mRNA_E-siliculosus-1a_F_contig1170.1109.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1170.1109.1 vs. uniprot
Match: D8LRY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY8_ECTSI) HSP 1 Score: 419 bits (1077), Expect = 1.140e-140 Identity = 239/247 (96.76%), Postives = 240/247 (97.17%), Query Frame = 3
Query: 195 MVDDVVGALEELVEQQASLVRRKAELREKKDGDYREKHAALQERMKELDQSALEHRKARHAALRRMAELRGSEEAFKLKRLEYAKETWEIERGLQLEKMARQMMEMQPVMEQRHKLEDEQRLRLRRLDAIEDEKVRRRRVKERQLQDSLDRAKHLQDHAGEGRSDPVASALEADERFEHAEEEPSIGRDGGAGDSSLAKIAAEIDIVRRR*EAHERVRAHEALRRKLNEQRFRLAGATDSVDLKRQQ 935
MVDDVVGALEELVEQQASLVRRKAELREKKDG YREKHAALQERMKELDQSALEHRKARHAALRRMAELRGSEEAFKLKRLEYA+ETWEIERGLQLEKMARQMMEMQPVMEQRHKLEDEQRLRLRRLDAIEDEKVRRRRV ERQLQDSLDRAKHLQDHAGEGRSDPVASALEADE FEHAEE PSIGRDGGAGDSSLAKIAAEIDIVRRR EAHE VR HEALRRKLNEQRFRLAGATDSVDLKRQQ
Sbjct: 1 MVDDVVGALEELVEQQASLVRRKAELREKKDGYYREKHAALQERMKELDQSALEHRKARHAALRRMAELRGSEEAFKLKRLEYARETWEIERGLQLEKMARQMMEMQPVMEQRHKLEDEQRLRLRRLDAIEDEKVRRRRVNERQLQDSLDRAKHLQDHAGEGRSDPVASALEADESFEHAEEAPSIGRDGGAGDSSLAKIAAEIDIVRRR-EAHESVRVHEALRRKLNEQRFRLAGATDSVDLKRQQ 246
BLAST of mRNA_E-siliculosus-1a_F_contig1170.1109.1 vs. uniprot
Match: A0A6H5K8K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K0_9PHAE) HSP 1 Score: 291 bits (744), Expect = 1.190e-85 Identity = 167/176 (94.89%), Postives = 168/176 (95.45%), Query Frame = 3
Query: 342 QSALEHRKARHAALRRMAELRGSEEAFKLKRLEYAKETWEIERGLQLEKMARQMMEMQPVMEQRHKLEDEQRLRLRRLDAIEDEKVRRRRVKERQLQDSLDRAKHLQDHAGEGRSDPVASALEADERFEHAEEEPSIGRDGGAGDSSLAKIAAEIDIVRRR*EAHERVRAHEALRR 869
QSALEHRKARHAALRRMAELRGSEEAFKLKRLEYA+ETWEIERGLQLEKMARQMMEMQPVMEQRHKLEDEQRLRLRRL AIEDEKVRRRRVKERQLQDSLDRAKHLQDHAGEGRSDPVASALEADE EHAEE PSIGRDGGA DSSLAKIAAEIDIVRRR EAH VRAHEALRR
Sbjct: 47 QSALEHRKARHAALRRMAELRGSEEAFKLKRLEYARETWEIERGLQLEKMARQMMEMQPVMEQRHKLEDEQRLRLRRLAAIEDEKVRRRRVKERQLQDSLDRAKHLQDHAGEGRSDPVASALEADESLEHAEEAPSIGRDGGADDSSLAKIAAEIDIVRRR-EAHASVRAHEALRR 221 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1170.1109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1170.1109.1 >prot_E-siliculosus-1a_F_contig1170.1109.1 ID=prot_E-siliculosus-1a_F_contig1170.1109.1|Name=mRNA_E-siliculosus-1a_F_contig1170.1109.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=211bp MVDDVVGALEELVEQQASLVRRKAELREKKDGDYREKHAALQERMKELDQback to top mRNA from alignment at E-siliculosus-1a_F_contig1170:23422..31214- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1170.1109.1 ID=mRNA_E-siliculosus-1a_F_contig1170.1109.1|Name=mRNA_E-siliculosus-1a_F_contig1170.1109.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7793bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1170:23422..31214- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1170:23422..31214- >mRNA_E-siliculosus-1a_F_contig1170.1109.1 ID=mRNA_E-siliculosus-1a_F_contig1170.1109.1|Name=mRNA_E-siliculosus-1a_F_contig1170.1109.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1170:23422..31214- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |