMQ 315
            P RI+L+RH ES+GN D  +Y   PDHAL +T+RG  QA  AGREL++L G+E V   VSPY RT  T+ ++  GLE  +  A KE+PRLRE D+GN+QD E +Q
Sbjct:    4 PRRIVLIRHGESQGNADDTIYERVPDHALTLTDRGVEQARAAGRELRELFGEERVQAFVSPYRRTHQTFHLL--GLEPSRTRA-KEEPRLREQDWGNYQDAEDVQ 105          
BLAST of mRNA_E-siliculosus-1a_F_contig10087.113.1 vs. uniprot
Match: D2VF75_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VF75_NAEGR)

HSP 1 Score: 107 bits (267), Expect = 5.000e-27
Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQASLAGRELQKLIGDESVYFIVSPYTRTRMTYKIVKEGLEKRQHFAMKEDPRLRELDFGNFQD 300
            P RI L+RH ESEGN++  +YS  PD+ +++T +G +QA  AG++L+++IGDESV FIVSPY R+  T++ +       ++  +KEDPRLRE DFGNFQD
Sbjct:    1 PKRIFLIRHGESEGNINSHIYSIKPDNKIELTAKGIQQADEAGKKLKEIIGDESVIFIVSPYRRSVQTFEGIANHFGGMENVTVKEDPRLREQDFGNFQD 100          
BLAST of mRNA_E-siliculosus-1a_F_contig10087.113.1 vs. uniprot
Match: UPI0005620182 (histidine phosphatase family protein n=1 Tax=Streptacidiphilus rugosus TaxID=405783 RepID=UPI0005620182)

HSP 1 Score: 107 bits (266), Expect = 1.020e-26
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQASLAGRELQKLIGDESVYFIVSPYTRTRMTYKIVKEGLEKRQHFAMKEDPRLRELDFGNFQDLE 306
            P RI+L+RH ESEGNVD+ +Y   PDHAL +T RG+ QA  AG EL+ + G E +   VSPYTRTR T +++  GLE  +   M E+PRLRE D+GN QDLE
Sbjct:    4 PRRIVLIRHGESEGNVDESIYERVPDHALTLTARGREQARAAGAELRTMFGMERIQVYVSPYTRTRQTLELL--GLEPARVRVM-EEPRLREQDWGNLQDLE 102          
BLAST of mRNA_E-siliculosus-1a_F_contig10087.113.1 vs. uniprot
Match: UPI0015F7C0C2 (histidine phosphatase family protein n=1 Tax=Streptacidiphilus sp. P02-A3a TaxID=2704468 RepID=UPI0015F7C0C2)

HSP 1 Score: 107 bits (266), Expect = 1.100e-26
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQASLAGRELQKLIGDESVYFIVSPYTRTRMTYKIVKEGLEKRQHFAMKEDPRLRELDFGNFQDLE 306
            P RI+L+RH ESEGNVD+ +Y   PDHAL++T RG++QA   G EL+ ++GDE V   VSPY RTR T+ ++    E+     + E+PRLRE D+GN QD+E
Sbjct:    4 PQRIVLVRHGESEGNVDETIYERVPDHALELTRRGRKQAVATGEELRAVLGDEPVQVYVSPYLRTRQTFDLLALDPER---LRVMEEPRLREQDWGNLQDVE 102          
BLAST of mRNA_E-siliculosus-1a_F_contig10087.113.1 vs. uniprot
Match: UPI001D03A26E (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D03A26E)

HSP 1 Score: 109 bits (272), Expect = 2.110e-26
Identity = 51/100 (51.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQASLAGRELQKLIGDESVYFIVSPYTRTRMTYKIVKEGLEKRQHFAMKEDPRLRELDFGNFQD 300
            P RI L+RH ESEGN+D  VY+  PD+ +++TE G +QA  AG++L+++IGDESV F +SPY R+  T++++ +    +++   KEDPRLRE DFGNFQD
Sbjct:  124 PKRIFLIRHGESEGNIDPNVYAVKPDNKIELTELGMQQADEAGKKLKQIIGDESVCFFISPYKRSVQTFEMIAKHFGGKENVYYKEDPRLREQDFGNFQD 223          
BLAST of mRNA_E-siliculosus-1a_F_contig10087.113.1 vs. uniprot
Match: C1MRD5_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MRD5_MICPC)

HSP 1 Score: 108 bits (269), Expect = 2.870e-26
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 PFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQASLAGRELQKLIG-DESVYFIVSPYTRTRMTYKIVKEGLEKRQHFAMKEDPRLRELDFGNFQDL 303
            P RIIL+RHAESEGNVD+ VY   PDH +++TE+GK+QA  AG +L+ ++G +ESVY  VSPY RT  T   + + +   +   ++E+PR+RE DFGNFQD+
Sbjct:   22 PKRIILIRHAESEGNVDETVYQRKPDHRIELTEKGKQQARDAGEKLKAILGPNESVYAYVSPYMRTEQTLYEIGQAIGTHRVLGVREEPRMREQDFGNFQDV 123          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10087.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJY3_ECTSI3.100e-6998.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR22_9PHAE2.870e-6293.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI00054BF4F18.070e-2954.90histidine phosphatase family protein n=1 Tax=Strep... [more]
UPI0018ACB6649.100e-2854.72histidine phosphatase family protein n=1 Tax=Strep... [more]
A0A239C9K5_9ACTN4.730e-2753.33Broad specificity phosphatase PhoE n=2 Tax=Strepto... [more]
D2VF75_NAEGR5.000e-2751.00Predicted protein (Fragment) n=1 Tax=Naegleria gru... [more]
UPI00056201821.020e-2654.90histidine phosphatase family protein n=1 Tax=Strep... [more]
UPI0015F7C0C21.100e-2650.98histidine phosphatase family protein n=1 Tax=Strep... [more]
UPI001D03A26E2.110e-2651.00uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
C1MRD5_MICPC2.870e-2651.96Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10087contigE-siliculosus-1a_F_contig10087:1060..2228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size309
Model size327
Exons3
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs28M0P@1,2QTHF@2759
EggNOG free text desc.phosphatase activity
Seed eggNOG ortholog2880.D7FJY3
Seed ortholog evalue6.2e-51
Seed ortholog score206.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10087.113.1prot_E-siliculosus-1a_F_contig10087.113.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10087 1078..2228 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927512.48676-UTR-E-siliculosus-1a_F_contig10087:1059..10771622927512.48676-UTR-E-siliculosus-1a_F_contig10087:1059..1077Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10087 1060..1077 +
1696318560.7803054-UTR-E-siliculosus-1a_F_contig10087:1059..10771696318560.7803054-UTR-E-siliculosus-1a_F_contig10087:1059..1077Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10087 1060..1077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927512.4987187-CDS-E-siliculosus-1a_F_contig10087:1077..11731622927512.4987187-CDS-E-siliculosus-1a_F_contig10087:1077..1173Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10087 1078..1173 +
1696318560.7957559-CDS-E-siliculosus-1a_F_contig10087:1077..11731696318560.7957559-CDS-E-siliculosus-1a_F_contig10087:1077..1173Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10087 1078..1173 +
1622927512.512421-CDS-E-siliculosus-1a_F_contig10087:1631..17911622927512.512421-CDS-E-siliculosus-1a_F_contig10087:1631..1791Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10087 1632..1791 +
1696318560.8042567-CDS-E-siliculosus-1a_F_contig10087:1631..17911696318560.8042567-CDS-E-siliculosus-1a_F_contig10087:1631..1791Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10087 1632..1791 +
1622927512.52546-CDS-E-siliculosus-1a_F_contig10087:2175..22281622927512.52546-CDS-E-siliculosus-1a_F_contig10087:2175..2228Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10087 2176..2228 +
1696318560.812031-CDS-E-siliculosus-1a_F_contig10087:2175..22281696318560.812031-CDS-E-siliculosus-1a_F_contig10087:2175..2228Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10087 2176..2228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10087.113.1

>prot_E-siliculosus-1a_F_contig10087.113.1 ID=prot_E-siliculosus-1a_F_contig10087.113.1|Name=mRNA_E-siliculosus-1a_F_contig10087.113.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=103bp
MRHAESEGNVDKCVYSSTPDHALKITERGKRQASLAGRELQKLIGDESVY
FIVSPYTRTRMTYKIVKEGLEKRQHFAMKEDPRLRELDFGNFQDLETMQE
TME
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mRNA from alignment at E-siliculosus-1a_F_contig10087:1060..2228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10087.113.1 ID=mRNA_E-siliculosus-1a_F_contig10087.113.1|Name=mRNA_E-siliculosus-1a_F_contig10087.113.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1169bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10087:1060..2228+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCTTCCGCATCATCTTGATGAGACACGCGGAGTCTGAGGGCAACGTGGA TAAGTGCGTGTACTCTTCAACTCCAGACCACGCGCTCAAGATCACAGAGC GGGGAAAACGTCAGGTGGGCCGAGACATCGAAAAATCCCTCGTTCATTCA TCCAACCCCGAAGGCCACATTTGCCATGCAGTCGTTGACGTTACGCACGG GGGTAGAATTTACATGATGCAGCAGAACGTCCACCTGTTGCATTTATTTG TCGTAGTCGGCGAGAGTGACAAGTGTTTTCTTTGTGGACAGTCCGTTAGA GTGTCGTCGTGTTTTCCTTTGATGTCGGGGAACGCTCCGAAGGCAGGCGC CTGTCGCTGGGGGCGAGGTGAAGAAGTGACATAGGGCTACCGCGATGAAG ACTCCATACATGTACAGCAGTCGAAATAGTTTGCGAGGCAGGCGATCGCC CTTCCTCTTCCGCCGAGCGCGCTGCCCATCCCCCTGCCCGCCTCGGAACA CGAATTGACCAACCAAAACTTTGGCGTGTTTGCTGTTGGTTGTGATTTTC TCGGGCGGGGTGACGCGCACAGGCGAGTCTTGCCGGCAGGGAGCTCCAGA AGCTGATAGGGGACGAGAGCGTGTACTTCATAGTCTCTCCCTACACGAGG ACGAGGATGACCTACAAGATAGTCAAGGAAGGGTTGGAGAAGAGACAGCA CTTCGCGATGAAGGAAGATCCCAGGCTGCGAGGTTAGAGTCGGTTTGAGG TAATTGTGAGACTCGGAGAAAGAGCCTTTTGTTTTGCCACGGCAAGTCTT CCGAAACGTTGAAGGATCCTCAATGCTGCGGAACATCTATAGGGTGATTT TGGTGATAACGGCGAGAGGGAAAAAACCGCCGGAATTATTTCGTAGCTTC TGCTGCAGCTGCTAGGAATTACGCCGCCGTATGCTACGGTGCATTTTTGC CTTGTGTCCTTGCTAGCACGTTTTGCCCGGTTGGTATGCTATCTCAGGGC GATGGCGTACATCCACCATGCCGCTGCTTAATTTACTCTGCGTGCCCCCC TTTTGGCGCGCTTGTGTCTCTCTCCTCTTGCGTGCCCCCCCCCCATGTGG GATGCTACCTTCGTAGAGCTGGACTTCGGCAATTTCCAGGATTTAGAGAC AATGCAGGAGACCATGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10087:1060..2228+

>mRNA_E-siliculosus-1a_F_contig10087.113.1 ID=mRNA_E-siliculosus-1a_F_contig10087.113.1|Name=mRNA_E-siliculosus-1a_F_contig10087.113.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10087:1060..2228+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGACACGCGGAGTCTGAGGGCAACGTGGATAAGTGCGTGTACTCTTC
AACTCCAGACCACGCGCTCAAGATCACAGAGCGGGGAAAACGTCAGATGA
GACACGCGGAGTCTGAGGGCAACGTGGATAAGTGCGTGTACTCTTCAACT
CCAGACCACGCGCTCAAGATCACAGAGCGGGGAAAACGTCAGGCGAGTCT
TGCCGGCAGGGAGCTCCAGAAGCTGATAGGGGACGAGAGCGTGTACTTCA
TAGTCTCTCCCTACACGAGGACGAGGATGACCTACAAGATAGTCAAGGAA
GGGTTGGAGAAGAGACAGCACTTCGCGATGAAGGAAGATCCCAGGCTGCG
AGGCGAGTCTTGCCGGCAGGGAGCTCCAGAAGCTGATAGGGGACGAGAGC
GTGTACTTCATAGTCTCTCCCTACACGAGGACGAGGATGACCTACAAGAT
AGTCAAGGAAGGGTTGGAGAAGAGACAGCACTTCGCGATGAAGGAAGATC
CCAGGCTGCGAGAGCTGGACTTCGGCAATTTCCAGGATTTAGAGACAATG
CAGGAGACCATGGAGAGCTGGACTTCGGCAATTTCCAGGATTTAGAGACA
ATGCAGGAGACCATGGAG
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