mRNA_E-siliculosus-1a_F_contig1167.1085.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1167.1085.1
Unique NamemRNA_E-siliculosus-1a_F_contig1167.1085.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1085.1 vs. uniprot
Match: D7G206_ECTSI (CHY-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G206_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 1.480e-65
Identity = 94/100 (94.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:   13 IINAKVSIQFPCCKRWYECPECHDERENHPQRISAKNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAKVAQLALSILAAEVSAEVSKF 312
            ++  +VSIQFPCCKRWYECPECHDERENHPQRIS KNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAKVAQLALSILAAEVSAEVSKF
Sbjct:    2 LVPGQVSIQFPCCKRWYECPECHDERENHPQRISTKNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAKVAQLALSILAAEVSAEVSKF 101
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1085.1 vs. uniprot
Match: F2UL15_SALR5 (CHY zinc finger domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UL15_SALR5)

HSP 1 Score: 115 bits (289), Expect = 2.770e-31
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHPQRISAKNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAKV 255
            MCKHI+NA+V+I+ PCCK+WY+CPECH+E+ +HP + S + V FACK C+K+F KD   Y   D  CPHC+  +V+PA TPE ++
Sbjct:    1 MCKHILNAQVAIRAPCCKKWYDCPECHEEKADHPLKKSYEMV-FACKKCKKVFRKDTREYEEADEYCPHCDNHYVIPAKTPELRI 84
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1085.1 vs. uniprot
Match: B5FVG9_YARLI (YALI0E02343p n=3 Tax=Yarrowia TaxID=4951 RepID=B5FVG9_YARLI)

HSP 1 Score: 112 bits (281), Expect = 4.960e-30
Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHPQRISAKNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAK 252
            MCKHI NA+VSI+  CC++WY+CP+CH+E E+HP R + + + FACK CRK F KDL+ +   DS CP+C+  F++PA TPE K
Sbjct:    1 MCKHITNAQVSIRTQCCRKWYDCPQCHEEAEDHPLRKTTE-MTFACKKCRKAFRKDLTDFDEADSFCPYCDNNFMIPAETPETK 83
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1085.1 vs. uniprot
Match: G2R906_THETT (CHY-type domain-containing protein n=2 Tax=Thermothielavioides terrestris TaxID=2587410 RepID=G2R906_THETT)

HSP 1 Score: 112 bits (280), Expect = 8.120e-30
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHPQRISAKNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAKV 255
            MCKHI+NA+VSI+ PCC++W++CPECH E+E+HP  +    + FACK CRK F KD S +   D  CPHC+  FV+ AVTP+A +
Sbjct:    1 MCKHILNAQVSIRSPCCRKWFDCPECHAEQESHPL-LQRFEMTFACKKCRKCFRKDASEFEEADEYCPHCDNHFVIEAVTPKAAI 84
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1085.1 vs. uniprot
Match: A0A4P9XCR2_9FUNG (CHY-type domain-containing protein n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9XCR2_9FUNG)

HSP 1 Score: 110 bits (275), Expect = 2.940e-29
Identity = 41/82 (50.00%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHPQRISAKNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPE 246
            MCKHI+NA+VS++ PCC++W++CPECHDE   HP R + + V FACK C+K+F KD++++   D  CPHC+  +++ A TP+
Sbjct:    1 MCKHILNAQVSVRSPCCQKWFDCPECHDEVSKHPLRKTMEMV-FACKKCKKVFRKDMTLFEESDEFCPHCDNRYIIDAKTPQ 81
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1085.1 vs. uniprot
Match: A0A8H7UE08_9FUNG (CHY-type domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UE08_9FUNG)

HSP 1 Score: 110 bits (275), Expect = 3.600e-29
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHPQRISAKNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAKV 255
            MCKHI+NA+V+I+ PCC++W++C ECH E   HP    A  +AFACK C+K F KDLS +  ED  CPHC+  FVL AV PEA +
Sbjct:    1 MCKHILNAQVAIRAPCCRKWFDCAECHAEVSQHPL-AKASEMAFACKKCKKTFRKDLSDFEDEDEFCPHCDNHFVLEAVEPEASL 84
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1085.1 vs. uniprot
Match: A0A8H7QRE2_9FUNG (CHY-type domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QRE2_9FUNG)

HSP 1 Score: 110 bits (275), Expect = 3.700e-29
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHPQRISAKNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAKV 255
            MCKHI+NA+V+I+ PCCKRW++C ECH    +HP R + + V FACK C+K F KD++ Y  ED  CPHC+  +V+ AVTPEA++
Sbjct:    1 MCKHILNAQVAIRAPCCKRWFDCAECHAAVTDHPLRKTDEMV-FACKKCKKAFRKDMTDYEEEDEFCPHCDNQYVINAVTPEARI 84
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1085.1 vs. uniprot
Match: A0A077WKK2_9FUNG (CHY-type domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WKK2_9FUNG)

HSP 1 Score: 110 bits (274), Expect = 5.110e-29
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHPQRISAKNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAKV 255
            MCKHI+NA+V+I+  CC+RW++C ECH E  +HP R + + V FACK C+K+F KD++ Y  ED  CPHC+  +VL A+TPE KV
Sbjct:    1 MCKHILNAQVAIRAQCCRRWFDCSECHAEVADHPLRKTDEMV-FACKKCKKVFRKDMTDYEEEDEYCPHCDNHYVLEAITPEPKV 84
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1085.1 vs. uniprot
Match: A0A1S8VTT7_9FUNG (CHY-type domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VTT7_9FUNG)

HSP 1 Score: 110 bits (274), Expect = 5.730e-29
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHPQRISAKNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPE 246
            MCKHI+NA+VS++ PCCK+W++CPECH+E  +H  R   K + FACK CRK F KDLS +   D  CPHC+  +++ A TP+
Sbjct:   12 MCKHILNAQVSVRSPCCKKWFDCPECHEETSDHELR-KTKEMIFACKKCRKTFRKDLSEFDDTDEYCPHCDNKYIIDAKTPQ 92
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1085.1 vs. uniprot
Match: A0A060SWF1_BLAAD (ARAD1A04070p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060SWF1_BLAAD)

HSP 1 Score: 110 bits (274), Expect = 5.900e-29
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    1 MCKHIINAKVSIQFPCCKRWYECPECHDERENHPQRISAKNVAFACKTCRKIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAK 252
            MCKH +NA+VS++  CC++WY+CPECH+E E+H  R + + + F CK C+K F KDL+ +   DS CPHC+  FV+PAVT E K
Sbjct:    1 MCKHFLNAQVSVRTQCCRKWYDCPECHEENEDHKLRKTLE-MTFICKKCKKAFRKDLTDFDETDSFCPHCDNEFVIPAVTKETK 83
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G206_ECTSI1.480e-6594.00CHY-type domain-containing protein n=2 Tax=Ectocar... [more]
F2UL15_SALR52.770e-3154.12CHY zinc finger domain-containing protein n=1 Tax=... [more]
B5FVG9_YARLI4.960e-3054.76YALI0E02343p n=3 Tax=Yarrowia TaxID=4951 RepID=B5F... [more]
G2R906_THETT8.120e-3054.12CHY-type domain-containing protein n=2 Tax=Thermot... [more]
A0A4P9XCR2_9FUNG2.940e-2950.00CHY-type domain-containing protein n=2 Tax=Cauloch... [more]
A0A8H7UE08_9FUNG3.600e-2955.29CHY-type domain-containing protein n=1 Tax=Umbelop... [more]
A0A8H7QRE2_9FUNG3.700e-2954.12CHY-type domain-containing protein n=1 Tax=Mucor s... [more]
A0A077WKK2_9FUNG5.110e-2954.12CHY-type domain-containing protein n=2 Tax=Lichthe... [more]
A0A1S8VTT7_9FUNG5.730e-2952.44CHY-type domain-containing protein n=1 Tax=Batrach... [more]
A0A060SWF1_BLAAD5.900e-2952.38ARAD1A04070p n=1 Tax=Blastobotrys adeninivorans Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1167contigE-siliculosus-1a_F_contig1167:17652..19225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size315
Model size315
Exons4
Ec32 orthologEc-07_003420.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG1940@1,KOG1940@2759
EggNOG free text desc.zinc ion binding
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:1990542
KEGG koko:K16276
Seed eggNOG ortholog2880.D7G206
Seed ortholog evalue1.7e-48
Seed ortholog score198.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1167.1085.1prot_E-siliculosus-1a_F_contig1167.1085.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1167 17652..19225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927685.3842125-CDS-E-siliculosus-1a_F_contig1167:17651..176781622927685.3842125-CDS-E-siliculosus-1a_F_contig1167:17651..17678Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 17652..17678 +
1696318637.959865-CDS-E-siliculosus-1a_F_contig1167:17651..176781696318637.959865-CDS-E-siliculosus-1a_F_contig1167:17651..17678Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 17652..17678 +
1622927685.3978796-CDS-E-siliculosus-1a_F_contig1167:18315..184141622927685.3978796-CDS-E-siliculosus-1a_F_contig1167:18315..18414Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 18316..18414 +
1696318637.9746542-CDS-E-siliculosus-1a_F_contig1167:18315..184141696318637.9746542-CDS-E-siliculosus-1a_F_contig1167:18315..18414Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 18316..18414 +
1622927685.433649-CDS-E-siliculosus-1a_F_contig1167:18759..188061622927685.433649-CDS-E-siliculosus-1a_F_contig1167:18759..18806Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 18760..18806 +
1696318637.994231-CDS-E-siliculosus-1a_F_contig1167:18759..188061696318637.994231-CDS-E-siliculosus-1a_F_contig1167:18759..18806Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 18760..18806 +
1622927685.4445453-CDS-E-siliculosus-1a_F_contig1167:19083..192251622927685.4445453-CDS-E-siliculosus-1a_F_contig1167:19083..19225Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 19084..19225 +
1696318638.0117407-CDS-E-siliculosus-1a_F_contig1167:19083..192251696318638.0117407-CDS-E-siliculosus-1a_F_contig1167:19083..19225Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 19084..19225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1167.1085.1

>prot_E-siliculosus-1a_F_contig1167.1085.1 ID=prot_E-siliculosus-1a_F_contig1167.1085.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1085.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=105bp
MCKHIINAKVSIQFPCCKRWYECPECHDERENHPQRISAKNVAFACKTCR
KIFVKDLSIYGTEDSACPHCETVFVLPAVTPEAKVAQLALSILAAEVSAE
VSKF*
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mRNA from alignment at E-siliculosus-1a_F_contig1167:17652..19225+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1167.1085.1 ID=mRNA_E-siliculosus-1a_F_contig1167.1085.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1085.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1574bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1167:17652..19225+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGTAAGCACATCATCAACGCGAAGGTACCCCGCATTGTTGTGGAGTA
CTACAACGCAAGTATAGGCATATGTACAAGCGCAAACACTTTTGAAAAAA
GTCGACAAAGACTGCTCGTGTATCTACAGTACGTAAGTTAAAGCTTATAA
CGTACAAGTAGACCTTTCTCTTTTGTGTGTGATCGCACTGCTGTGTCGCA
ACACCGGAGAAGAAGTCAAAGGTGGTAGACTATGTAGACTGCGACGGCGG
TAACATATCGGTGTGCAGTCTACAAAAAATCTCACGGACCATACACAGAT
CAAGTCAGGGTATCCATTCGCGACTATGCAGACGGAGGTAGGTCACGAAG
GAGCCACCCCATCGTCAGTGAAATAGTATATCTCCCCTAAATGCGCAGGA
CATGCATGTCCGTCCGTGGAGATGATGTAACGTCTGGGAGAAATCTTGGC
GGTAGAAGTCCAAGATGTATCGTTGAGTCGTAGCGCAGCCTACATACAGT
AGATACCGGCAATTTCTTGAAGATCGCGCAGCGTTCGTTGTGGTTCGAGC
GCGCTATACTTGTCTGCAAAGACACCGCCGCCGTGTTACAAGGAGCCGCA
CATGCGTTACATCGACCTGCAAGCCCGGCGATCGCAATAAAAGCTCATGC
TTGCCCCCGGCCAGGTCAGCATCCAATTCCCGTGTTGTAAGAGATGGTAC
GAGTGCCCGGAGTGTCACGACGAGCGTGAGAATCACCCCCAACGCATAAG
TGCAAAAAACGTGGTGAGCTACAATGCACACTATTGTGCAATGTTACGAG
TGGGTAGATGATTGAGCATGTTCTGGAAACATCTACCACGCACCGTAGGG
AGTGACTATCATAAAGAATGGCGTGCGGCTGGCAGGGTGACGTATACCTG
CAGCTATAGATGGTGTCGAAATACACGACGAAGAAGCTGTCCGCAGCATT
ATTCCAGCTCAACGCGAGAGTCATCGTTGGCTGCACGACCAACGTTTCAG
ATGGGCCCGTAGTCCGGCAGTGGACAGTCTTTTCGTGAACAACTCTTTGC
ATGTGCTATCTCTCGCTTCAGCTTTCGTCCCACGCACACATCCCCGGCAT
TGAGACAGGCGTTCGCGTGCAAGACGTGCCGGAAGATTTTCGTGAAAGAT
CTCAGGTACGTCGGCTCACGATTTATACCTTCATGTAAGCTTCGTAGGGG
AATACGATGTGCCAAACAATGGCTTCGCAGGGGAGTACGATGTACCAAAC
AAAAGCGAATTGAGTTTATTAGATAAAGGCCAAACTGACTGAGTGGTCTA
ATGGTTTAGTCTTTATCTTAATAGAGTTCTAATCGAAAGGGCGGCATGCT
CGCAAAATAGACACGTACACTCGCACCGCTCGTGTTTTCCCCCTCAATCC
CCCCCCTGCAACCCTATCGTTTCCGGGACCAGCATCTACGGTACAGAGGA
CAGCGCTTGCCCGCACTGCGAGACGGTGTTTGTGCTACCTGCGGTGACTC
CCGAGGCAAAGGTGGCGCAACTCGCGCTGAGCATACTAGCGGCGGAGGTG
TCCGCTGAAGTTTCAAAGTTCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1167:17652..19225+

>mRNA_E-siliculosus-1a_F_contig1167.1085.1 ID=mRNA_E-siliculosus-1a_F_contig1167.1085.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1085.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1167:17652..19225+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGTAAGCACATCATCAACGCGAAGATGTGTAAGCACATCATCAACGC
GAAGGTCAGCATCCAATTCCCGTGTTGTAAGAGATGGTACGAGTGCCCGG
AGTGTCACGACGAGCGTGAGAATCACCCCCAACGCATAAGTGCAAAAAAC
GTGGTCAGCATCCAATTCCCGTGTTGTAAGAGATGGTACGAGTGCCCGGA
GTGTCACGACGAGCGTGAGAATCACCCCCAACGCATAAGTGCAAAAAACG
TGGCGTTCGCGTGCAAGACGTGCCGGAAGATTTTCGTGAAAGATCTCAGG
CGTTCGCGTGCAAGACGTGCCGGAAGATTTTCGTGAAAGATCTCAGCATC
TACGGTACAGAGGACAGCGCTTGCCCGCACTGCGAGACGGTGTTTGTGCT
ACCTGCGGTGACTCCCGAGGCAAAGGTGGCGCAACTCGCGCTGAGCATAC
TAGCGGCGGAGGTGTCCGCTGAAGTTTCAAAGTTCTGACATCTACGGTAC
AGAGGACAGCGCTTGCCCGCACTGCGAGACGGTGTTTGTGCTACCTGCGG
TGACTCCCGAGGCAAAGGTGGCGCAACTCGCGCTGAGCATACTAGCGGCG
GAGGTGTCCGCTGAAGTTTCAAAGTTCTGA
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